mRNA_E-siliculosus-1a_F_contig15.2907.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15.2907.1
Unique NamemRNA_E-siliculosus-1a_F_contig15.2907.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 959 bits (2478), Expect = 0.000e+0
Identity = 471/535 (88.04%), Postives = 490/535 (91.59%), Query Frame = 1
Query:    1 MFARTKRVPIAMSALVSMGQVSGQCISAPYVAWYPCGTPSILVQSTCDRARLFFHVHRETGCVSSNPIVTVDFTGPIASWGYTTGSDGELDADLSDDQLSLTFDIGEADLDPIFVESEDYYYWHFALYLDNCDTSYTWSDNFVQLSYVDDEQNTIDLSVFEDPDIDEPDTGICPTPSPVTPSXXXXXXXXXXTMRGTLDTYPPTPSPLWSPQPPTPHPTLRDEAXXXXXXSTSPVVEGSSVALGCYADDREARIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            MFA TK VPIA++ALVSMGQVSGQCISAPYVAWYPCGTPS  V S+CDRARLFFH+HRE GCVSSNPIVT DFTGPIASWGYTTGSDG LDADLSDDQLSLTFDIGEADLDPI+VESEDYYYWHFALYL NCDTSYTWSDNFVQLSYVDDEQN IDLSVFEDPDIDEPDTGIC                       TLDTYPPTP PLWSPQPPTPHPT+ DEAXXXXX STSP VEGSSVALGCY DDRE RIMDDLALSDYSMTTELCEQTC+GNTYFATQYGRECWCGSAGADYASHGES DCTY CAGDAD++CGGFDAANVYLYTGESTPSPTPSPTADESGPL+LGCYEDDRE+R MDDLALSD SMTTELCEQTCLGNT+FATQYGRECWCGSAGA+YTLHGESTDCTYACAG+ADQTCGGFDAANVYLYTGDDA +TSTFVGCYQDESDAR+MELALTDSSSMTKEMCEAECTG+TYFGMQYGRECFCGGSS DLLQHGES+ACDYECPGDSD+LCGGFYAMSVYSY
Sbjct:    1 MFAGTKSVPIAVTALVSMGQVSGQCISAPYVAWYPCGTPSTFVPSSCDRARLFFHIHREIGCVSSNPIVTADFTGPIASWGYTTGSDGYLDADLSDDQLSLTFDIGEADLDPIYVESEDYYYWHFALYLYNCDTSYTWSDNFVQLSYVDDEQNAIDLSVFEDPDIDEPDTGIC----------------------RTLDTYPPTPGPLWSPQPPTPHPTVGDEAXXXXXPSTSPPVEGSSVALGCYEDDREDRIMDDLALSDYSMTTELCEQTCVGNTYFATQYGRECWCGSAGADYASHGESADCTYACAGDADETCGGFDAANVYLYTGESTPSPTPSPTADESGPLSLGCYEDDRENRIMDDLALSDFSMTTELCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLYTGDDALSTSTFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGSTYFGMQYGRECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSVYSY 513          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 649 bits (1673), Expect = 6.430e-216
Identity = 422/934 (45.18%), Postives = 451/934 (48.29%), Query Frame = 1
Query:    1 MFARTKRVPIAMSALVSMGQVSGQCISAPYVAWYPCGTPSILVQSTCDRARLFFHVHRETGCVSSNPIVTVDFTGPIASWGYTTGSDGELDADLSDDQLSLTFDIGEADLDPIFVESEDYYYWHFALYLDNCDTSYTWSDNFVQLSYVDDEQNTIDLSVFEDPD-IDEPDTGICPTPSPVTPSXXXXXXXXXXT--------MRG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TLDTYP-------------------------------------------------------PTPSPL--------------------------WSPQPPTPHPTLRDEAXXXXXXSTSPVVEGSSVALGCYADDREARIMDDLALSDYSMTTELCE------------------------------------------------------------------------------------------------------------QTCLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            M    K + IA  AL+SMG+ S QCIS  YV WYPCGT S    ++CDRA LFF + RET CVSSNPIVT+DFTGPI S GY +GS   L  D SDDQLSLTFD+GE  LD  + ES  YYYW F LYLDNCDTSYTW DNFVQLSYVDDEQN IDLS FEDP  I+EPDTGICPTPSP    XXXXXXXX  T        MRG                                                                                                                                                                                                         ++D Y                                                        PTPSP                            S  PPTP PT+RDEA  XXXX       GS +ALGCY DDRE RIMDDLALSD +MTTELCE                                                                                                            QTCLGN YFATQYG+ECWCGSAGADY  HGES DCTY CAGDADQ+CGGFDAANVYLY GESTPSPTPSPTAD++ PL+LGCYEDDRE R MDDLALSDN+MTTELCEQTCLGNTYFATQYGRECWCGSAGA+Y LHGES DCTYACAG+ADQTCGGFDAANVYLYTGDD PTTS+FVGCYQDESDAR+MELALTDSSSMTKE CEAECTGNTYFGMQYGRECFCGGSS DLLQHGES++CDYECPGDSDQ+CGGFYAMSVYSY
Sbjct:    1 MLGGPKHLLIAAMALLSMGRASSQCISGSYVLWYPCGTIS---STSCDRAGLFFQIKRETNCVSSNPIVTIDFTGPIVSGGYASGS-STLWGDASDDQLSLTFDMGE--LDQRYSESGGYYYWLFNLYLDNCDTSYTWDDNFVQLSYVDDEQNAIDLSAFEDPYYIEEPDTGICPTPSPAXXXXXXXXXXXDATPAPTPAPTMRGAYCHGDPHCRTFDGLAFDCHGDGDFVLLNSADTGAMVHARFEPLVSPDASFTTGVAATEDGSSVIEVTVNDGERTILIDGEPYAYEGGDFPETMTGVTLTVTDQNVDMLFPSGLQVNARRWFTDPNYIGGVYVYAPLAMSTVGVLGTNNGNMADDWTDSTGETIGTGAASIAEGYNYCTSNWQPEVSLLSSPSRRLRRLQTSVDDYTAPVIPDVIPTDVEELCRDNTECIFDAIVVGLDVGAATLEAGDEFETEVEAAGGELPTPSPTVVQDPTSEXXXXXXXXXXXXXXXXPTGSLDPPTPSPTIRDEAPHXXXXXXXXXXXGSPLALGCYEDDREDRIMDDLALSDNAMTTELCELTCNGQTYFATQYGRECWCGSAGADYTLHGESTDCTYACVGDADQTCGGFDAANVYLYAAESTPSPTPSPTADDAGPLALGCYEDDREDRIMDDLALSDNAMTTELCEQTCLGNIYFATQYGQECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYKGESTPSPTPSPTADDASPLSLGCYEDDREDRIMDDLALSDNAMTTELCEQTCLGNTYFATQYGRECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYTGDDVPTTSSFVGCYQDESDARIMELALTDSSSMTKERCEAECTGNTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVYSY 928          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 550 bits (1418), Expect = 2.530e-179
