mRNA_E-siliculosus-1a_F_contig1502.2924.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1502.2924.1 vs. uniprot
Match: D7FYC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC8_ECTSI) HSP 1 Score: 1185 bits (3066), Expect = 0.000e+0 Identity = 853/1000 (85.30%), Postives = 868/1000 (86.80%), Query Frame = 1
Query: 319 VKKERSNLVRAEKHPINSTTDVFATSAARPATKPVPPTPRSRQFTTPPVSPYYSPRRKEDAFPSRSNNNGDGSSLASGAAWSSFDCGDGSSVGGNNGSSSIASAAGIGNPALEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREATAERKRAKMFEAADRAXXXXXXXXXXXXXXXXXXXXXXXVVEDEAARQGAGMRFDEQDHLRRAQAKLAAERRAGLAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRIAALEDRVASFRIRQKEIEERXXXXXXXXAAELNRARHEAARRKIEGDAKRRADEVEGKVLREKRIAQXXXXXXXXXXXXXXXXXXXXXXXXXRMMERKAKADKERREAIRLKLEQDDAKVELLXXXKERLRVTRGKLSSETTKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAGAXXXXXXXXA--EPGGDRNRLGGADPDATAARRPNATAPRSVRPPGPHHRADMSVVRGGGADSLSPTAHSGSPRFPPPAQNDIITGARARAAPRPPPGPISSASVASITSSLSLLVRDGSRGXXXXXKTTPLTARATGNRRISPRKPGTSAGDKRGGSGRGGGNQREARVDNPAAAGLRERYMYATRVGQKRVGGGGARGVTRTATASKTKTPPGRKTHLVKTKELVADGLGHGRGGTTSSASETGREYVRPETGRRPLAGACDELGSGADDIEAYASMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYVGGKRSSAAATGGQIKGGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGGSGGAVRGDEQDRREEEAAVATREANRLEKELATERREASERVLRVSEAYEEALRKLSCDRQSSPPSLAVSRRDADSDAQ 3309
VKKERSNLVRA KHPIN TT VFATSAARP TKPVPPTPRSRQFTTPPVSPYYSPRRKEDAFPSRS+NNGDGSSLASGAAWSSF+CGDGSSVGG+NGSSSIASAAGIGNP LEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREA AERKRAKMFEAADRA VVEDEAAR RFDEQD LRR QAKLAAERRA LAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RIAALEDRVASFRIRQKEIEE XXXXXXXXAAELNRARHEAARRKIEGDAKR+ADEVEGKVLREKR+AQXXXXXXXXXXXXXXXXXXXXXXXX RMMERKAKADKERREAIRLKLEQDDAKVELL KERLR TRGKLSSETTKQ KMLQGHFEALK++SNGHSISYGELAAAVTAAG XXXXXXXX EPGGDRN LGGA+P A AARRPNAT PR+VRP GPHHRADMSV RGGGADSL P HSGSPRFPPPAQNDI TGARARAAPR ASIT+SLSLLVRDGS GXXXXXKT PLTARAT +RRISPRKP TSAGD+RGGSG G + R ARVDNPAAAGLRE YMY TR GQK VG G ARG TRTATASK KTP GRK LVK KE A GLGHGRGGTTSSASETGRE RPETGRRPLA A DEL SG+DD EAYASM XXXXXXXXX PGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYVGGKRSSAAATGGQIK GGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEG AVRGD QDRREEEAAVATR+A RLEKELATERREASERVLRVSEAYEEALRKLSCDRQ SPPSLAVSRRDAD DAQ
