mRNA_E-siliculosus-1a_F_contig1505.2940.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1505.2940.1 vs. uniprot
Match: D8LLJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ4_ECTSI) HSP 1 Score: 775 bits (2002), Expect = 1.800e-280 Identity = 434/470 (92.34%), Postives = 450/470 (95.74%), Query Frame = 1
Query: 1 MTRTESIEIFSGYRPEGKKRSLTEAYYVPPFGYSSGLKIGEFSKRRRTESSSGVTSASYRYSAPSPTLAPTVFTPAALKAMEQQVPVVRKPFYESELEVLLKNAQDHEMAMRAAFDAAAERKLHEATKRAAILTSDLVDAIFRGQRLSELHEEQEANAADIAKVVQEASATTPDVHRKLAESRAQVDAAEAKKDALLHVLSRESLLHCPPHDDVELTKLLEKHEACLKKVNGLRAQWYRDLIVLEWYFAGDLDYVSSSLQTLASSEDLLPPHVMAVLSAEDAKRAQETGRTRAKELHLSAEARYREIVERVGSLTPCLDIRPSTDARELALAEEKLVRVSAMISAFNLFRTAEANKRMDAQRARNEYNQAMSDVSKCEELLADAEAHEQAALEXXXXXXXXXXXXXXXXXXXXAEMNDFENRLVDPEYEEEGIKQVVVKTREAWNEAVLTVARIKDHCDSAVLRTACVWP 1410
M RTESIEIFSGYR EGKKRSLTEAYYVPPFGYSSGLKIGEFSKRRRTESSSGVTSA+Y YSAPSPTLAPTVFTPAALKAMEQQV VVRKP YES+LEVLLKNAQDHEMAMRAAFDAAAER+L EATKRAAIL SDL+DA+ RG+RLSELHEEQ+ANAA+IAKVVQEA ATTPDV RKLAESRAQ DAAEAKKDALLH LSRESLLHCPPHDDVEL KLL KHEACLKKVN LRAQWYRDL+VLEW+FAGDLDYVSSSLQTLASS+DLLPPHVMAVLSAEDAKRAQETGR RAKELHLSAEARYREIVERVG+LTPCLDIRPSTDARELALAEEKLVRVSAMISAFNLFRTAEANKRMDAQRARNEYN+AMSDVSKCEELLADAEAHEQAALEXXXXXXXXXXXXXXXXXX AEM DFENRLVDPEYEEEG+K+VV KTREAWNEAVLTVARIK+HCDSAVLRTACVWP
Sbjct: 1 MARTESIEIFSGYRSEGKKRSLTEAYYVPPFGYSSGLKIGEFSKRRRTESSSGVTSATYTYSAPSPTLAPTVFTPAALKAMEQQVRVVRKPSYESDLEVLLKNAQDHEMAMRAAFDAAAERELREATKRAAILASDLLDAVSRGRRLSELHEEQKANAAEIAKVVQEAGATTPDVQRKLAESRAQADAAEAKKDALLHGLSRESLLHCPPHDDVELAKLLVKHEACLKKVNRLRAQWYRDLLVLEWHFAGDLDYVSSSLQTLASSDDLLPPHVMAVLSAEDAKRAQETGRARAKELHLSAEARYREIVERVGTLTPCLDIRPSTDARELALAEEKLVRVSAMISAFNLFRTAEANKRMDAQRARNEYNRAMSDVSKCEELLADAEAHEQAALEXXXXXXXXXXXXXXXXXXVVAEMIDFENRLVDPEYEEEGLKKVVTKTREAWNEAVLTVARIKEHCDSAVLRTACVWP 470
BLAST of mRNA_E-siliculosus-1a_F_contig1505.2940.1 vs. uniprot
Match: A0A6H5L484_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L484_9PHAE) HSP 1 Score: 678 bits (1749), Expect = 4.950e-241 Identity = 387/530 (73.02%), Postives = 417/530 (78.68%), Query Frame = 1
