mRNA_E-siliculosus-1a_F_contig15011.2922.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15011.2922.1
Unique NamemRNA_E-siliculosus-1a_F_contig15011.2922.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15011.2922.1 vs. uniprot
Match: D8LNI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 6.070e-57
Identity = 95/125 (76.00%), Postives = 96/125 (76.80%), Query Frame = 1 
Query:    1 FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFMKTFRPALQSARATWHKAVRLAVMIYILSVLESLSDEDSDQST 375
            FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM                            +LESLSDEDSDQ T
Sbjct:   42 FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM----------------------------MLESLSDEDSDQIT 138
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15011.2922.1 vs. uniprot
Match: D7FLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.580e-54
Identity = 96/125 (76.80%), Postives = 97/125 (77.60%), Query Frame = 1 
Query:    1 FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFMKTFRPALQSARATWHKAVRLAVMIYILSVLESLSDEDSDQST 375
            FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM                            +LESLSDEDSDQST
Sbjct:  214 FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM----------------------------MLESLSDEDSDQST 310
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15011.2922.1 vs. uniprot
Match: D7FHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA8_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.220e-53
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM 249
            FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMS GFWEPG MKCAAFM
Sbjct:    9 FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM 91
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15011.2922.1 vs. uniprot
Match: D7G1E3_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E3_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 4.560e-52
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 FSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM 249
            F+PMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM
Sbjct:  216 FAPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM 298
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15011.2922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNI2_ECTSI6.070e-5776.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLB4_ECTSI1.580e-5476.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHA8_ECTSI6.220e-5397.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1E3_ECTSI4.560e-5298.80Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15011contigE-siliculosus-1a_F_contig15011:2..1022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size366
Model size375
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15011.2922.1prot_E-siliculosus-1a_F_contig15011.2922.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15011 11..1022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.4100392-UTR-E-siliculosus-1a_F_contig15011:1..101622928013.4100392-UTR-E-siliculosus-1a_F_contig15011:1..10Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15011 2..10 +
1696318772.4139745-UTR-E-siliculosus-1a_F_contig15011:1..101696318772.4139745-UTR-E-siliculosus-1a_F_contig15011:1..10Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15011 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.4217443-CDS-E-siliculosus-1a_F_contig15011:10..2511622928013.4217443-CDS-E-siliculosus-1a_F_contig15011:10..251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15011 11..251 +
1696318772.4236577-CDS-E-siliculosus-1a_F_contig15011:10..2511696318772.4236577-CDS-E-siliculosus-1a_F_contig15011:10..251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15011 11..251 +
1622928013.4353304-CDS-E-siliculosus-1a_F_contig15011:897..10221622928013.4353304-CDS-E-siliculosus-1a_F_contig15011:897..1022Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15011 898..1022 +
1696318772.4324605-CDS-E-siliculosus-1a_F_contig15011:897..10221696318772.4324605-CDS-E-siliculosus-1a_F_contig15011:897..1022Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15011 898..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15011.2922.1

>prot_E-siliculosus-1a_F_contig15011.2922.1 ID=prot_E-siliculosus-1a_F_contig15011.2922.1|Name=mRNA_E-siliculosus-1a_F_contig15011.2922.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=122bp
MFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFG
MGRADPATNPWCRMSYGFWEPGGMKCAAFMKTFRPALQSARATWHKAVRL
AVMIYILSVLESLSDEDSDQST
back to top

mRNA from alignment at E-siliculosus-1a_F_contig15011:2..1022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15011.2922.1 ID=mRNA_E-siliculosus-1a_F_contig15011.2922.1|Name=mRNA_E-siliculosus-1a_F_contig15011.2922.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1021bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15011:2..1022+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCTCCCCCATGTTCGGCGGCAGCGCGGAGACCGCGGCGACTCCTGCAGT
TCACAGCGGCAGGCAGTCCGGAGGCGCAAACCGAGGTTTTACCGCCGGCA
TCTCCGTTGTCTGGAGTCACGCCATCATCGGCGACCAACAGCTGAACTTC
TCGTTTGGGATGGGGAGGGCGGACCCTGCCACGAATCCGTGGTGCCGGAT
GTCCTACGGGTTCTGGGAGCCCGGTGGGATGAAGTGCGCGGCGTTCATGA
GTGAGTGCTGTGTCTCTGTTTAGATATTTTGGTGGTCTTGTTGACGACTT
GCAATGGCACAAGGATTATGGCTAGGCCATGACGTATACCGGCTGTGCTG
TGATCGTAATATATACTATTTCTCCCGTACTAAGACTGACGTGAAACACA
CTACATTTCGCCTCGATGTCGAACATGGACGTTCACGCCACGCAACAAGC
CTACCACTTTCGTAGGAGTCGGACAAACGACCTGCTCTAATCGCACATGC
GTCCGGAAATAGACTTGCCTTGCTTGTGGCGGGCTGTTTATTATGGCGAC
TAGTACACGAGCGAGTATGAATACTGTCGGGTGACTCATTACAGATGTCT
CGCTGCAGCGCTACACCCGCGATTCACCGCCGTGGAACGTAACGTGATGC
GTTGCGCCGTCTGCATTTTCGGGGGGGGGGGGGGTGTACTAGGTATCATG
CATGCCGTAGTCGTTAGACCATAGACCTCGCATGGGAGGGGGAAGGGGGT
TGTTCCGATGTGGCAGCTACATTCTGTTTGTTGTCTCCTGGGTCGGCAAA
AGGTTCTTAACAGTTGTGCCCTCTTTGTCCATGCGTGCCTGACGAAGTCC
GTTCAAAACCGTCTGTCATTTACGTCTTAACGCCCACCAAACACAGAGAC
CTTTCGGCCCGCGCTCCAGTCCGCACGTGCCACGTGGCACAAGGCCGTGA
GGCTGGCCGTCATGATCTACATCCTCTCAGTGCTGGAGAGTTTGTCGGAC
GAAGACAGCGACCAGAGCACG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15011:2..1022+

>mRNA_E-siliculosus-1a_F_contig15011.2922.1 ID=mRNA_E-siliculosus-1a_F_contig15011.2922.1|Name=mRNA_E-siliculosus-1a_F_contig15011.2922.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15011:2..1022+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGGCGGCAGCGCGGAGACCGCGGCGACTCCTGCAGTTCACAGCGG
CAGGCAGTCCGGAGGCGCAAACCGAGGTTTTACCGCCGGCATCTCCGTTG
TCTGGAGTCACGCCATCATCGGCGACCAACAGCTGAACTTCTCGTTTGGG
ATGGGGAGGGCGGACCCTGCCACGAATCCGTGGTGCCGGATGTCCTACGG
GTTCTGGGAGCCCGGTGGGATGAAGTGCGCGGCGTTCATGAATGTTCGGC
GGCAGCGCGGAGACCGCGGCGACTCCTGCAGTTCACAGCGGCAGGCAGTC
CGGAGGCGCAAACCGAGGTTTTACCGCCGGCATCTCCGTTGTCTGGAGTC
ACGCCATCATCGGCGACCAACAGCTGAACTTCTCGTTTGGGATGGGGAGG
GCGGACCCTGCCACGAATCCGTGGTGCCGGATGTCCTACGGGTTCTGGGA
GCCCGGTGGGATGAAGTGCGCGGCGTTCATGAAGACCTTTCGGCCCGCGC
TCCAGTCCGCACGTGCCACGTGGCACAAGGCCGTGAGGCTGGCCGTCATG
ATCTACATCCTCTCAGTGCTGGAGAGTTTGTCGGACGAAGACAGCGACCA
GAGCACGAGACCTTTCGGCCCGCGCTCCAGTCCGCACGTGCCACGTGGCA
CAAGGCCGTGAGGCTGGCCGTCATGATCTACATCCTCTCAGTGCTGGAGA
GTTTGTCGGACGAAGACAGCGACCAGAGCACG
back to top