mRNA_E-siliculosus-1a_F_contig14999.2897.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A0D5LZR9_9GAMM (Histidine kinase n=6 Tax=Halomonas TaxID=2745 RepID=A0A0D5LZR9_9GAMM) HSP 1 Score: 412 bits (1058), Expect = 5.210e-141 Identity = 214/237 (90.30%), Postives = 221/237 (93.25%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTSTLPRAIYSSPFAEMDALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLSK 711
RYTE GRVLLGCRRR +GLEIMVGDTGPGIPEQQREAIFLEF RVNQP SA+SRGLGLGLAIVDRISSMLE PVSLASRPGVGALFSITVPYAA +TS LP Y+SP E+D LQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSAL+AASDGERP VLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLG+LL K
Sbjct: 227 RYTEHGRVLLGCRRRPHGLEIMVGDTGPGIPEQQREAIFLEFRRVNQPHSANSRGLGLGLAIVDRISSMLEQPVSLASRPGVGALFSITVPYAAVATSALPMR-YASPSGEIDDPLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALEAASDGERPAVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGSLLHK 462
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A101D0Q8_9GAMM (Histidine kinase n=2 Tax=root TaxID=1 RepID=A0A101D0Q8_9GAMM) HSP 1 Score: 397 bits (1019), Expect = 4.580e-135 Identity = 204/238 (85.71%), Postives = 215/238 (90.34%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTST-LPRAIYSSPFAEMDALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLSK 711
RYTEQGRVLLGCRRR GLEIMVGDTGPGIPEQQREAIFLEF R NQPQ AHSRGLGLGLAIVDRIS+MLEHP+SL SRPGVGALFSITVPYAAA+ T +P Y+ E L GC+VWVIDDDLAIIEGMQALLSSWGCRVRAAATVSAL+AASDGE+P VLLVDYHLGEHRETGIDLAARLQRRYPGLA+VVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLL +LL+K
Sbjct: 227 RYTEQGRVLLGCRRRREGLEIMVGDTGPGIPEQQREAIFLEFRRANQPQGAHSRGLGLGLAIVDRISTMLEHPISLVSRPGVGALFSITVPYAAATAITSVPSTRYALLAEEAQDPLHGCVVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALEAASDGEQPAVLLVDYHLGEHRETGIDLAARLQRRYPGLASVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLSSLLNK 464
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A651D9T5_HALSX (Histidine kinase n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651D9T5_HALSX) HSP 1 Score: 385 bits (989), Expect = 1.960e-130 Identity = 201/239 (84.10%), Postives = 211/239 (88.28%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTSTLPRAIYSSPFA--EMDALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLSK 711
RYTEQGRVLLGCRRR +GLEIMVGDTGPGIPEQQREAIFLEF R N PQSAHSRGLGLGLAIVDRIS+MLE P+SLASRPG GALFSITVPYAA S++ SP E D L GC+VWVIDDDLAIIEGMQALL SWGCRVRAAATVSAL+AASDGE+P VLLVDYHLG+HRETGI LAARLQRRYPGL +VVITANHEAEIKR TREAGMHCLLKPLKPLRLRMLLGTLLSK
Sbjct: 234 RYTEQGRVLLGCRRRRDGLEIMVGDTGPGIPEQQREAIFLEFRRANHPQSAHSRGLGLGLAIVDRISTMLEQPISLASRPGSGALFSITVPYAAVSSTPSSSGSRYSPLPGDEYDPL-HGCVVWVIDDDLAIIEGMQALLGSWGCRVRAAATVSALEAASDGEQPAVLLVDYHLGDHRETGIALAARLQRRYPGLVSVVITANHEAEIKRVTREAGMHCLLKPLKPLRLRMLLGTLLSK 471
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A365TQS2_9GAMM (Histidine kinase n=2 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A365TQS2_9GAMM) HSP 1 Score: 381 bits (978), Expect = 2.120e-129 Identity = 200/239 (83.68%), Postives = 212/239 (88.70%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTST-LPRAIYSSPFAEMDALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLSKS 714
RYTE GRVLLGCRRR +GLEI+VGDTGPGIPEQQREAIFLEF R NQ SAHSRGLGLGLAIVDRIS+MLE PVSL SRPG GALFSITVPYA A+ T LP+ Y S E+D L GC+VWVIDDDLAI+EGMQALL SWGCRVRAAATVSAL+AASDGERP VLLVDYHLGEHRETGI LA+RLQRRYPGLA+VVITANHEAEIKRATREAGMH LLKPLKPLRLRMLLG LL+KS