Query: 1 MTRTESIEIFSGYRPEGKKRSLTEAYYVPPFGYSSGLKIGEFSKRRRTESSSGVTSASYRYSAPSPTLAPTVFTPAALKAMEQQVPVVRKPFYESELEVLLKNAQDHEMAMRAAFDAAAERKLHEATKRAAILTSDLVDAIFRGQRLSELHEEQEANAADIAKVVQEASATTPDVHRKLAESRAQVDAAEAKKDALLHVLSRESLLHCPPHDDVELTKLLEKHEACLKKVNGLRAQWYRDLIVLEWYFAGDLDYVSSSLQTLASSEDLLPPHVMAVLSAEDAKRAQETGRTRAKELHLSAEAR-------------YREIVERVGSLTPCLDIRPSTDARELALAEEKLVRVSAMISAFNLFR-----------------------------------------------TAEANKRMDAQRARNEYNQAMSDVSKCEELLADAEAHEQAALEXXXXXXXXXXXXXXXXXXXXAEMNDFENRLVDPEYEEEGIKQVVVKTREAWNEAVLTVARIKDHCDSAVLRTACVWP 1410
M RTESIE FSGYRPEGKKRSLTEAYYVPPFGYSSGLK+ EF+KRRRTESSSGVTSA+Y YSAPSPTLAPT FTPAALKAM+ QVPVVR+P YES+L++LLK+AQDHE+AMRAA DAA ER+LHEATKRAAIL SDL+DAI RGQRLSEL +EQ+ANAA+IAKVVQEA ATT DV RKLAESRAQ DAAEAKKDALLH LSRESLLHCPPHDDVEL KLLEKHEACLKK NGLRAQWYRDL+VLE +FAGDLDYVSSSLQTLASS++LLPPHVMAVLSAEDAKRAQETGR RAKELHLSAEA YREIV++VG+LTPCL RPS DARELALAEEKLVRVSAMISAFNL TA+ANKRMDAQRA NEYNQAM DVSKCE+ LADA+A+EQ ALE AEM DF+NRLVDPE EEEGIK+VVVKTR+AWNEAVLTVARIK+HCDSAVLRTACVWP
Sbjct: 1 MARTESIENFSGYRPEGKKRSLTEAYYVPPFGYSSGLKMCEFTKRRRTESSSGVTSATYTYSAPSPTLAPTGFTPAALKAMKHQVPVVRRPPYESDLKLLLKDAQDHEIAMRAALDAA-ERELHEATKRAAILASDLLDAISRGQRLSELDQEQKANAAEIAKVVQEAGATTLDVQRKLAESRAQADAAEAKKDALLHGLSRESLLHCPPHDDVELAKLLEKHEACLKKANGLRAQWYRDLLVLERHFAGDLDYVSSSLQTLASSDNLLPPHVMAVLSAEDAKRAQETGRARAKELHLSAEAXXXXXXXXXXXXXXYREIVDKVGTLTPCLGTRPSIDARELALAEEKLVRVSAMISAFNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQANKRMDAQRACNEYNQAMFDVSKCEKRLADAKAYEQEALEDEEEAEQAVFETGQDINKVVAEMVDFKNRLVDPECEEEGIKRVVVKTRQAWNEAVLTVARIKEHCDSAVLRTACVWP 529
BLAST of mRNA_E-siliculosus-1a_F_contig1505.2940.1 vs. uniprot
Match: A0A6H5JDQ2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ2_9PHAE) HSP 1 Score: 500 bits (1288), Expect = 5.710e-172 Identity = 291/472 (61.65%), Postives = 348/472 (73.73%), Query Frame = 1
Query: 25 IFSGYRPEGKKRSLTEAYYVPPFGYSSGLKIG----EFSKRRRTESSSGVTSA-----SYRYSAPSPTLAPTVFTPAALKAMEQQVPVVRKPFYESELEVLLKNAQDHEMAMRAAFDAAAERKLHEATKRAAILTSDLVDAIFRGQRLSELHEEQEANAADIAKVVQEASATTPDVHRKLAESRAQVDAAEAKKDALLHVLSRESLLHCPPHDDVELTKLLEKHEACLKKVNGLRAQWYRDLIVLEWYFAGDLDYVSSSLQTLASSEDLLPPHVMAVLSAEDAKRAQETGRTRAKELHLSAEARYREIVERVGSLTPCLDIRPSTDARELALAEEKLVRVSAMISAFNLFRTAEANKRMDAQRARNEYNQAMSDVSKCEELLADAEAHEQAALEXXXXXXXXXXXXXXXXXXXXAEMNDFENRLVDPEYEEEGIKQVVVKTREAWNEAVLTVARIKDHC-DSAVLRTACVWP 1410