Identity = 358/875 (40.91%), Postives = 399/875 (45.60%), Query Frame = 1
Query:    1 MFARTKRVPIAMSALVSMGQVSGQCISAPYVAWYPCGTPSILVQSTCDRARLFFHVHRETGCVSSNPIVTVDFTGPIAS----WGYTTGSDGELDADLSDDQLSLTFDIGEADLDPIFV--ESEDYYYWHFALYLDNCDTSYTWSDNFVQLSYVDDEQNTIDLSVFEDPDIDEPDTGICPTPSPVTPSXXXXXXXXXX---TMRG-------------------------------------------------------------------------------------------------------------------------------------------------------------------TLDT-----------------------------------------------------------------------------------------------------------------------------------------YPPTPSPL-------------------------------WSPQPPTPHPTLRDEAXXXXXXSTSPVVEGSSVALGCYADDREARIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            MFAR   + IA+SAL+ M  VSGQCIS PYV+W+ CG P      +CDRA +FFH++RET CVSSNP+VT+DFT PIAS    +GY  G    +  D+SDDQLS+TFD+GEA LDP +V  E++D+YYW+F + LDNCDT+YTWSDNFVQLSYVDDEQN IDLS FEDP+IDE DTGIC TPSPV P+             TMRG                                                                                                                                                                   T+D                                                                                                                                           PPTP+                                 W  QPPTP PT            +S     S  +LGCY DDRE RI+DDLALSD SMTTELCE  CLG+TYFATQYGRE                                             STP+PTPSP A  +GPLALGCYEDDRE R MDDLALSD SMTTELCEQTCLGNTYFATQYGRECWCGSAG EY LHGESTDCTYACAG+ADQTCGGFDAANVY YT +  PT+S FVGCYQDESDAR+MELALTDSSSMTKEMCEAECTGNT+FGMQYGRECFCGGSS DLL+HGESSAC+YECPGDSDQ+CGGFYAMSVYSY
Sbjct:    1 MFARPIELLIAVSALLHMDHVSGQCISTPYVSWHSCGVPHYANPQSCDRADVFFHIYRETNCVSSNPVVTLDFTAPIASSGDAYGYIEGDSTSISGDVSDDQLSITFDMGEAGLDPFYVLTETQDHYYWYFWVILDNCDTAYTWSDNFVQLSYVDDEQNIIDLSGFEDPNIDETDTGICSTPSPVAPTPVTDATPAPTPAPTMRGAYCHGDPHCQTFDGLYYDCHGDGDFVLLESADTGAVVHARFEPLVSPDASFTTGVAATEGGSSVIEVTVSDGERTILIDGEAYAYDEGDDLPATMTGVALTVTDQNVDMLFPSGLQVNARRWFTDPNYIGGVYVYAPLDMPTVGVLGTNNGNRADDWTDSSGETIDAGSASVAEGYNYCTSNWEAEESLLTTSSRLRSRRLQTSDYVAPVIPDVIPTDVEELCGDNTECIFDAIVVGLDVGAATLEAGEEFETEVQAAGGDVCEENAFSSDGLSPCTDCPDGETSGRGAVVCEAVSTPSPTVVEEPPTPNXXXXXXXVMDEAAXXXXXXXXXXXXXXXXXXVEWRTQPPTPSPTX----------GSSXTTGSSPDSLGCYEDDREDRILDDLALSDGSMTTELCELACLGSTYFATQYGRE---------------------------------------------STPNPTPSPAA--TGPLALGCYEDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRYTDESTPTSS-FVGCYQDESDARIMELALTDSSSMTKEMCEAECTGNTFFGMQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSY 817          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 502 bits (1293), Expect = 8.630e-166
Identity = 277/491 (56.42%), Postives = 325/491 (66.19%), Query Frame = 1
Query:    1 MFARTKRVPIAMSALVSMGQVSGQCISAPYVAWYPCGTPSILVQSTCDRARLFFHVHRETGCVSSNPIVTVDFTGPIASWGYTT----GSDGELDADLSDDQLSLTFDIGEADLDPIFVESEDYYYWH-FALYLDNCDTSYTWSDNFVQLSYVDDEQNTIDLSVFEDPDIDEPDTGICPTPSPVTPSXXXXXXXXXXTMRGTLDTYPPTPSPLWSPQPPTPHPTLRDEAXXXXXXSTSPVVEGSSVALGCYADDREARIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPT-------TSTFV--GCYQDESDARVM-ELALTDSSSMTKEMC 1428
            M A  K +  AM A++S+G  SGQC SA YV W PC        STC+ A+L+F +  E  CV+SNPIVTVDFT PI + G  +    G+   +  ++SDDQ+S+TF +GE+ +DP   +S     W  F + LDNCDTSYTWSDNF ++SYVDDEQNTIDLS FEDPDI+ PDTGICPTPSP                                              XX    + SP   GSS+ALGCY DD E RIMD+LALSD SMTTELCE TC+G+TYFATQY RECWCGSA ADYA HGEST CTY C+GD  Q+CGGF+AANVYLY  +STPSPTPSP  +   P ALGCY DD E R MDDL LSD+SMTTELCE TC G+TYFATQYGRECWCGSAGA+Y LHGESTDCTYAC+G+ DQTCGGFDAANVY Y  D  P+        ++FV  GCY D+ + R+M EL L+D S  T+  C
Sbjct:    1 MLAEPKHLLAAMMAVLSIGHASGQCASALYVFWGPCAN------STCESAQLYFPIQWEADCVASNPIVTVDFTAPIVNSGVASATVEGNSTTVYGEVSDDQMSVTFGMGESGVDPSSYDSG----WSGFLVSLDNCDTSYTWSDNFFEVSYVDDEQNTIDLSAFEDPDIEIPDTGICPTPSPXX--------------------------------------XXXXXXXXVTNAAASPTEAGSSLALGCYEDDPEDRIMDNLALSDSSMTTELCELTCVGSTYFATQYRRECWCGSADADYALHGESTGCTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSP-ALGCYADDPEDRIMDDLVLSDSSMTTELCELTCEGSTYFATQYGRECWCGSAGADYALHGESTDCTYACSGDTDQTCGGFDAANVYRYPDDSTPSPTPSPTEAASFVALGCYGDDREDRIMDELVLSDPSMTTEGKC 442          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 6.100e-164
Identity = 277/537 (51.58%), Postives = 313/537 (58.29%), Query Frame = 1
Query:    1 MFARTKRVPIAMSALVSMGQVSGQCISAPYVAWYPCGTPSILVQSTCDRARLFFHVHRETGCVSSNPIVTVDFTGPIASWGYTTGSDG-ELDADLSDDQLSLTFDIGEADLDPIF-VESEDYYYWHFALYLDNCDTSYTWSDNFVQLSYVDDEQNTIDLSVFEDPDIDEPDTGICPTPSPVTPSXXXXXXXXXXTMRGTLDTYPPTPSPLWSPQPPTPHPTLRDEAXXXXXXSTSPVVEGSSVALGCYADDREARIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            MF R     I + AL+SMG VS QCISAPY  WYPCG+ S  V ++CDRA L F + RET C +SNPIVTVDFTGPIA+ GY  G+D   +  ++S+DQ S TF+IGEADLDP +      YY+W   LYLDNC+TSYTWSDNFVQLSY+DDEQNTIDLS  EDP I + D   CPTPSP                                                                                                                                                         ++TP+PTP+PT D  GPLALGCY DDRE R MDDLALSD SMTTELCE TCLG+TYFATQYGRECWCGSA  +Y LHGESTDCTYACAG+ADQTCGGFDAANVY YT D++   S FVGCYQDES +R+MELALTDSSSM+ EMCEA+C GNTYFG+QYGRECFCGGSS DLL+HGESSAC+YECPGDSDQ+CGGFYAMSVYSY
Sbjct:    1 MFTRPIEPLIIVLALLSMGHVSSQCISAPYAWWYPCGSHSEDVPTSCDRAELRFRIRRETNCAASNPIVTVDFTGPIATSGYAYGTDSTSMSGNVSNDQSSFTFEIGEADLDPYYSTYGGGYYFWQLYLYLDNCETSYTWSDNFVQLSYIDDEQNTIDLSGSEDPFIHDSD---CPTPSPT---------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXDATPAPTPAPTVD--GPLALGCYGDDREDRIMDDLALSDYSMTTELCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYT-DESTAISAFVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSY 390          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 6.320e-155
Identity = 223/282 (79.08%), Postives = 247/282 (87.59%), Query Frame = 1
Query:  763 MDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGP-LALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            MDDL LSD SMTTELCEQTC+G+ YFATQYGRECWCGS GADY  HGESTDCTY C+GDADQ+CGGFDAANVY YT +STPS     T  E+ P +ALGCY DDRE+R MDDL LSD+SMTTELCE TCLG+TYFATQYGRECWCGS GA+Y LHGEST+CTY C+G+ADQ CGGFDAANVYL+TG+   +TS+ VGCYQDESDAR+ME ALTD+SSMT EMCEAEC+GNTYFGMQYG ECFCGG S DLLQHGES+ACDYECPGDS+Q+CGGFYAMSVYSY
Sbjct:    1 MDDLVLSDASMTTELCEQTCVGSIYFATQYGRECWCGSVGADYTVHGESTDCTYACSGDADQTCGGFDAANVYRYTDDSTPSXXXXXT--EAAPFVALGCYGDDREARIMDDLVLSDSSMTTELCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVYLFTGE--TSTSSLVGCYQDESDARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSY 278          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: A0A6H5JX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 1.610e-136
Identity = 280/633 (44.23%), Postives = 345/633 (54.50%), Query Frame = 1
Query:    1 MFARTKRVPIAMSALVSMGQVSGQCISAPYVAWYPCGTPSILVQSTCDRARLFFHVHRETGCVSSNPIVTVDFTGPIASWGYTTGS-DGELDA---DLSDDQLSLTFDIGEADLDPIFVESEDYYYWH-FALYLDNCDTSYTWSDNFVQLSYVDDEQNTIDLSVFEDPDIDEPDTGICPTPSPVTPSXXXXXXXXXXTMRGTLDTYPPTPSPLWSPQPPTPHPTLRDEAXXXXXXSTSPVVEGSSVALGCYADDREARIMDDLALSDYSMTTELCEQT-------------------------------------------------------------CLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPT-------TSTFV--GCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY**CHLHTYIVKPAGVASELVVQC 1674
            M    K + +AM A++S+G  SGQC SA YV W PC        STC+ A+L+F +  E  CV+SNPIVTVDFT PI + G  + + +G L     ++SDDQLS+TF +GE+ +DP   +S     W  F + LDNCDTSYTWSDNF ++SYVDDEQNTIDLS FEDPDI+     I          XXXXXXXXXX       T                      EA             GSS+ALGCY DD E RIMD+LALSD SMTTE+  +                                                              CL   +   +   +CWCGS+ ADYA HGEST CTY C+GD+ Q+CGG++AANVYLY  +STPSPTPSPT ++S  LALGCY DD E+R MD+L LSD+SMTTE                   CWCGSAGA+Y +HGESTDCTYAC+G+ DQTCGGFDAANVY Y     P         ++FV  GCY+D+ + R+M+  +    SMT E+CE  C GNTYF  QYG EC+CG +  D   HGES+ C Y C GD+DQ CGG+ A +VY Y      +    P    S L + C
Sbjct:   19 MMVEPKHLLVAMMAVLSIGHASGQCASALYVFWGPC------TNSTCESAQLYFPIQWEADCVASNPIVTVDFTAPIVNSGVASATIEGNLTTVYGEVSDDQLSVTFGMGESGVDPSSYDSG----WSGFLVSLDNCDTSYTWSDNFFEVSYVDDEQNTIDLSAFEDPDIE-----IXXXXXXXXXXXXXXXXXXXXXXXXXXXT----------------------EA-------------GSSLALGCYEDDPEDRIMDNLALSDSSMTTEVNRRCFRVPEDISPHTCCFIKSSNEKDYKLLHVGLALWSSFPRLYRNLPCRLRQPVFSTEPPTPLFCLRYLHLIPRTRAQCWCGSSDADYALHGESTGCTYACSGDSAQTCGGYNAANVYLYPVDSTPSPTPSPTEEDSS-LALGCYGDDPEARIMDELVLSDSSMTTE-------------------CWCGSAGADYAVHGESTDCTYACSGDTDQTCGGFDAANVYRYPDGSTPNPTPSPTEAASFVALGCYEDDREDRIMDELVLSDPSMTTELCELTCLGNTYFATQYGSECWCGSAGADYAVHGESTICTYACSGDADQTCGGYDAANVYRYTAEGTPSPTPSPTEAGSHLALGC 581          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 1.740e-114
Identity = 175/298 (58.72%), Postives = 220/298 (73.83%), Query Frame = 1
Query:  712 GSSVALGCYADDREARIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYASHGESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            G  ++LGC+ DD + RIMDD AL D SMTTELCE TC G++YF+TQYGRECWCG AG DY  HGEST+CTY C G+ D++CGGF AA+ Y Y   ST  PTP+ +        +GC++DD++ R M+      +SMTTELCE TC G+ YF+TQYGRECWCG AG +Y  HGEST+CTY C GN D+TCGGF AA+VY Y+  +   T ++VGC+QD+ D R+MELALT+SSSMT E+CE  C G++YF  QYGREC+CG +  D  +HGES+ C YECPG+ D+ CGGFYA SVY+Y
Sbjct:   26 GGPLSLGCFNDDGDDRIMDDRALVDTSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASAYAY---STVEPTPTFSY-------VGCFQDDQD-RIMELALTESSSMTTELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTESSSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAY 311          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.420e-93
Identity = 141/163 (86.50%), Postives = 150/163 (92.02%), Query Frame = 1
Query: 1117 MTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            MTTELCE TCLG+TYFATQYGRECWCGSAG +Y LHGESTDCTY CAGNADQTCGGFDAANVY YT +  PT+S FVGCYQDESDAR+MELALTDSSSMTKEMCEAECTGN YFGMQYG ECFCGGSS +LL++GESSACDYECPGDS+Q CGGFYAMSVYSY
Sbjct:    1 MTTELCELTCLGSTYFATQYGRECWCGSAGMDYALHGESTDCTYGCAGNADQTCGGFDAANVYRYTNESTPTSS-FVGCYQDESDARMMELALTDSSSMTKEMCEAECTGNRYFGMQYGSECFCGGSSTNLLENGESSACDYECPGDSEQECGGFYAMSVYSY 162          
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.100e-66
Identity = 128/189 (67.72%), Postives = 139/189 (73.54%), Query Frame = 1
Query: 1039 GPLALGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGSAGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVGCYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSSNDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY 1605
            G LA+GCY DDRE R MDDLALSD SMTTE+                      SA   Y              G+ADQTCGGFDAANVY YT  +APT+S FVGCYQDESDAR+MELALTDSSSMT E+CEAECTGNTYFG+QYGRECFCGGSS DLL+HGESSAC+YECPGDSDQ+CGGFYAMSVYSY
Sbjct:  298 GSLAVGCYGDDREDRIMDDLALSDYSMTTEVLLT-------------------SAVRAYMPWKHLLRHPVRARGDADQTCGGFDAANVYQYTDGNAPTSS-FVGCYQDESDARIMELALTDSSSMTMEICEAECTGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSY 466          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15.2907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRS2_ECTSI0.000e+088.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS1_ECTSI6.430e-21645.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE6_ECTSI2.530e-17940.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEK9_ECTSI8.630e-16656.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTD7_ECTSI6.100e-16451.58WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
D8LEL0_ECTSI6.320e-15579.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX48_9PHAE1.610e-13644.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNS1_ECTSI1.740e-11458.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE8_ECTSI2.420e-9386.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTD8_ECTSI1.100e-6667.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15contigE-siliculosus-1a_F_contig15:126256..134918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1608
Model size2949
Exons10
Ec32 orthologEc-08_000110.1
Ec32 ortholog descriptionCarbohydrate-binding WSC, subgroup
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGH3
COG Functional cat.U
EC3.2.1.37
EggNOG OGsKOG4157@1,KOG4157@2759
EggNOG free text desc.protein xylosyltransferase activity
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ReactionR01433
KEGG koko:K15920
KEGG rclassRC00467
Seed eggNOG ortholog2880.D7FRS2
Seed ortholog evalue5.3e-279
Seed ortholog score966.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928011.198473-CDS-E-siliculosus-1a_F_contig15:126255..1264381622928011.198473-CDS-E-siliculosus-1a_F_contig15:126255..126438Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 126256..126438 +
1696318771.4131124-CDS-E-siliculosus-1a_F_contig15:126255..1264381696318771.4131124-CDS-E-siliculosus-1a_F_contig15:126255..126438Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 126256..126438 +
1622928011.2125573-CDS-E-siliculosus-1a_F_contig15:126713..1270501622928011.2125573-CDS-E-siliculosus-1a_F_contig15:126713..127050Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 126714..127050 +
1696318771.4267151-CDS-E-siliculosus-1a_F_contig15:126713..1270501696318771.4267151-CDS-E-siliculosus-1a_F_contig15:126713..127050Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 126714..127050 +
1622928011.4142938-CDS-E-siliculosus-1a_F_contig15:127546..1276121622928011.4142938-CDS-E-siliculosus-1a_F_contig15:127546..127612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 127547..127612 +
1696318771.4417462-CDS-E-siliculosus-1a_F_contig15:127546..1276121696318771.4417462-CDS-E-siliculosus-1a_F_contig15:127546..127612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 127547..127612 +
1622928011.4256725-CDS-E-siliculosus-1a_F_contig15:128366..1285841622928011.4256725-CDS-E-siliculosus-1a_F_contig15:128366..128584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 128367..128584 +
1696318771.4541128-CDS-E-siliculosus-1a_F_contig15:128366..1285841696318771.4541128-CDS-E-siliculosus-1a_F_contig15:128366..128584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 128367..128584 +
1622928011.4362814-CDS-E-siliculosus-1a_F_contig15:129276..1293331622928011.4362814-CDS-E-siliculosus-1a_F_contig15:129276..129333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 129277..129333 +
1696318771.4681976-CDS-E-siliculosus-1a_F_contig15:129276..1293331696318771.4681976-CDS-E-siliculosus-1a_F_contig15:129276..129333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 129277..129333 +
1622928011.4485514-CDS-E-siliculosus-1a_F_contig15:130110..1303771622928011.4485514-CDS-E-siliculosus-1a_F_contig15:130110..130377Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 130111..130377 +
1696318771.479232-CDS-E-siliculosus-1a_F_contig15:130110..1303771696318771.479232-CDS-E-siliculosus-1a_F_contig15:130110..130377Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 130111..130377 +
1622928011.467206-CDS-E-siliculosus-1a_F_contig15:131087..1311441622928011.467206-CDS-E-siliculosus-1a_F_contig15:131087..131144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 131088..131144 +
1696318771.486649-CDS-E-siliculosus-1a_F_contig15:131087..1311441696318771.486649-CDS-E-siliculosus-1a_F_contig15:131087..131144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 131088..131144 +
1622928011.4802122-CDS-E-siliculosus-1a_F_contig15:131658..1318951622928011.4802122-CDS-E-siliculosus-1a_F_contig15:131658..131895Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 131659..131895 +
1696318771.4947333-CDS-E-siliculosus-1a_F_contig15:131658..1318951696318771.4947333-CDS-E-siliculosus-1a_F_contig15:131658..131895Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 131659..131895 +
1622928011.4957085-CDS-E-siliculosus-1a_F_contig15:132194..1322511622928011.4957085-CDS-E-siliculosus-1a_F_contig15:132194..132251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 132195..132251 +
1696318771.5046022-CDS-E-siliculosus-1a_F_contig15:132194..1322511696318771.5046022-CDS-E-siliculosus-1a_F_contig15:132194..132251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 132195..132251 +
1622928011.5139973-CDS-E-siliculosus-1a_F_contig15:133448..1335771622928011.5139973-CDS-E-siliculosus-1a_F_contig15:133448..133577Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 133449..133577 +
1696318771.521051-CDS-E-siliculosus-1a_F_contig15:133448..1335771696318771.521051-CDS-E-siliculosus-1a_F_contig15:133448..133577Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 133449..133577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928011.5288134-UTR-E-siliculosus-1a_F_contig15:133577..1349181622928011.5288134-UTR-E-siliculosus-1a_F_contig15:133577..134918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 133578..134918 +
1696318771.5322618-UTR-E-siliculosus-1a_F_contig15:133577..1349181696318771.5322618-UTR-E-siliculosus-1a_F_contig15:133577..134918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 133578..134918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15.2907.1prot_E-siliculosus-1a_F_contig15.2907.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15 126256..133577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15.2907.1

>prot_E-siliculosus-1a_F_contig15.2907.1 ID=prot_E-siliculosus-1a_F_contig15.2907.1|Name=mRNA_E-siliculosus-1a_F_contig15.2907.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=536bp
MFARTKRVPIAMSALVSMGQVSGQCISAPYVAWYPCGTPSILVQSTCDRA
RLFFHVHRETGCVSSNPIVTVDFTGPIASWGYTTGSDGELDADLSDDQLS
LTFDIGEADLDPIFVESEDYYYWHFALYLDNCDTSYTWSDNFVQLSYVDD
EQNTIDLSVFEDPDIDEPDTGICPTPSPVTPSSSMPAPTPTPTMRGTLDT
YPPTPSPLWSPQPPTPHPTLRDEAPPTPSPSTSPVVEGSSVALGCYADDR
EARIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYASH
GESTDCTYTCAGDADQSCGGFDAANVYLYTGESTPSPTPSPTADESGPLA
LGCYEDDRESRTMDDLALSDNSMTTELCEQTCLGNTYFATQYGRECWCGS
AGAEYTLHGESTDCTYACAGNADQTCGGFDAANVYLYTGDDAPTTSTFVG
CYQDESDARVMELALTDSSSMTKEMCEAECTGNTYFGMQYGRECFCGGSS
NDLLQHGESSACDYECPGDSDQLCGGFYAMSVYSY*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig15:126256..134918+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15.2907.1 ID=mRNA_E-siliculosus-1a_F_contig15.2907.1|Name=mRNA_E-siliculosus-1a_F_contig15.2907.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8663bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15:126256..134918+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGCGAGGACGAAGCGTGTTCCCATCGCCATGTCGGCTCTCGTGTC CATGGGTCAGGTGTCCGGCCAGTGTATCAGTGCGCCCTACGTGGCTTGGT ACCCGTGTGGAACGCCTTCCATTTTAGTTCAATCAACGTGTGATCGAGCT CGTCTATTTTTCCACGTCCATCGGGAGACCGGCGTGAGTGGTGCAATGCG TGTAAATCACACAGCTTTGGTTGGCCTTGGTGGCATGAGAGACATGTTCG ATGTTGCGCAAAAATAGAATAAGCGTGTACCCATAGTGCGCATGGAGAGA AATGGATGGGTACTCGTGTCTTCGTCCAGAGCAGGTATCGTCCGACATAT GCGTTCCTTGGGGTACGTTTGGCAACATTCTTTCGCAGTGACGTCCAACT TGAAAACGTCCGTTGCTGTCGCTCCCCCCCGCTTGGTGTGTGACGTTGTC CTTCGCAGTGCGTGTCATCGAACCCGATCGTGACAGTCGATTTCACGGGG CCTATTGCGAGCTGGGGATATACCACGGGCAGCGACGGCGAACTAGATGC GGACCTATCCGATGATCAATTGAGCCTCACCTTCGACATTGGCGAGGCTG ATCTCGATCCTATTTTCGTCGAATCAGAGGATTACTATTACTGGCATTTT GCCCTTTATCTTGACAACTGTGACACCTCCTACACCTGGAGCGACAACTT CGTCCAGCTGTCCTATGTCGACGACGAGCAGAACACCATCGACCTGTCCG TCTTCGAAGATCCTGACATCGACGAACCGGACACCGGGATATGTCGTGAG TACGGTTCTAGCGGTAGCGCCAACTGTAGCATCGCGGTAATATTCGCGAA CAACTACTTGTATGCCTGCGTTCCATTCACCTCTGTGTCTTCTTTACATG AGCTGTAACCATAGTAAACCGCCTGCGCCGAGGGGCCTTTCAATTTTTCT TCCATGGTCGCCGGTTATTCGGGGTTCCAGGAGCCGCACATGACCCCGAA TCCCCTAGGACCCCGGATATCCGGCGACAGGGGAAAACAAAAGAAACGGC CCTCCAGACAACGTTTCGTACTCTAACCCAATGTACATGTGTGCAAAGTT TCAAAGTCTAACTCCCAAAAAAGGCGTAAAGTGTTCATGTTGAATATAGT CTTGTATCTATTTCCTTGATACAGTTCAGACGCACTCCGAAGACGTCGAT ATTTTGAATGCAAGGTCGAAGTATAGATGGCAGTCTCCCGCTTTTCCACC ACTCCCGCCCGTGTCGTTCCCTTCTTCTCCTGTCCTGGCAGCCACTCCTA GCCCGGTCACGCCATCGTCGTCCATGCCTGCTCCCACTCCTACCCCGACC ATGCGTGGTGAGGCAGACTGATGGATGCATTGCCCTATTCTCCTACGTTC AGTACACTTGACTGGCCGCAGCGTCGGGCAATACCCAGACAAACAAGACA AGCTGAAACTGTGTTATCATCCCATCTATTCTGCTGGGCGCCAACTCCTA CGCCTTTCGGTGCATTCTGCGGCTGTACCAGTCGGGGTCAAAACACGAGG AACGTCGGTAATATGCTACGTAGGTTGTCCTCTATTTTCCAGCACGTTTC GTGTGAGGTGCTTTGTCGCTGTAGAGATGAGATGAAGGCGGCAGCCCTCG TCGAGACTGTCTCGAGTTTGGGAAAGCCTCTCACTGCAAAGTATTGCGTA ATGTCCCACTTCCTGCGAATTCAACGAGGCTTGAATTCACGACCAAAGCC GATTGCCCAGGGGGGTAAACCTCCGACAGGAGTGCCGTCGTGTGTAAACT TATTCTGTGTTCAGTCACCACGCACGGTACATAAGAAACGCGATCTGTTC ACGGACGTTTCGATTCGAAGTCGACCCCTTACGACACAGCAGTAGAACGT TTTCCTGACAAGGTTGATTTTTGGTATTGTCTAGCGCCTACTGCACACGC CGCTAACTTCAGAATATTTCCGCTTGATGGGCTAACCGCTTGGCTGCAAG ATGTGCAACATCTGCCACCTAAGCAAGAATATTGATTCTGCGTCTCAGCC ATTAAATGACCAGCCAGTGCTTCCTCCGCCACCCTTGCCGACCCGTCCCG TTCTCCACCAGGCACGCTTGATACCTACCCTCCCACTCCCAGCCCATTGT GGAGCCCACAACCTCCCACGCCCCACCCCACTCTTAGAGATGAAGCGCCT CCTACTCCCAGCCCGTCTACCAGCCCTGTGGTAGAAGGATCCTCTGTTGC ACTTGGGTGCTACGCGGACGACCGCGAAGCCCGTATCATGGACGACCTCG CTCTTTCCGACTACTCGATGACAACCGAGGTGATACAAATGTTCGACAAA TTTTCGCACTGCTTTCGGTTTGTGTAGAGACGGAGAGGCGGAGAGACACA GAGACATGAGTGCGAGGAGTCCCTCAAGAAAACACCCCCCGAGATGCAGT CATCACCTCGGGACTCGAACGTACCAGGTCTCTCTAAAGTTGAATATCAT ACGGACCAGACGAGGGTCAGCTTCTTGTTCCTGTTGAATTTCTCTAGGCA TATCTAAACTTAGCATGTCTCGGCTGGTAGATGCTTTGCAGTCGCCGGTC ATATCATATGTCGCCATACACTACAGACGCTCGGCGTGTTCACGGCAATC TCTTTTTCACAGTCCCGCGTGCCGCGTCGAAGACCGGCCTCGTGTGGGTT GCTCACAGGAACGCCGAATCTCTATATGGGTTACCCTGTGTCTCATGATA TTGCGGAGCTAAACCGAATGGGCTGAATGGCAACCAAAAGACCAACTATA CACTCCAACGTGAACAAGATTCGAAATGCGTAGAAGATATTGCGCACTTC TATTGTAGCCGTTGGGATGATGCGTGTATCTTGTCGACAGCCATCCTTTT GATCAACGTCTTTCTTTTTTTCTTTGCACCATGTTCAAAACGCATGTCCG TTTGCGTGTTTGCTGCCTTTCCCTCTTCCCCCTGCCGGTATTGAATCTAC TGTACTTGTTTCTAACGACAGCTGTGCGAGCAAACATGCCTCGGAAATAC CTACTTCGCCACTCAGTACGGGCGGGAGGTGAGTTCAAGTAGATGACGAT GAGTCAGGTGCTGGAAGGATTCGGATGGTTTCGTTTTTGCGGGAAGCGTT TCGACGGGACAAGTTGAAACCATTTTGGATGTGTGACTTCTGATCGTCTT CTCCTGCGACATGTCGGAAAGAGGTTCAGTACACACACCGGTTCCCAAGC AGCCCTTCTACGCTTTCTTTCCCGGGCAAGTAGAACTATCTAGTGCGACG CTCATGATGCGCTGCCCTTGGTCCTGTACTAACTTTGAGCGTTCCGTTGT CGTTCTAGCTTAAGAGTTTTAGCACGTTTGTCAATGGGGACCAACAACAC AACGACGACAATGGCAAGCAGCTCGTATCATATGCAAGAGCAGTGGAGGC TGTTTTGCGAGTCTTGGTCGGTGAATGCCCGAGGAAAGGATGAAAGTGCG TAGACGATCCGTTCAATCCTCTACGCATAAGAGCGTGAAAATTGAGTAGG GGTTCTATTTCCCTTTTTCAATTTTATGTCGATGGACAAAGTTCTGAAAT CGTACTGGTGAATTGTTTCGTCTATGCGCTCTGAGCGGCGTTGGTCCCAA GCAGATATTTTATGCATTGGAACGTAAACCGAACTGACTACAAGGCTCTG CCTGTCCGGCTGGCCGTATGGTCGAGCTTTCGTCGTCTCCACCAAAAGCC TCAAGATTGTGTATCTGTTGCCTTTGCCAATTCTGTGGAGGTCTTGGTCA AAGCACGTCCCGCCCATCTGTCTGTGTTGCCTCAACCTGAATCAAATACA CAAAGTGCTGGTGTGGTTCGGCTGGTGCGGATTACGCTTCGCACGGGGAG TCCACCGACTGCACCTACACCTGCGCAGGAGACGCTGACCAATCGTGCGG CGGATTCGACGCCGCCAACGTCTACCTTTACACGGGCGAGAGCACTCCCA GCCCCACTCCTAGCCCCACGGCAGACGAATCTGGCCCTCTTGCACTTGGG TGCTACGAGGACGACCGCGAAAGCCGTACCATGGACGATCTCGCTCTTTC CGACAACTCCATGACAACCGAGGTGATCACGTAGAATGCTACGGATATTG TGTTTGTTTCATTCCCTTCATCAATGTCAGCTTTGTTTGGTTCGTGCGAA GATGTACCACGACCAGAGGTACGCCCCCATAGTGTTTTAGCCGCACATCA CCAGGCGCAAATCATGTTACTCTCGATTTGCAATGCTTGGGAGGAGCTTC CTCAAGCAAGACCCCGAAAATGCGGAAACTGATCTTGCTGCTTGGTGTTG CAACATGTCCGCTACTCTGGAGCCATGTCAACGTGACGCCTAGCTACTGC GGGTAGGTGATGTCTAAAGTCCACACCCGTTGGCTCTTACATCGAAGTTT GCTGTGGTTGGCCGTACTTCAGTCACGCTACGCAACCACAACAACAAGGT CCCTGCACGGCCTCCCCAGGCGATCGGTGTAGCATGGACTGCACTGGCGC ACCGACTCTATGAATCGATTCGGCTGTACCTCGTGGTGCTGCGTGGTTGT GACTAGTGTAGTGAATGGCAAGGAAGTACGGTATCCGTTTCCACCTGTGC TCCTTGCATGAACGTCCAACCCATAGATTTTGTTTTTTGGGTATCGGAAC CTATCCGAGTGCCGTCAAGTTCGAAATTATACGGCCACTGCTGTTCTATT TTTTCGACACGTTGAGTTTGGTGTTTGCTCCCATTGCCTCTTCGCGCTGT CTTTTTCGTCGTTTTCGTGTTTCTGACATCAGCTGTGCGAGCAAACATGC CTCGGAAACACCTACTTCGCCACTCAGTACGGGCGGGAGGTGGGTTCAGG TAGATGGCAGTAGCCTTGACGATCATACATGTTTTGGAATACAACCAACT CGAATCATCGTTCGGCGATCGCGTTGTCATTTTGGGGGCTCTTTTTCGTC GTGCTGAATTCCGCTTTACGTTCCGTGATTACGGTAGGAATAGTCGTCTT GCCGATTGTGTCAGCATGGCGCACACCAGGTACTGAAGACGTGCTGACGA AAGTGATCGGGTTGGGAATCGCGTCTATAATCAATGTGCGCCTATCGAAC ACAAGTGTTTGCGTTGTGGCTGTTCAAAAACAGGACGCTCCAAGCAATAT TTCGGACATCCCTAACTACATAGACCTGAGGACTACGATTCCGAGGTTCT ACCCGTCAGATTGCCGGTATGGCTGAGCTTTCCCTCCCTCGGCCAAACGT CCCGTCCTCTCTGTCTGTCTGTCTCTCTGTCTGCCTTGCCTGTACGTCTG TCTCTGTCTGTTTGGCTCTCTGTGTTGTCTCTACCTCAAATACACACACG CAGTGCTGGTGTGGTTCGGCTGGTGCGGAATACACTTTACACGGGGAGTC CACCGACTGCACCTACGCCTGCGCAGGGAACGCTGACCAAACGTGCGGCG GGTTCGACGCCGCCAACGTCTACCTTTACACGGGTGACGACGCGCCTACG ACATCAACGTTCGTGGGATGCTACCAAGACGAGTCGGACGCACGCGTCAT GGAACTCGCGCTGACGGACAGTTCTTCCATGACCAAGGAGGTGCGAGGGA GGTTGTTGTTGTCGGTGTGATACTGATCGGTTATTTTTAGCTCAGGTTTT CTGTGTATTTTTTCTCTTTCGGTGTTGAACATACGATACAACACGACCAA TCCTCCTGATGATGTGCCTAATGCTCACGAGCACCACCTGCCTACCTCTA TCGGTAGCAAACTCAACGTCGTTTCCATATCGAGCAGTTGGTCTTGAAGC CTCAGCAGCGACAGCTTCCTTCTCGATGTCGATAGAAAAAATTGCTCTTG CCCCTCGTGTTGCGCCTTTGATACCGGTTGGTTTTGCAGATGTGCGAGGC CGAGTGCACCGGAAACACGTACTTCGGCATGCAGTACGGGAGGGAGGTGA GACGCGGTTGCTTGTGATACAATCATACGAAGAAGCAAGTCGCTTTGCTG CTTGATCGTGATGAAGGTTTGGTTGTGTAGGCGGGTGTGACAGGACCGAG ATACGCTAAGGATCTAATCCCCTGTGTCCGTAACCGAATAGCGCAGCCTT GTTGAGCAGACGATGGAGACATTTCTTCAAACGCTGGTGGCCTTGAACAT CCGATTATGATCGACCGCCGCCCCAACGTCCCACCTCCCCCGTGGACACT GATCCCCAACAGAGGAATCACGCTGTTCACATGCATCTATCATCCAACAC GAAACAGTAGTTGTTGTTGTTGTTGTCTTCACATTAAATGAAAACGTTCC GTTCTCTCTGCCCAGCACCTTCTTCTGTCCGTACTAGTCTAAGACTTGAC GGGGTCGATTCCCGTGATCGCAGGCTAACTTACCAAAAAAATGTGTACGA AACTAAAATGGACCCTAAGGGTCCGCAAGTCAATAAAAGTCAACGATAGA TAGACTAGGTCACTCCGCTCGCCCCCTACACGCTATGCGAGATAACCCTA GACTGGAAAAAAGAAAGAAAAAAGAAAAACAGAAAGAAGATATTAGATGG AGAGAAGGGAAAGAGAAGGAGAAAGACACAGACAGAAAGACACACGCCGT GACAAACGACAAACAAACAAACACACTAGCACAAGACAACACAAAACAAC ACAAAGCGGCCCCTCCGAGCCATCAAATGCACGTCATCGTTCGCGGGGGG TTGGTGCAATGGTGAAGTGGCCGGAGGGGGGGGTAAGGCAAGCAAGGGGT TCAATCCGGCACAGCGTTTCGCGCCACTCGGTCTGGTTCTTCGCGTTCCT GTCTTCCCTCGCCGTCTCGTCTGCCTGCTGTACCAGTGGTTATTGCCGTG TCCGTGTTGTTGCCGGGCATTTTGTGTCGTTTGAGCGCTCGTTGTCGGCT AGCCTCCTCTTCCTTCTTGTGCCAGGAGGTCATGAACCTCTGAGCTCCCT GCAGTACCCCTATATGCCACGGTACACCCCGATACACCTTTGCCAGTGGT ATTCACGAGAGCCATACAGGACACACCGGTGCTGGACAAGACACAACCAA ACATCAATGGAGTGGCCACTAGCAGCTAACAGCACCCACAAATTCCATTT CGTACTGTCTCCATGTCTGTCTGCCATGAATCTTCTCTTACAGTGCTTCT GCGGTGGGAGTTCAAACGACCTCTTGCAGCACGGGGAGTCGAGTGCCTGC GACTACGAGTGCCCGGGGGACTCAGATCAATTGTGCGGAGGATTCTACGC CATGAGCGTGTACTCCTACTAGTAGTGTCATCTTCACACGTACATTGTGA AACCTGCTGGCGTGGCGTCAGAATTGGTGGTGCAGTGTAGTCTAGCTACC GCAATTCGCAGACTTGGTAATCTCCCATGACAGCATGGGGGAGATGGCCA AATAATTCGTGGACGCATCAATTGATCTGTTTTCACGGTACGAAAGGTCT AATTCGGCATGGGTGCTGCACCCACCTAATAGTTTATCTCTAATGCATAG TCTATATCAATGTTTGGTGTCGCTGTCGAGGACGGCACGTTTACTGTGCG TGAAGTTTCATGAGGTAGCCCGCCTGTTAGAAACGGGGACTAAGTTGCAC GGAGGTATTGGAAGTTCGTTCTCACAGCAGCGTGAGTGGAAAAACAACAT GTGAGAATACCAATGCTTGTGCGTCCAATCAGGGGGAGGGGGTATGTGGT TTGCATATTGACAGAATAATGTTCCCGAGATTCAGCTCATGCGTAGACAA TAACGAGAGACCCATTCCGGACCAATCCCGATTGCGAAGGGGACGACGGG ATTGTCTTGTACGTGCTACCGTTGTTCCCTCGTGTGAGCTTTGATATTTA GTGCCAGAGGAACAGCGGTAGCCGTTAGCCACTCTCTTTTCAGCCTAGCA ATAGAATCAACAGCAGGGTCGCGTTTTCGCTTGACTGCATGCCTTCACAC GCGATAGGCTCGTGTTTGTTTTGCGAGTTCCCTTGTCCTCTTTGGGAGAC GAAAGTAGACTACCACGTTGAGATAAACAAGTTCATAAGAGACTTGAAAA TGCTCGCCGGTTTGCCCCCTCGGACAGTAAGTACTGTAGAATCGTGTTGT TCAAGGAGACTACGGGGGCGGGTGGGGGCATAGTTGTCAACGCCACTGGA ACATGGCCACCGAGGTCTGTAACTACCTACATTCGTGTTTGTGTTCGTGC TACAGTATGTGGTCCGTGTTATGTATCCGTACGGAATCCCCAGTCTTGTA GGCGGTAGACTGCAATGGCTCCCGGGCAGAAGAAGATGGTGCTGCATGCG TGATAATGTGCAGGTGTTTCAGGCGTTTTGAGCTCGCTCGAAGCGCGATA GTCTAATCAGGTGTTCTGGGTTTGTTGGAGCACTCCAGGAAGGTAGACGT ACGGGGATCAGGTCCCGGGTTTCCGGCAGACCGTCGTTGCGTAAGCGGAC TGGTACGTCGGGAGGAGTCTTCGCGGTGTCCACGTGTTGCATTGGTTGGA ACCGAAGCTGCTACGAAGCAGATTGTGGATGGAGTGCAATACTACCTTCT ACCCATGGCACGTACTCATTTCGTCGCTTTTGACGCTTGTGGGGTAAAAA TTTCTTTTGTATC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15:126256..134918+

>mRNA_E-siliculosus-1a_F_contig15.2907.1 ID=mRNA_E-siliculosus-1a_F_contig15.2907.1|Name=mRNA_E-siliculosus-1a_F_contig15.2907.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15:126256..134918+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGCGAGGACGAAGCGTGTTCCCATCGCCATGTCGGCTCTCGTGTC
CATGGGTCAGGTGTCCGGCCAGTGTATCAGTGCGCCCTACGTGGCTTGGT
ACCCGTGTGGAACGCCTTCCATTTTAGTTCAATCAACGTGTGATCGAGCT
CGTCTATTTTTCCACGTCCATCGGGAGACCGGCATGTTCGCGAGGACGAA
GCGTGTTCCCATCGCCATGTCGGCTCTCGTGTCCATGGGTCAGGTGTCCG
GCCAGTGTATCAGTGCGCCCTACGTGGCTTGGTACCCGTGTGGAACGCCT
TCCATTTTAGTTCAATCAACGTGTGATCGAGCTCGTCTATTTTTCCACGT
CCATCGGGAGACCGGCTGCGTGTCATCGAACCCGATCGTGACAGTCGATT
TCACGGGGCCTATTGCGAGCTGGGGATATACCACGGGCAGCGACGGCGAA
CTAGATGCGGACCTATCCGATGATCAATTGAGCCTCACCTTCGACATTGG
CGAGGCTGATCTCGATCCTATTTTCGTCGAATCAGAGGATTACTATTACT
GGCATTTTGCCCTTTATCTTGACAACTGTGACACCTCCTACACCTGGAGC
GACAACTTCGTCCAGCTGTCCTATGTCGACGACGAGCAGAACACCATCGA
CCTGTCCGTCTTCGAAGATCCTGACATCGACGAACCGGACACCGGGATAT
GTCTGCGTGTCATCGAACCCGATCGTGACAGTCGATTTCACGGGGCCTAT
TGCGAGCTGGGGATATACCACGGGCAGCGACGGCGAACTAGATGCGGACC
TATCCGATGATCAATTGAGCCTCACCTTCGACATTGGCGAGGCTGATCTC
GATCCTATTTTCGTCGAATCAGAGGATTACTATTACTGGCATTTTGCCCT
TTATCTTGACAACTGTGACACCTCCTACACCTGGAGCGACAACTTCGTCC
AGCTGTCCTATGTCGACGACGAGCAGAACACCATCGACCTGTCCGTCTTC
GAAGATCCTGACATCGACGAACCGGACACCGGGATATGTCCCACTCCTAG
CCCGGTCACGCCATCGTCGTCCATGCCTGCTCCCACTCCTACCCCGACCA
TGCGTGCCACTCCTAGCCCGGTCACGCCATCGTCGTCCATGCCTGCTCCC
ACTCCTACCCCGACCATGCGTGGCACGCTTGATACCTACCCTCCCACTCC
CAGCCCATTGTGGAGCCCACAACCTCCCACGCCCCACCCCACTCTTAGAG
ATGAAGCGCCTCCTACTCCCAGCCCGTCTACCAGCCCTGTGGTAGAAGGA
TCCTCTGTTGCACTTGGGTGCTACGCGGACGACCGCGAAGCCCGTATCAT
GGACGACCTCGCTCTTTCCGACTACTCGATGACAACCGAGGCACGCTTGA
TACCTACCCTCCCACTCCCAGCCCATTGTGGAGCCCACAACCTCCCACGC
CCCACCCCACTCTTAGAGATGAAGCGCCTCCTACTCCCAGCCCGTCTACC
AGCCCTGTGGTAGAAGGATCCTCTGTTGCACTTGGGTGCTACGCGGACGA
CCGCGAAGCCCGTATCATGGACGACCTCGCTCTTTCCGACTACTCGATGA
CAACCGAGCTGTGCGAGCAAACATGCCTCGGAAATACCTACTTCGCCACT
CAGTACGGGCGGGAGCTGTGCGAGCAAACATGCCTCGGAAATACCTACTT
CGCCACTCAGTACGGGCGGGAGTGCTGGTGTGGTTCGGCTGGTGCGGATT
ACGCTTCGCACGGGGAGTCCACCGACTGCACCTACACCTGCGCAGGAGAC
GCTGACCAATCGTGCGGCGGATTCGACGCCGCCAACGTCTACCTTTACAC
GGGCGAGAGCACTCCCAGCCCCACTCCTAGCCCCACGGCAGACGAATCTG
GCCCTCTTGCACTTGGGTGCTACGAGGACGACCGCGAAAGCCGTACCATG
GACGATCTCGCTCTTTCCGACAACTCCATGACAACCGAGTGCTGGTGTGG
TTCGGCTGGTGCGGATTACGCTTCGCACGGGGAGTCCACCGACTGCACCT
ACACCTGCGCAGGAGACGCTGACCAATCGTGCGGCGGATTCGACGCCGCC
AACGTCTACCTTTACACGGGCGAGAGCACTCCCAGCCCCACTCCTAGCCC
CACGGCAGACGAATCTGGCCCTCTTGCACTTGGGTGCTACGAGGACGACC
GCGAAAGCCGTACCATGGACGATCTCGCTCTTTCCGACAACTCCATGACA
ACCGAGCTGTGCGAGCAAACATGCCTCGGAAACACCTACTTCGCCACTCA
GTACGGGCGGGAGCTGTGCGAGCAAACATGCCTCGGAAACACCTACTTCG
CCACTCAGTACGGGCGGGAGTGCTGGTGTGGTTCGGCTGGTGCGGAATAC
ACTTTACACGGGGAGTCCACCGACTGCACCTACGCCTGCGCAGGGAACGC
TGACCAAACGTGCGGCGGGTTCGACGCCGCCAACGTCTACCTTTACACGG
GTGACGACGCGCCTACGACATCAACGTTCGTGGGATGCTACCAAGACGAG
TCGGACGCACGCGTCATGGAACTCGCGCTGACGGACAGTTCTTCCATGAC
CAAGGAGTGCTGGTGTGGTTCGGCTGGTGCGGAATACACTTTACACGGGG
AGTCCACCGACTGCACCTACGCCTGCGCAGGGAACGCTGACCAAACGTGC
GGCGGGTTCGACGCCGCCAACGTCTACCTTTACACGGGTGACGACGCGCC
TACGACATCAACGTTCGTGGGATGCTACCAAGACGAGTCGGACGCACGCG
TCATGGAACTCGCGCTGACGGACAGTTCTTCCATGACCAAGGAGATGTGC
GAGGCCGAGTGCACCGGAAACACGTACTTCGGCATGCAGTACGGGAGGGA
GATGTGCGAGGCCGAGTGCACCGGAAACACGTACTTCGGCATGCAGTACG
GGAGGGAGTGCTTCTGCGGTGGGAGTTCAAACGACCTCTTGCAGCACGGG
GAGTCGAGTGCCTGCGACTACGAGTGCCCGGGGGACTCAGATCAATTGTG
CGGAGGATTCTACGCCATGAGCGTGTACTCCTACTAGTGCTTCTGCGGTG
GGAGTTCAAACGACCTCTTGCAGCACGGGGAGTCGAGTGCCTGCGACTAC
GAGTGCCCGGGGGACTCAGATCAATTGTGCGGAGGATTCTACGCCATGAG
CGTGTACTCCTACTAG
back to top