Sbjct: 189 RYTEHGRVLLGCRRRRDGLEIVVGDTGPGIPEQQREAIFLEFRRANQVNSAHSRGLGLGLAIVDRISTMLEQPVSLTSRPGEGALFSITVPYAEAALPTALPKKSYPSSPEEIDPL-HGCVVWVIDDDLAILEGMQALLGSWGCRVRAAATVSALEAASDGERPEVLLVDYHLGEHRETGIGLASRLQRRYPGLASVVITANHEAEIKRATREAGMHYLLKPLKPLRLRMLLGILLNKS 426
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: L9U9Q0_9GAMM (Histidine kinase n=23 Tax=Halomonas TaxID=2745 RepID=L9U9Q0_9GAMM) HSP 1 Score: 379 bits (974), Expect = 2.420e-128 Identity = 193/238 (81.09%), Postives = 209/238 (87.82%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTSTLPRAIYSSPFAEMDALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLSKS 714
RYTEQGRVLLGCRRR +GLEIMVGDTGPGIPEQQREAIFLEF R NQP S+HSRGLGLGLAIVDRIS+ML P+SLAS PG GALFSITVPYA A+ + Y+ + L GC++WVIDDDLAIIEGMQALL SWGCRVRAAATVSAL+A SDGERP VLLVDYHLG+HRETGI+LAARLQRRYPGLAAVVITANHEAEIKRATREAGM+CLLKPLKPLRLRMLL TLL+K+
Sbjct: 221 RYTEQGRVLLGCRRRRDGLEIMVGDTGPGIPEQQREAIFLEFRRANQPNSSHSRGLGLGLAIVDRISAMLGQPISLASSPGAGALFSITVPYATAAPPAVASTHYTPLPDVAEDPLSGCVIWVIDDDLAIIEGMQALLGSWGCRVRAAATVSALEAVSDGERPAVLLVDYHLGDHRETGIELAARLQRRYPGLAAVVITANHEAEIKRATREAGMYCLLKPLKPLRLRMLLATLLNKA 458
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A511ULB2_9GAMM (Histidine kinase n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511ULB2_9GAMM) HSP 1 Score: 372 bits (954), Expect = 4.910e-125 Identity = 191/242 (78.93%), Postives = 206/242 (85.12%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTSTLPRAIYSSPFAEMDALLQG-----------CIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLL 693
RYTEQGRVLLGCRRR +GLEIMVGDTGPGIPEQQREAIFLEF R QP SAHSRGLGLGLAIVDRIS+MLE PVSL SRPGVGALFSITVPYA A+ T+ + P + LL G C++WVIDDDLAIIEGMQALL SWGCRVRAA TVSAL+AASDGE+P +LLVDYHLGEHRETGI+LA+RLQRRYPGL+A+VITANHEAEIKRATREAGMHCLLKPLKPLRLRMLL
Sbjct: 228 RYTEQGRVLLGCRRRRDGLEIMVGDTGPGIPEQQREAIFLEFRRATQPNSAHSRGLGLGLAIVDRISTMLEQPVSLTSRPGVGALFSITVPYATAAIPTVSNLRTALPSDATEDLLNGENPLKEDPLSGCVIWVIDDDLAIIEGMQALLGSWGCRVRAAGTVSALEAASDGEQPAILLVDYHLGEHRETGIELASRLQRRYPGLSAIVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLL 469
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A455V9E6_9GAMM (Histidine kinase n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455V9E6_9GAMM) HSP 1 Score: 360 bits (924), Expect = 1.200e-123 Identity = 188/237 (79.32%), Postives = 204/237 (86.08%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTSTLPRAIYSSPFAEM-DALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLS 708
RYTE G +LLGCRRR +GLEIMVGDTGPGIPE QR+AIFLEF R +QPQ+ HSRGLGLGLAIVDRIS+ML+HPV+LASR G G+LFSI VPYAA S L A P A+ D LQGC+VWV+DDD AI EGMQALL SWGCRVRAAATVSAL+AASDGERP VLLVDYHLGEHRE GIDLAARL+RRYPGLA VVITANHEA +KRATREAGMHCLLKPLKPLRL+MLLGTLL
Sbjct: 23 RYTEHGHLLLGCRRRADGLEIMVGDTGPGIPEPQRKAIFLEFRRASQPQANHSRGLGLGLAIVDRISTMLDHPVTLASRLGHGSLFSILVPYAA-SCGALEGASSPVPSAQWGDDPLQGCVVWVVDDDPAITEGMQALLGSWGCRVRAAATVSALEAASDGERPAVLLVDYHLGEHRENGIDLAARLRRRYPGLATVVITANHEASLKRATREAGMHCLLKPLKPLRLKMLLGTLLE 258
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A0D7UZ95_9GAMM (Histidine kinase n=17 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D7UZ95_9GAMM) HSP 1 Score: 360 bits (924), Expect = 9.110e-121 Identity = 188/237 (79.32%), Postives = 204/237 (86.08%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTSTLPRAIYSSPFAEM-DALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLS 708