+ S YR + KRSLTE Y P +GL+ + +K RRT +SSG S + + +P+P T+FTPAALKAM+Q+VPV+ KP Y++ L++ LK AQDH++ MRAA+DAA +RKLHEA KRA I SDL+ RG +L +L++EQ+ NAA+ AKVV+EA ATT D+ RKLAESRA DAAEAKKDALL LS ES L CPPHDDVELTKLL++ E CLKKVNGLRAQW+R L VLEW++ GDLDYVSSSLQ+LASS+ LLPPHV+AVLSAEDAK AQ+TGR RA ELHLSAE RYR IV+ VG+LTPCL RPS +AREL LAEEKLVRVSAM+SAFNLFRTAE K+MDAQRA NE NQAMSDVS+CEELLA+AE HEQ AL AEM+D E R VD +++ IK++V + REAW+EA+LTVAR K H DS VLRT CVWP
Sbjct: 1 MLSEYRADANKRSLTEEYLPPSDSSLAGLECDLGTYDLTKTRRTGTSSGAASPPEPARTALHRSPTPR---TLFTPAALKAMKQEVPVLHKPSYDAGLDLRLKKAQDHDIDMRAAWDAA-DRKLHEAEKRAVIPASDLLHGTSRGLKLQDLYKEQQTNAAEKAKVVEEAGATTLDLQRKLAESRAHADAAEAKKDALLRRLSHESSLDCPPHDDVELTKLLDELETCLKKVNGLRAQWHRYLRVLEWHYTGDLDYVSSSLQSLASSDGLLPPHVLAVLSAEDAKCAQDTGRARAAELHLSAEDRYRGIVDEVGTLTPCLGTRPSIEARELGLAEEKLVRVSAMVSAFNLFRTAETYKKMDAQRACNEDNQAMSDVSQCEELLAEAEVHEQGALADQKEAEQAASETLQDTEKVGAEMSDVEKRFVDTADDDKAIKELVAEPREAWDEAMLTVARTKQHFNDSTVLRTGCVWP 468
BLAST of mRNA_E-siliculosus-1a_F_contig1505.2940.1 vs. uniprot
Match: D7G6F2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F2_ECTSI) HSP 1 Score: 437 bits (1125), Expect = 6.430e-148 Identity = 288/466 (61.80%), Postives = 331/466 (71.03%), Query Frame = 1
Query: 25 IFSGYRPEGKKRSLTEAYYVPPFGYSSGLKIG----EFSKRRRTESSSGVTSASYRYSAPSPTLAPTVFTPAALKAMEQQVPVVRKPFYESELEVLLKNAQDHEMAMRAAFDAAAERKLHEATKRAAILTSDLVDAIFRGQRLSELHEEQEANAADIAKVVQEASATTPDVHRKLAESRAQVDAAEAKKDALLHVLSRESLLHCPPHDDVELTKLLEKHEACLKKVNGLRAQWYRDLIVLEWYFAGDLDYVSSSLQTLASSEDLLPPHVMAVLSAEDAKRAQETGRTRAKELHLSAEARYREIVERVGSLTPCLDIRPSTDARELALAEEKLVRVSAMISAFNLFRTAEANKRMDAQRARNEYNQAMSDVSKCEELLADAEAHEQAALEXXXXXXXXXXXXXXXXXXXXAEMNDFENRLVDPEYEEEGIKQVVVKTREAWNEAVLTVARIKDHCDSAVLRTACVWP 1410
+ SGYRP+GKKRSLTE Y +PP S+GL+ +F+KRRRTES S VTS AP+ A T+FTPAA AMEQ+VPV KP Y++ L+ LLK AQDHE+ MR A D A ERKLHEA KR AI S+L+ RG L +L +EQ+ANAA+ AKVV+EA ATT D+ RKLAESRA DAAE KK ALL LS ES L CPPHDDVELT + ++HEACLKK +LASS+DLLPPHV+AVLSAEDAK AQ+TGR RA ELHLSAE +YREIV+ VG+L PCL RP DARELALAEEKLV+VSAM+SAFNLFRTAEANK+MDAQRA NEYNQAMSDVS+CEELL +AE HEQ A XXXXXXXXXXXXXXXXX ++ IK++V +TREAW+EAVLTVAR K H DSAVLRTACVWP
Sbjct: 1 MLSGYRPDGKKRSLTEVY-LPPSYSSAGLECDLHTYDFTKRRRTESGSAVTSG-----APN---ARTLFTPAAPNAMEQEVPVFHKPSYDAGLDRLLKKAQDHEIDMRGALDEA-ERKLHEAKKREAIPASELLLGTCRGLNLKDLAKEQQANAAEKAKVVEEAGATTLDLQRKLAESRAHADAAEVKKVALLRRLSHESSLDCPPHDDVELTNVQDEHEACLKK-------------------------------SLASSDDLLPPHVLAVLSAEDAKCAQDTGRARAAELHLSAEDKYREIVDEVGTLIPCLATRPLIDARELALAEEKLVKVSAMVSAFNLFRTAEANKKMDAQRACNEYNQAMSDVSQCEELLEEAEVHEQGARADQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKAIKELVAETREAWDEAVLTVARTKQHFDSAVLRTACVWP 425
BLAST of mRNA_E-siliculosus-1a_F_contig1505.2940.1 vs. uniprot
Match: A0A6H5J8M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M3_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.080e-22 Identity = 74/144 (51.39%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 145 ESSSGVTSASYRYSAPSPTLAPTVFTPAALKAMEQQVPVVRKPFYESELEVLLKNAQDHEMAMRAAFDAAAERKLHEATKRAAILTSDLVDAIFRGQRLSELHEEQEANAADIAKVVQEASATTPDVHRKLAESRAQVDAAEAK 576
ES SGVTS + A T+FT AALKAM+Q+VP DHE+ MRAA+DAA E +HEA KRA IL SDL+ RG +L +L++EQ+ NAA+ AKVV+ A ATT D+ RKLAESRA DAAEAK
Sbjct: 3 ESGSGVTSGTPH--------ARTLFTSAALKAMKQEVP-------------------DHEIDMRAAWDAA-EGGMHEAEKRAVILASDLLHGTSRGLKLQDLYKEQQTNAAEKAKVVEAAGATTLDLQRKLAESRAHADAAEAK 118 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1505.2940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1505.2940.1 >prot_E-siliculosus-1a_F_contig1505.2940.1 ID=prot_E-siliculosus-1a_F_contig1505.2940.1|Name=mRNA_E-siliculosus-1a_F_contig1505.2940.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=471bp MTRTESIEIFSGYRPEGKKRSLTEAYYVPPFGYSSGLKIGEFSKRRRTESback to top mRNA from alignment at E-siliculosus-1a_F_contig1505:89..2740+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1505.2940.1 ID=mRNA_E-siliculosus-1a_F_contig1505.2940.1|Name=mRNA_E-siliculosus-1a_F_contig1505.2940.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2652bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1505:89..2740+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1505:89..2740+ >mRNA_E-siliculosus-1a_F_contig1505.2940.1 ID=mRNA_E-siliculosus-1a_F_contig1505.2940.1|Name=mRNA_E-siliculosus-1a_F_contig1505.2940.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2826bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1505:89..2740+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |