mRNA_E-siliculosus-1a_F_contig15.2903.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15.2903.1
Unique NamemRNA_E-siliculosus-1a_F_contig15.2903.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15.2903.1 vs. uniprot
Match: A0A6H5JS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS15_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.660e-30
Identity = 89/262 (33.97%), Postives = 130/262 (49.62%), Query Frame = 1 
Query:  226 NSATTMQKEVRRQKWALFLFGNLLTIGSVIYELESLDLCFVQGETYRNSIGFAEAGDTSDVERFVVGALWLGVVYEML----SALVLSTIYSSPLDAKSAHKVPPNDNRGHCARLFL-RFLTPCTWGVLLILVGMASFRFATFRSCDT-NGGTWLTDYLVVSGIGMLLFGFVFLIL-FMAIFLPIF--------------ACCCECVRILSNKLLKTFPYIELFWQLQNVVFGYRSGAFNVYVAVALGIVEVIGAVFSERGS 948
             + T +  E R  KWA+F+ GNL+++  V  E+  L +CF +     +     E   ++       GAL L +V  +L    SA++LS +Y SPLD KSAHK+PP D R HC   FL  F+ P  WG++    G+AS  +     C   NGG  +  YL +SGI M++FG   L L F+A+ L                  CC      +  +L+   P  +L WQ+Q+V+  YR+GA N+  A  L    V+G V +  GS
Sbjct:   62 EAVTEVAHESRSWKWAMFVLGNLISLAVVASEIGELSVCFEENPEEDDDDTLEENASSA------FGALMLNLVLSLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMR-HCGGTFLVHFVAPFFWGLVYFTGGIASSMYGDNAPCGGGNGGDGMESYLKISGILMIVFGTGMLALSFVALMLACXXXXXXXXXXXXXXXGCCSRARDAVHKRLMSKSPIFDLAWQVQSVLLSYRAGAVNLASAFLLVSSGVVGEVLAAFGS 316
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BLAST of mRNA_E-siliculosus-1a_F_contig15.2903.1 vs. uniprot
Match: A0A6H5JU44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU44_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.930e-13
Identity = 70/282 (24.82%), Postives = 117/282 (41.49%), Query Frame = 1 
Query:  220 PGNSATTMQKEVRRQK-WALFLFGNLLTIGSVIYELESLDLCFVQGETYRNSIGFAEAGDTSDVERFVVGALWLGVVYEMLSALVLSTIYSSPLDAKSAHKVPPNDNRGHCARLFLRFLTPCT-WGVLLILVGMASFRFATFRSC-----DTNGGTWLTDYLVVSGIGMLLFGFVFLILFMAIFLPIFACC---CECVR---------------------------ILSNKL--LKTFPYIELFWQLQNVVFGYRSGAFNVYVAVALGIVEVIGAVFSERGS 948
            PG  A   + E  + K W  F+ G L+ +  V Y+L S++ C     +   S G+     TS V+ F +  + L +  E+LS+L+LS  Y+SPLD K+ H +P  + +      +L    PC  +G++   V    F  + +  C     D+  G     ++V  G+G+      FL         +  CC   C C+                            I S+K+  ++    +EL WQ   +++ + +G     VAV L +V V+G      GS
Sbjct:   22 PGAEALVPESEASKNKRWIQFVTGLLIQVAIVGYDLYSINECDWSTYSKYPSTGYYSPTSTSTVKGFKIAVMVLSLGEEVLSSLILSCKYNSPLDLKTLHNLP-TEMKSSRTEFYLIVGMPCLFYGIISSFVAQVCFYLSKYHGCEGPRSDSLNGFLFFSFIVFFGLGLGFCNMFFLA-------TVSYCCGSLCGCMEDCWDSCCGRRGSRDAARQENARSLGEHIESSKVQYIRVATMVELSWQFMYLLWAFHAGTVTGEVAVTLSVVTVVGICLVAVGS 295
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15.2903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS15_9PHAE4.660e-3033.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU44_9PHAE3.930e-1324.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15contigE-siliculosus-1a_F_contig15:81357..83714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size798
Model size1290
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15.2903.1prot_E-siliculosus-1a_F_contig15.2903.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15 81648..82445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928010.4050555-UTR-E-siliculosus-1a_F_contig15:81356..816471622928010.4050555-UTR-E-siliculosus-1a_F_contig15:81356..81647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 81357..81647 -
1696318771.063995-UTR-E-siliculosus-1a_F_contig15:81356..816471696318771.063995-UTR-E-siliculosus-1a_F_contig15:81356..81647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 81357..81647 -
1622928010.4317744-UTR-E-siliculosus-1a_F_contig15:82445..824541622928010.4317744-UTR-E-siliculosus-1a_F_contig15:82445..82454Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 82446..82454 -
1696318771.0814636-UTR-E-siliculosus-1a_F_contig15:82445..824541696318771.0814636-UTR-E-siliculosus-1a_F_contig15:82445..82454Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 82446..82454 -
1622928010.4415743-UTR-E-siliculosus-1a_F_contig15:83522..837141622928010.4415743-UTR-E-siliculosus-1a_F_contig15:83522..83714Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 83523..83714 -
1696318771.0949683-UTR-E-siliculosus-1a_F_contig15:83522..837141696318771.0949683-UTR-E-siliculosus-1a_F_contig15:83522..83714Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 83523..83714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928010.419232-CDS-E-siliculosus-1a_F_contig15:81647..824451622928010.419232-CDS-E-siliculosus-1a_F_contig15:81647..82445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 81648..82445 -
1696318771.0724487-CDS-E-siliculosus-1a_F_contig15:81647..824451696318771.0724487-CDS-E-siliculosus-1a_F_contig15:81647..82445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 81648..82445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15.2903.1

>prot_E-siliculosus-1a_F_contig15.2903.1 ID=prot_E-siliculosus-1a_F_contig15.2903.1|Name=mRNA_E-siliculosus-1a_F_contig15.2903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=266bp
MATTTGPGNSATTMQKEVRRQKWALFLFGNLLTIGSVIYELESLDLCFVQ
GETYRNSIGFAEAGDTSDVERFVVGALWLGVVYEMLSALVLSTIYSSPLD
AKSAHKVPPNDNRGHCARLFLRFLTPCTWGVLLILVGMASFRFATFRSCD
TNGGTWLTDYLVVSGIGMLLFGFVFLILFMAIFLPIFACCCECVRILSNK
LLKTFPYIELFWQLQNVVFGYRSGAFNVYVAVALGIVEVIGAVFSERGSC
LLPPPARVIAQAVEV*
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mRNA from alignment at E-siliculosus-1a_F_contig15:81357..83714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15.2903.1 ID=mRNA_E-siliculosus-1a_F_contig15.2903.1|Name=mRNA_E-siliculosus-1a_F_contig15.2903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2358bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15:81357..83714- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACATACTTTGTTTTGGATCACCCGGCCTGGGATCTAGGTGGAGTGTGTC
TTGCGAAGAAGAAGGACTTGAGAGGTGAAGTGGGAGCGACCGGTGTGGCA
GGCAGCGGCTTCTCATCGGCTGCGACAGTTGCTCCGACATCTATCTCCAA
CAACGGAGACTTCCCGCTCGTGGAATTTGGTGGTGTGTATAGGTGAGAGT
GTCATGCGCATCCCGGACGTATCTCATCTCATGCATGCGCCTTTGCGTTG
TACATATGAGTTGAGGTAGCCGCAGCGGTGGACATCATGGATAGGTGGAT
GTCTTCCATGTAGATACCTCCTTCTGTTGCCGTCCTTCACCGCGCGATTG
TACGACGAATATATGCATATCGACATGGTTTTTGAGTTCTTGCGGAAAGA
ACGGTGGTGCAGCAGTTTGCGTGCACGATACACTATTTGCCCACCATACT
TTGAACGACACGCCTCGCTCTCGCACGATGCCATCACGTTGTTACGCCTG
CCACGTAGCATACAACAAGGCAAGACGATGTTCTCTTCACCAATCAGTTT
GCACTCTTTCGTACAACGGCATGGTTCATAATCTCTCAGTCAGGCACGTA
TCAACCGACGCGCCAGCACTGCGTGACCGAGGGGTCATCATCAGAAAAAG
CAAGTAACTAAAATTACACTGTACTTGATGCAATTTTGTCGATTTCAAAA
TAAACGTGGGCAGCAATGGTACTGTAGATCAGATACATGTAGATTCAATA
GTGATCATCCGGCCAAGCTGTCAAACGATACTGCGCCGTGTTCCCTGTGA
AGGCCAGATATATTTTTCAACACACGACATGACGGAGGGCATCTCCTCGA
TAATTTTGTCCGTTGGACCTTGGTTGACCCAGTAGAGACCTACACGTAAT
GTAGACCAAAATGCATCCACAGCGTACAGATGCTTTCGCTCGTAACACCA
GCTGTTTTCACTGTACAATTCAGTGTATTGTAGTATATAGGCTATTATGT
AGACGCTTGAGCAAACTCATAAGATGCCCAGTTTCCAGCCGGTTTCCCTC
CACTCACTATAGACTTCAGCACTCCCTTTTTCAACTGTAATAATATCTCG
AACGGCTCCGGCTGTGAGGTTTGAATACTTTATTTCCTGTGAGGTTTGGC
GGAGAGCGACATATCGAATCACACAATCGAAGGTAGACAGCAGTCGAAGA
AGGCACCTAGCTAGTCAATTCGTGTATAACGCAGGGATTCGACCATATAT
TATGCTACAGGTTTCAGCCATGGCGACAACCACAGGGCCGGGCAATTCTG
CGACGACAATGCAAAAGGAAGTACGGAGACAAAAGTGGGCCCTCTTCCTC
TTTGGCAATTTACTGACGATTGGCAGCGTCATCTACGAGTTAGAGTCGCT
CGACCTGTGTTTCGTACAGGGCGAAACCTACCGCAATTCCATCGGTTTCG
CGGAGGCTGGCGACACGAGTGATGTTGAACGCTTCGTGGTTGGAGCCCTG
TGGTTGGGAGTCGTGTACGAGATGTTATCCGCTCTTGTGCTGTCCACAAT
ATACTCGTCTCCGCTTGACGCAAAGTCCGCTCACAAAGTCCCTCCGAACG
ATAACCGTGGTCATTGCGCAAGGTTATTTTTACGGTTTCTTACGCCGTGT
ACATGGGGGGTTCTGCTCATCTTGGTCGGGATGGCTAGCTTCAGATTTGC
TACTTTTCGGTCTTGCGACACCAATGGTGGAACTTGGTTGACAGACTATC
TTGTCGTGTCTGGAATTGGCATGTTATTGTTTGGTTTTGTTTTCCTCATT
TTGTTCATGGCAATTTTCCTTCCCATCTTCGCCTGTTGCTGTGAGTGTGT
CAGGATCTTGAGCAACAAGCTGTTGAAAACGTTTCCCTACATCGAGTTAT
TTTGGCAGTTGCAAAATGTCGTTTTTGGCTATCGCTCAGGCGCTTTCAAT
GTGTATGTTGCGGTTGCACTTGGCATCGTGGAGGTGATCGGAGCGGTGTT
CAGTGAGCGCGGGAGTTGCCTGTTGCCGCCTCCTGCGAGGGTTATCGCTC
AAGCAGTAGAGGTATGATCGCCCGCCAATGACACGAAAGAAATAGGATAT
TGTTTTGTTCCTGGACAAGAATGGTACGGGCGTAGTAGCCGGTTGCAGTC
AGTGATATGGTGCTCATGGTCAGACGTATCACCGGGCGAGACATGGTATG
TAGTGTCGGGCCGCCAGCCCCTTGGCAGGAGTAAGGGTGTCTCTCGGCAT
CCACCTCATTGGGTAGCATGAGGAGAGATTCTACATCATGATTCGTAGGA
AGTGGTATTTTTTTGGGAAAAAAAACGAAACGCCGTACATGAAAGATGTC
AGGGAAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15:81357..83714-

>mRNA_E-siliculosus-1a_F_contig15.2903.1 ID=mRNA_E-siliculosus-1a_F_contig15.2903.1|Name=mRNA_E-siliculosus-1a_F_contig15.2903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1596bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15:81357..83714- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGACAACCACAGGGCCGGGCAATTCTGCGACGACAATGCAAAAGGA
AGTACGGAGACAAAAGTGGGCCCTCTTCCTCTTTGGCAATTTACTGACGA
TTGGCAGCGTCATCTACGAGTTAGAGTCGCTCGACCTGTGTTTCGTACAG
GGCGAAACCTACCGCAATTCCATCGGTTTCGCGGAGGCTGGCGACACGAG
TGATGTTGAACGCTTCGTGGTTGGAGCCCTGTGGTTGGGAGTCGTGTACG
AGATGTTATCCGCTCTTGTGCTGTCCACAATATACTCGTCTCCGCTTGAC
GCAAAGTCCGCTCACAAAGTCCCTCCGAACGATAACCGTGGTCATTGCGC
AAGGTTATTTTTACGGTTTCTTACGCCGTGTACATGGGGGGTTCTGCTCA
TCTTGGTCGGGATGGCTAGCTTCAGATTTGCTACTTTTCGGTCTTGCGAC
ACCAATGGTGGAACTTGGTTGACAGACTATCTTGTCGTGTCTGGAATTGG
CATGTTATTGTTTGGTTTTGTTTTCCTCATTTTGTTCATGGCAATTTTCC
TTCCCATCTTCGCCTGTTGCTGTGAGTGTGTCAGGATCTTGAGCAACAAG
CTGTTGAAAACGTTTCCCTACATCGAGTTATTTTGGCAGTTGCAAAATGT
CGTTTTTGGCTATCGCTCAGGCGCTTTCAATGTGTATGTTGCGGTTGCAC
TTGGCATCGTGGAGGTGATCGGAGCGGTGTTCAGTGAGCGCGGGAGTTGC
CTGTTGCCGCCTCCTGCGAGGGTTATCGCTCAAGCAGTAGAGGTATGAAT
GGCGACAACCACAGGGCCGGGCAATTCTGCGACGACAATGCAAAAGGAAG
TACGGAGACAAAAGTGGGCCCTCTTCCTCTTTGGCAATTTACTGACGATT
GGCAGCGTCATCTACGAGTTAGAGTCGCTCGACCTGTGTTTCGTACAGGG
CGAAACCTACCGCAATTCCATCGGTTTCGCGGAGGCTGGCGACACGAGTG
ATGTTGAACGCTTCGTGGTTGGAGCCCTGTGGTTGGGAGTCGTGTACGAG
ATGTTATCCGCTCTTGTGCTGTCCACAATATACTCGTCTCCGCTTGACGC
AAAGTCCGCTCACAAAGTCCCTCCGAACGATAACCGTGGTCATTGCGCAA
GGTTATTTTTACGGTTTCTTACGCCGTGTACATGGGGGGTTCTGCTCATC
TTGGTCGGGATGGCTAGCTTCAGATTTGCTACTTTTCGGTCTTGCGACAC
CAATGGTGGAACTTGGTTGACAGACTATCTTGTCGTGTCTGGAATTGGCA
TGTTATTGTTTGGTTTTGTTTTCCTCATTTTGTTCATGGCAATTTTCCTT
CCCATCTTCGCCTGTTGCTGTGAGTGTGTCAGGATCTTGAGCAACAAGCT
GTTGAAAACGTTTCCCTACATCGAGTTATTTTGGCAGTTGCAAAATGTCG
TTTTTGGCTATCGCTCAGGCGCTTTCAATGTGTATGTTGCGGTTGCACTT
GGCATCGTGGAGGTGATCGGAGCGGTGTTCAGTGAGCGCGGGAGTTGCCT
GTTGCCGCCTCCTGCGAGGGTTATCGCTCAAGCAGTAGAGGTATGA
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