RYTE G +LLGCRRR +GLEIMVGDTGPGIPE QR+AIFLEF R +QPQ+ HSRGLGLGLAIVDRIS+ML+HPV+LASR G G+LFSI VPYAA S L A P A+ D LQGC+VWV+DDD AI EGMQALL SWGCRVRAAATVSAL+AASDGERP VLLVDYHLGEHRE GIDLAARL+RRYPGLA VVITANHEA +KRATREAGMHCLLKPLKPLRL+MLLGTLL
Sbjct: 221 RYTEHGHLLLGCRRRADGLEIMVGDTGPGIPEPQRKAIFLEFRRASQPQANHSRGLGLGLAIVDRISTMLDHPVTLASRLGHGSLFSILVPYAA-SCGALEGASSPVPSAQWGDDPLQGCVVWVVDDDPAITEGMQALLGSWGCRVRAAATVSALEAASDGERPAVLLVDYHLGEHRENGIDLAARLRRRYPGLATVVITANHEASLKRATREAGMHCLLKPLKPLRLKMLLGTLLE 456
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A060B8R5_9GAMM (Histidine kinase n=16 Tax=Halomonas TaxID=2745 RepID=A0A060B8R5_9GAMM) HSP 1 Score: 355 bits (912), Expect = 8.710e-119 Identity = 185/249 (74.30%), Postives = 205/249 (82.33%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAAS-----------TSTLPRAIYSSPFAEMDALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLSKS 714
RYTE G +LLGCRRR NGLEIMVGDTGPGIPE QR+AIFLEF R NQ QS HSRGLGLGLAIVDRIS+MLEHPVSL S+ G G+LFS+ VP++ + + P+A+ S + D L QGC++WVIDDD AIIEGMQALL SWGCRVRAAATVSAL+AASDGERP VLLVDYHLG+HRE GIDLAARL+RRYPGLA VVITANHEA +KRATREAGMHCLLKPLKPLRL+MLLGTLL S
Sbjct: 222 RYTEHGHLLLGCRRRANGLEIMVGDTGPGIPEPQRKAIFLEFRRANQSQSGHSRGLGLGLAIVDRISTMLEHPVSLTSQLGRGSLFSVLVPFSVPAXXXXXXXXXXPVAYAPKALPGSDRWQHDPL-QGCVIWVIDDDPAIIEGMQALLGSWGCRVRAAATVSALEAASDGERPAVLLVDYHLGDHRENGIDLAARLRRRYPGLATVVITANHEAALKRATREAGMHCLLKPLKPLRLKMLLGTLLENS 469
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Match: A0A2A4HHA7_9GAMM (Histidine kinase n=1 Tax=Halomonas nigrificans TaxID=2042704 RepID=A0A2A4HHA7_9GAMM) HSP 1 Score: 352 bits (902), Expect = 2.210e-117 Identity = 183/240 (76.25%), Postives = 201/240 (83.75%), Query Frame = 1
Query: 1 RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSAHSRGLGLGLAIVDRISSMLEHPVSLASRPGVGALFSITVPYAAASTST----LPRAIYSSPFAEMDALLQGCIVWVIDDDLAIIEGMQALLSSWGCRVRAAATVSALDAASDGERPTVLLVDYHLGEHRETGIDLAARLQRRYPGLAAVVITANHEAEIKRATREAGMHCLLKPLKPLRLRMLLGTLLS 708
RYTEQG +LLGCRRR GLEI+VGDTGPGIPE QR+AIFLEF R +QP + HSRGLGLGLAIVDRIS+ML+HP++L S G G+LFSI VPYA + T + A+ S + E D LQGC+VWVIDDD AIIEGMQALL SWGCRVRAAATVSAL+A SDGERP VLLVDYHLGEHRE GIDLA RL+RRYPGLA VVITANHEA +KRATREAGMHCLLKPLKPLRLRMLLGTLL
Sbjct: 222 RYTEQGHLLLGCRRRPQGLEIIVGDTGPGIPEPQRKAIFLEFRRASQPHNNHSRGLGLGLAIVDRISTMLDHPITLTSTLGRGSLFSILVPYAPSITGSGGDKKASAVARSAW-EYDDPLQGCVVWVIDDDPAIIEGMQALLGSWGCRVRAAATVSALEAVSDGERPAVLLVDYHLGEHRENGIDLATRLRRRYPGLATVVITANHEAAVKRATREAGMHCLLKPLKPLRLRMLLGTLLD 460 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14999.2897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14999.2897.1 >prot_E-siliculosus-1a_F_contig14999.2897.1 ID=prot_E-siliculosus-1a_F_contig14999.2897.1|Name=mRNA_E-siliculosus-1a_F_contig14999.2897.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=239bp RYTEQGRVLLGCRRRHNGLEIMVGDTGPGIPEQQREAIFLEFSRVNQPQSback to top mRNA from alignment at E-siliculosus-1a_F_contig14999:3..719+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14999.2897.1 ID=mRNA_E-siliculosus-1a_F_contig14999.2897.1|Name=mRNA_E-siliculosus-1a_F_contig14999.2897.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=717bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14999:3..719+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14999:3..719+ >mRNA_E-siliculosus-1a_F_contig14999.2897.1 ID=mRNA_E-siliculosus-1a_F_contig14999.2897.1|Name=mRNA_E-siliculosus-1a_F_contig14999.2897.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14999:3..719+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |