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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1500.2916.1 vs. uniprot
Match: A0A6H5J679_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J679_9PHAE) HSP 1 Score: 109 bits (272), Expect = 7.660e-29 Identity = 64/75 (85.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 118 DIAGVERRSALQLCCFSESSGDSSAAGAAVTGEPVAGVRLPAATAATTAKPSLRTTTAPRRAGTEDTGGGGTGMK 342
D AGVERRSAL LCCFSE SG SSAAGAAV EPVAG RLPAATAATTAKPSLRTTTA RAGTEDTGGGGT M+
Sbjct: 2 DTAGVERRSALPLCCFSELSGGSSAAGAAVIREPVAGARLPAATAATTAKPSLRTTTALHRAGTEDTGGGGTPME 76
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 342 |
| Model size | 344 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1500.2916.1 >prot_E-siliculosus-1a_F_contig1500.2916.1 ID=prot_E-siliculosus-1a_F_contig1500.2916.1|Name=mRNA_E-siliculosus-1a_F_contig1500.2916.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
ISPHAPFPRESQQCKRQRSPLHPQGGTEAKPTATRCSGKDIAGVERRSAL
QLCCFSESSGDSSAAGAAVTGEPVAGVRLPAATAATTAKPSLRTTTAPRR
AGTEDTGGGGTGMK back to topmRNA from alignment at E-siliculosus-1a_F_contig1500:26215..28922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1500.2916.1 ID=mRNA_E-siliculosus-1a_F_contig1500.2916.1|Name=mRNA_E-siliculosus-1a_F_contig1500.2916.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1500:26215..28922- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTAGTCCCCACGCGCCTTTCCCTCGTGAAAGTCAGCAGTGCAAACGACA
GAGGTCACCTCTCCACCCACAGGTACGTAGTGGCCTGTCTTTGTTGTCGG
GATTGAGACCCACAGATGATCAAGCTGTGTTTTTGAGCGACGGAGATCGA
TCACGGATGTACGGTACATACGTACATGCATACGCCACGCACACATGATC
TCGAAGACAAGGGTATTATAATAGAGGGATGAATCAGGTACTGTGGCTAC
AGCTGCGTTCGTTCTCTACATATGCATCATGCGTTTTCTCAAGCACCACA
CTCAGCAGCAGCGACGGTATTCTCAATCTCATTTTGTTGGTTGAGGTTGA
GCTTACGGTACAAAGGCGGGAGAACTTTTTGTTTCAGATGACAAGTCACG
CCGGTAACCATCGGTGAAGACTGCTGTCCCATAAAGGGTGCCGCCAACCA
CACGCCCGACGAACCTACTACTCAACATCTTCCTTCTACACCTTCCCAGT
ATAACATACAGATAGATGCACAAGACGGCCACTAAACTGTCTTGTTGAAC
CTGTTACCCCCATGGGGGAGATATCGCTCGTGTGCTGCTCAAGAAATCGT
GGAAATACAGGCAGCCTTCGCTGACGCTATGGATTCATTGCTAATCTGTG
TACAATATCTTCGGCTCTTTTCTATCGATAGAGATGGAATCGTTGGGTCA
TATCATGAATAATGCTTGTTTAAAATGCTGTGCATCACTTTCCGGCCCAG
GTCCTGCCCTCCCGCCCTTTGGGGATGGACTCCAAGTATTTCTGGGAAGT
GTGCGAAGCTAAGGCTAGGGCGCTTTCTTTGTTTCCCTAACCAGTGTTTT
CGAATTTTGCTCAACAAACATGTTCTCTTGCTGTCAGGACATACGAATGC
TGCTTGTTCGAAACATTACTTGTAGCCTCTCCGCCCAAGCATAGACTAGG
TAGGTACAGAGAGGCAACGAGACAAAGAGAAAGCAGTGACTATGGCTGGG
AGACGAACCACAGCAGAGCATATATGATGCATCACGGACTTTCGGTATAT
CGGCGACAGCGGTACTACATGTACAGTAGTATTCTCGGGATGCAAAACGC
GGGACGGGGTCCGAAAAATGAAGAGAAAAATGGTACACTGTACGTCAGCG
AACGATACATCGCACCCTCACCAAAACTCCTTGTCCGCACCTCGCGCACA
CCTACCTGTTGCTGCGCCGGAGAGTTAATAACATAGATACGTAGCTTGGG
TTAGCTTGGGTTTACACGTTTACACAGACGAAGTGGGAGCGCTTATCGGG
AAGAGGTGAGAGTGGAAAGAGCGGCGAATGCGCTCGCCCTATTTCTCTTT
CTCTCTCTCGGTTTCTGTCTTTTTCCTTGTCTCTGTCTCTGTCCCTGATT
CTGTCGGTCTCTGTCTGTCTGTCTGTCTCTGTGTCTCTCTTCTCTCTCTT
TTTCTCTCCCTCTCTCTCTCTAATGAATCCCAACAGCACGTCTCCCTTGT
CTCATGTGCTGTGTTCATGGAGTCTCGCCGGTACTACGTAAATTAGGAAA
CGAGGACTATTTCCCAAGTGTGGGCTATTGTGTGCGTTATCATTTTGTTC
AGAAAATACATATATTATATAGCCATCGTCTATATGTAGCTTCCAAAGCA
CGCTCTGGTGGTAGCTCGGAGAAGGTACAGGAGCATGCCGAACGTATACC
TCACACCCACCGACGATATAGTACCCCCCGCTCAATATACCACGCCGGGA
TACTTGTCAGAAGACGAAATGTTGTGGCACCGCTTGCGTTATCTTTACGG
TACACGTGAGCATGATGATATTGCCACGTTTTGCCTTCGCGCACCTGTTT
CTCTATCCAGGGCGGTACGGAAGCGAAGCCAACGGCAACAAGATGTTCGG
GCAAGGACATCGCGGGGGTAGAACGAAGGAGCGCGTTGCAGCTATGTTGC
TTCAGCGAATCATCAGGGGATTCATCGGCCGCAGGTATTTTGTGTACAGC
GATACGTTCGCTGTAGCACCCACATCTCAATCGGCATAAGTAGGGGGTGG
GTGGTGCGATGTGACTTGACTTTGTCGTTGCTTTGGTTCCTGCTGTTGTC
GGTGCAGCTGTCGACTGTCGTCGTCGTCATCGTCATCCGCCTTCCCTTTT
ACCGCACACAACCATGATCTGAGCATCTGTCTTGCGCTCGCCTTGACCGC
TCTGAATTTGTTGCTCAGTTTGCCGCCGCTGCGACTTGATGTTTGCGTAT
GCATACGAGCTGCTTTTCGTCTCCACTTTTCGCGCTCTTGTGAACTTTCG
AGACAACAACCTGTCTTCTTAACCAAACACGCCATGGTCTCTCTTTTGTG
GGTGTTTACCTGACATTCACCCCCCCTGCGACGTACCACCGCACAACGTC
AAGAATTGCCCGACACCAACTACAATAGTTCTCCAGACCTACACCCCCCC
TCAGGTTCCCACCCACCGAACCCCGCCCCCCCCCCTACACACACGCACCT
TCCGCTGTCCCGATCAAAACACACGCCTTCCAACAACCCGAACTACTGAC
TGACACGCAGGCGCAGCGGTCACAGGAGAGCCGGTTGCCGGCGTCCGGCT
CCCTGCGGCTACCGCCGCAACCACTGCCAAGCCCTCCCTCCGAACCACTA
CCGCCCCCCGCCGCGCCGGCACGGAGGACACGGGGGGAGGAGGCACGGGC
ATGAAGGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1500:26215..28922- >mRNA_E-siliculosus-1a_F_contig1500.2916.1 ID=mRNA_E-siliculosus-1a_F_contig1500.2916.1|Name=mRNA_E-siliculosus-1a_F_contig1500.2916.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1500:26215..28922- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTAGTCCCCACGCGCCTTTCCCTCGTGAAAGTCAGCAGTGCAAACGACA
GAGGTCACCTCTCCACCCACAGATTAGTCCCCACGCGCCTTTCCCTCGTG
AAAGTCAGCAGTGCAAACGACAGAGGTCACCTCTCCACCCACAGGGCGGT
ACGGAAGCGAAGCCAACGGCAACAAGATGTTCGGGCAAGGACATCGCGGG
GGTAGAACGAAGGAGCGCGTTGCAGCTATGTTGCTTCAGCGAATCATCAG
GGGATTCATCGGCCGCAGGGCGGTACGGAAGCGAAGCCAACGGCAACAAG
ATGTTCGGGCAAGGACATCGCGGGGGTAGAACGAAGGAGCGCGTTGCAGC
TATGTTGCTTCAGCGAATCATCAGGGGATTCATCGGCCGCAGGCGCAGCG
GTCACAGGAGAGCCGGTTGCCGGCGTCCGGCTCCCTGCGGCTACCGCCGC
AACCACTGCCAAGCCCTCCCTCCGAACCACTACCGCCCCCCGCCGCGCCG
GCACGGAGGACACGGGGGGAGGAGGCACGGGCATGAAGGCGCAGCGGTCA
CAGGAGAGCCGGTTGCCGGCGTCCGGCTCCCTGCGGCTACCGCCGCAACC
ACTGCCAAGCCCTCCCTCCGAACCACTACCGCCCCCCGCCGCGCCGGCAC
GGAGGACACGGGGGGAGGAGGCACGGGCATGAAG back to top
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