mRNA_E-siliculosus-1a_F_contig15.2898.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15.2898.1
Unique NamemRNA_E-siliculosus-1a_F_contig15.2898.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15.2898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15contigE-siliculosus-1a_F_contig15:14360..14722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size309
Model size363
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15.2898.1prot_E-siliculosus-1a_F_contig15.2898.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15 14377..14685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.8756402-UTR-E-siliculosus-1a_F_contig15:14359..143761622928008.8756402-UTR-E-siliculosus-1a_F_contig15:14359..14376Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 14360..14376 +
1696318770.5514905-UTR-E-siliculosus-1a_F_contig15:14359..143761696318770.5514905-UTR-E-siliculosus-1a_F_contig15:14359..14376Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 14360..14376 +
1622928008.9139934-UTR-E-siliculosus-1a_F_contig15:14685..147221622928008.9139934-UTR-E-siliculosus-1a_F_contig15:14685..14722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 14686..14722 +
1696318770.5693321-UTR-E-siliculosus-1a_F_contig15:14685..147221696318770.5693321-UTR-E-siliculosus-1a_F_contig15:14685..14722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15 14686..14722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.8957548-CDS-E-siliculosus-1a_F_contig15:14376..146851622928008.8957548-CDS-E-siliculosus-1a_F_contig15:14376..14685Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 14377..14685 +
1696318770.5601385-CDS-E-siliculosus-1a_F_contig15:14376..146851696318770.5601385-CDS-E-siliculosus-1a_F_contig15:14376..14685Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15 14377..14685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15.2898.1

>prot_E-siliculosus-1a_F_contig15.2898.1 ID=prot_E-siliculosus-1a_F_contig15.2898.1|Name=mRNA_E-siliculosus-1a_F_contig15.2898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=103bp
MVASRARERSIRRHHNYSHNSGAQLPTSSNQCNCRLRRQKNSTTSFPPRS
KTEQSQPFLETTRNQHGKVTTRCWAKSCDTTAQIVRHPPRLTPALPQRHR
HC*
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mRNA from alignment at E-siliculosus-1a_F_contig15:14360..14722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15.2898.1 ID=mRNA_E-siliculosus-1a_F_contig15.2898.1|Name=mRNA_E-siliculosus-1a_F_contig15.2898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15:14360..14722+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGACGAATGCGTAAACATGGTTGCCTCTCGCGCGCGCGAACGTTCTATA
CGTAGACACCACAACTACTCCCATAATAGTGGGGCCCAACTCCCCACAAG
CTCCAACCAATGCAATTGTCGTCTGAGAAGACAGAAGAACTCCACAACAA
GCTTCCCCCCTCGTTCCAAAACTGAGCAATCACAACCCTTCCTAGAAACG
ACCCGGAACCAACACGGCAAGGTCACGACACGGTGTTGGGCTAAATCGTG
CGATACAACAGCGCAAATTGTGCGGCACCCTCCCCGTCTAACCCCTGCAC
TCCCTCAACGGCACCGGCACTGTTGATGTTTCTCCAACGCCCAACCCATT
CCGGATACCTCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15:14360..14722+

>mRNA_E-siliculosus-1a_F_contig15.2898.1 ID=mRNA_E-siliculosus-1a_F_contig15.2898.1|Name=mRNA_E-siliculosus-1a_F_contig15.2898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15:14360..14722+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTGCCTCTCGCGCGCGCGAACGTTCTATACGTAGACACCACAACTA
CTCCCATAATAGTGGGGCCCAACTCCCCACAAGCTCCAACCAATGCAATT
GTCGTCTGAGAAGACAGAAGAACTCCACAACAAGCTTCCCCCCTCGTTCC
AAAACTGAGCAATCACAACCCTTCCTAGAAACGACCCGGAACCAACACGG
CAAGGTCACGACACGGTGTTGGGCTAAATCGTGCGATACAACAGCGCAAA
TTGTGCGGCACCCTCCCCGTCTAACCCCTGCACTCCCTCAACGGCACCGG
CACTGTTGAATGGTTGCCTCTCGCGCGCGCGAACGTTCTATACGTAGACA
CCACAACTACTCCCATAATAGTGGGGCCCAACTCCCCACAAGCTCCAACC
AATGCAATTGTCGTCTGAGAAGACAGAAGAACTCCACAACAAGCTTCCCC
CCTCGTTCCAAAACTGAGCAATCACAACCCTTCCTAGAAACGACCCGGAA
CCAACACGGCAAGGTCACGACACGGTGTTGGGCTAAATCGTGCGATACAA
CAGCGCAAATTGTGCGGCACCCTCCCCGTCTAACCCCTGCACTCCCTCAA
CGGCACCGGCACTGTTGA
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