Sbjct: 14 VKKERSNLVRAGKHPINGTTAVFATSAARPPTKPVPPTPRSRQFTTPPVSPYYSPRRKEDAFPSRSDNNGDGSSLASGAAWSSFECGDGSSVGGDNGSSSIASAAGIGNPVLEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREAMAERKRAKMFEAADRARLARERSWQDREKISEREAAARRVVEDEAAR-----RFDEQDRLRRTQAKLAAERRAELAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIAALEDRVASFRIRQKEIEEXXXXXXXXXAAELNRARHEAARRKIEGDAKRKADEVEGKVLREKRVAQXXXXXXXXXXXXXXXXXXXXXXXXDRMMERKAKADKERREAIRLKLEQDDAKVELLRLEKERLRATRGKLSSETTKQRKMLQGHFEALKEYSNGHSISYGELAAAVTAAGXXXXXXXXXXXXEPGGDRNCLGGANPAAAAARRPNATTPRAVRPSGPHHRADMSVARGGGADSLFPAPHSGSPRFPPPAQNDIKTGARARAAPRXXXXXXXXXXXASITTSLSLLVRDGSHGXXXXXKTPPLTARATAHRRISPRKPSTSAGDRRGGSGSG--DHRGARVDNPAAAGLREWYMYDTREGQKLVGRGSARGGTRTATASKAKTPRGRKNRLVKAKETAAGGLGHGRGGTTSSASETGRENRRPETGRRPLAEASDELESGSDDFEAYASMSSSYSTDANSTXXXXXXXXXLPSSRPSSPRGEPGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYVGGKRSSAAATGGQIKDGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGXXXXAVRGDGQDRREEEAAVATRDAIRLEKELATERREASERVLRVSEAYEEALRKLSCDRQCSPPSLAVSRRDADRDAQ 1006
BLAST of mRNA_E-siliculosus-1a_F_contig1502.2924.1 vs. uniprot
Match: A0A6H5JGL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL3_9PHAE) HSP 1 Score: 1077 bits (2786), Expect = 0.000e+0 Identity = 762/1030 (73.98%), Postives = 783/1030 (76.02%), Query Frame = 1
Query: 310 NQFVKKERSNLVRAEKHPINSTTDVFATSAARPATKPVPPTPRSRQFTTPPVSPYYSPRRKEDAFPSRSNNNGDGSSLASGAAWSSFDCGDGSSVGGNNGSSSIASAAGIGNPALEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREATAERKRAKMFEAADRAXXXXXXXXXXXXXXXXXXXXXXXVVEDEAARQGAGMRFDEQDHLRRAQAKLAAERRAGLAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------GRIAALEDRVASFRIRQKEIEERXXXXXXXXAAELNRARHEAARRKIEGDAKRRADEVEGKVLREKRIAQXXXXXXXXXXXXXXXXXXXXXXXXXRMMERKAKADKERREAIRLKLEQDDAKVELLXXXKERLRVTRGKLSSETTKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAGAXXXXXXXXA--------EPGGDRNRLGGADPDATAARRPNATAPRSVRPPGPHHRADMSVVRGGGADSLSPTAHSGSPRFPPPAQNDIITGARARAAPRPPPGPISSASVASITSSLSLLVRDGSRGXXXXXKTTPLTARATGNRRISPRKPGTSAGDKRGGSGRGGGNQREARVDNPAAAGLRERYMYATRVGQKRVGGGGARGVTRTATASKTKTPPGRKTHLVKTKELVADGLGHGRGGTTSSASETGREYVRPETGRRPLAGACDELGSGADDIEAYASMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYVGGKRSSAAATGGQIKGGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGGSGGAVRGDEQDRREEEAAVATREANRLEKELATERREASERVLRVSEAYEEALRKLSCDRQSSPPSLAVSRRDADSDAQ 3309
N VKKERSNLVRA HPIN TT VFAT+AARPATKPVP TPRSRQFTTPPVSPYYSPRRKED FPSRSNNNGDG+SLASGAAWSSFD N SSSI SAAGIGNP LEAEAYRLEALRRRRFVELQQML FELRGLARE+RDRQLAEKAR REATAERKRAKMFEAADRA V EDEAAR RFDEQD LRR QAKLAAERRA LAAQKAALLQGRIDRGARVRRARQLRTE XXXXXXX G+ AALEDR EI XXXXXXXX LNRARHEAARRKIEGDAKR+ADE+EGKVLRE+RIAQ XXXXXXXXXXXXXXXXXXXXXX MMERKAK DKERREAIRLKLEQDDAKVELL KERL+ TRGKLSSE TKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAG XXXXXX EPGGDRNRL G+DP A AARRPNAT PR+VRP GPHH ADMSV RGGGADSLSP AHSGSPRFPPPAQNDIITGARARAAPRP SVASITSSLSLLVRDGS GXXXXX T PLTARAT +RRISPRKP TSAGD+RGGSGRG G+QR ARVDNPAAAGLRERYMY TR GQKRVGGGGARG T+TA ASKT P GRKTHLVKTKEL ADGLGHGRG TTSSASE+GRE + PE RPLAGACDELGSG DD EA SM XXXXXXXXXXXXXXXXXXXXXXX GASSSD DLLR RYDRELLAVLAEEQAAE REKALAAAVARAKAAQARAGY+G K +K G CPE QGVSPMSGGEPDGVVATTARLAIAAAP EG AVRG EQDRREEEAAVATREA RLEKELATERREASERVLRVS+AYEEA+RKLSCDRQSSPPSLA+SRRDAD D Q
Sbjct: 4 NVQVKKERSNLVRAG-HPINGTTAVFATTAARPATKPVPATPRSRQFTTPPVSPYYSPRRKEDTFPSRSNNNGDGNSLASGAAWSSFDXXXXXXXXXXNASSSIRSAAGIGNPVLEAEAYRLEALRRRRFVELQQMLTFELRGLAREKRDRQLAEKARTREATAERKRAKMFEAADRARLARERSWQDREKVAEREAAARRVAEDEAAR-----RFDEQDRLRRTQAKLAAERRARLAAQKAALLQGRIDRGARVRRARQLRTEXXXXXXXXERDAAAETAKSTTVTPHSDCLVDEKRDTKKTRRARESEHEAKKAAAAERWAAARAGVEEARRRRDAATKTLQEKAGGQTAALEDR---------EIXXXXXXXXXXXXXXLNRARHEAARRKIEGDAKRKADEIEGKVLREERIAQQREXXXXXXXXXXXXXXXXXXXXXXXMMERKAKTDKERREAIRLKLEQDDAKVELLRLEKERLQATRGKLSSEMTKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAGVGTXXXXXXXXXXXXXXXEPGGDRNRLRGSDPAAVAARRPNATTPRAVRPSGPHHCADMSVARGGGADSLSPAAHSGSPRFPPPAQNDIITGARARAAPRPXXXXXXXXSVASITSSLSLLVRDGSHGXXXXXMTPPLTARATAHRRISPRKPSTSAGDRRGGSGRGSGDQRGARVDNPAAAGLRERYMYDTRAGQKRVGGGGARGGTKTAAASKTNIPRGRKTHLVKTKELAADGLGHGRGETTSSASESGREKLHPE---RPLAGACDELGSGTDDAEAVTSMSSSYSTDAXXXXXXXXXXXXXXXXXXXXXXXXGASSSDTDLLRSRYDRELLAVLAEEQAAEDDREKALAAAVARAKAAQARAGYIGRK----------VKRGRCPEGQGVSPMSGGEPDGVVATTARLAIAAAPVEGXXXXAVRGVEQDRREEEAAVATREAIRLEKELATERREASERVLRVSDAYEEAIRKLSCDRQSSPPSLAISRRDADRDTQ 1005 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1502.2924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1502.2924.1 >prot_E-siliculosus-1a_F_contig1502.2924.1 ID=prot_E-siliculosus-1a_F_contig1502.2924.1|Name=mRNA_E-siliculosus-1a_F_contig1502.2924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1104bp MVASAMSGSDGSFSFDSPRSIEACRRRGVDQSDLEERPEESFLGQPPLKLback to top mRNA from alignment at E-siliculosus-1a_F_contig1502:4503..13546+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1502.2924.1 ID=mRNA_E-siliculosus-1a_F_contig1502.2924.1|Name=mRNA_E-siliculosus-1a_F_contig1502.2924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1502:4503..13546+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1502:4503..13546+ >mRNA_E-siliculosus-1a_F_contig1502.2924.1 ID=mRNA_E-siliculosus-1a_F_contig1502.2924.1|Name=mRNA_E-siliculosus-1a_F_contig1502.2924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1502:4503..13546+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |