mRNA_E-siliculosus-1a_F_contig1499.2894.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1499.2894.1
Unique NamemRNA_E-siliculosus-1a_F_contig1499.2894.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: D7FVL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL1_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.370e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 2 
Query:  119 MMAERATWSQWTEWLRVPLQYAAASGNQDVVHGLLMGGARANTIDDEGCT 268
            MMAERATWSQWTEWLRVPLQYAAASGNQDVVHGLLMGGARANTIDDEGCT
Sbjct:    1 MMAERATWSQWTEWLRVPLQYAAASGNQDVVHGLLMGGARANTIDDEGCT 50
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.130e-21
Identity = 75/178 (42.13%), Postives = 95/178 (53.37%), Query Frame = 2 
Query:  764 GRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTDYL---RTPYSGDCFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSMAGRASCETGDEGGAGSNTAGGDXXXXXXXXVAKGKLSKGGGHGEPEAASGGWNGTEIDDESPGLTELVALLVGLEPEGVFRTVLGFV 1288
            G T LH  C  Q  G+E  ++LLL+ GADE AV N G TP D+L          C   +I R +LLLARAPA+RAWRRRCWLVMLRS    A   + +TGD    GSN  G            +   S GGG     +   G     ++  + GL  +VA +VGL PE VFR++L F+
Sbjct:  280 GTTPLHRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDAD-EGSNDVGDRKDGKCKGARRENGESAGGG---VRSRMNGAGEVGVEGGASGLASIVASVVGLGPEEVFRSILSFL 453
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 7.920e-21
Identity = 81/183 (44.26%), Postives = 103/183 (56.28%), Query Frame = 2 
Query:  752 RDARGRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTDYLRTPYSGD----CFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSMAGRASCETGDEGGAGSNTAGGDXXXXXXXXVAKGKLSKGGGHGEPEAASGGWNGTEIDDESPGLTELVALLVGLEPEGVFRTVLGFV 1288
            +D  G T LHL C  Q  GLE  ++LLLR GADE A+ N G+TP D L    + +    C + +I+R +LLLARAPAD+A RRRCWLVMLRS        + ETGD    GSN AG   XXX XXX                +   G     +D  + GL  +V  +VGLEPE VFR+++GF+
Sbjct:  549 QDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATTDETGDAH-EGSNDAGDRDXXXCXXXXXXXXXXX---XXRVRSPMNGAGEVGVDGGAGGLASIVNSVVGLEPEEVFRSIVGFL 727
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.500e-20
Identity = 81/217 (37.33%), Postives = 103/217 (47.47%), Query Frame = 2 
Query:  752 RDARGRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTDYLRTPYS-----GDCFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSMAGRASCET--GDEGGAGSNTAGGDXXXXXXXXVA---KGKLSKGGGHGEPEAASGGWNGTEIDDESPGLTEL----------------------------VALLVGLEPEGVFRTVLGFV 1288
            R  +G T LH  C  +  GLE A+++LLR GADE  +   G +P D+L   Y          QD+IDR +LLL+RAPADRAWRRR WLVMLRSR S A    C +  G + G G    G +         A   +   ++ G  GE EA  G     E+ D + GL  L                            V LL+GL  EGVFR V+GF+
Sbjct:   14 RGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSGGYDHGDGGEVGGSEMARSEGMAGADYGRPGTTRNGAGGEVEAGGG----EEVQDIAAGLLGLRRKSVVHTASNDGCVVGAEGGEEGLRLEVLLLLGLGLEGVFRAVVGFL 226
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: A0A6H5J7H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.660e-19
Identity = 75/190 (39.47%), Postives = 96/190 (50.53%), Query Frame = 2 
Query:  752 RDARGRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTD---YLRTPYSGDCFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSMAGRASCETGDEGGAGSNTAGGDXXXXXXXXVAKGKLSKGGGHGEPEAASGGW-----NGTE---IDDESPGLTELVALLVGLEPEGVFRTVLGFV 1288
            +D  G T LH  C  Q  GLE  + LLLR GADE AV +   TP D   YL         + +I+R +LLLARAP +RAW  RCWLVMLRS  +  GRAS +          T G D           GK    G   E   ++G W     NG     ++  + G   +VA +VGLEPE VFR+++GF+
Sbjct:  105 QDTDGDTPLHRACYWQHKGLEATVGLLLRSGADETAVNSADETPADLLGYLDDDDGKRYSEAEIERVRLLLARAPTNRAWLGRCWLVMLRS-CAKTGRASTD---------ETVGADEDSNDAGDRKSGKFK--GVRRENGESAGSWVRSRMNGAGEVGVEGGAGGWASIVASVVGLEPEKVFRSIVGFL 282
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.820e-19
Identity = 73/180 (40.56%), Postives = 91/180 (50.56%), Query Frame = 2 
Query:  755 DARGRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTDYLRTPYSGD--CFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSMAGRASCETGDEGGAGSNTAGGDXXXXXXXXVAKGKLSKGGGHGEPEAASGGWNGTEIDDESPGLTELVALLVGLEPEGVFRTVLGFV 1288
            DA G T LH  C  QR GL  +I+LLLR GADE A   RGRTP D L    + +  C  D++DRA+LLL RAP DR WRRR WLV+LRSRT +      +   + G     A              GK ++                 ++   S G+ EL   L  LEPE VFR+VLGF+
Sbjct:  339 DATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTIVVAHRCAKGASDSGLSLCQA-----------RRNGKGAR----------------IDVAGNSSGVVEL---LTELEPEAVFRSVLGFL 488
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.220e-19
Identity = 75/187 (40.11%), Postives = 100/187 (53.48%), Query Frame = 2 
Query:  764 GRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTDYLRTPYSGD----CFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSMAGRASCETGDEGGAGSNTAGGDXXXXXXXXVAKGKLSKGGGHGEPEAASGGW-----NGTE---IDDESPGLTELVALLVGLEPEGVFRTVLGFV 1288
            G T LH  C  Q  G+E  ++LLLR GADE A+ N  +TP D L    + +    C + +I++ +LL+ARAPA+RAWRRRCWLVMLRS    A RA+ E           A GD      XX             E   ++GGW     NG     +D  + GL  +V  +VGLEPE VFR+++GF+
Sbjct:  257 GGTPLHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTA-RATTE-----------ATGDADEGSKXXXXXXXXXXXXARRENGESAGGWLRSRMNGAGEVGVDIGAAGLASIVNSVVGLEPEEVFRSIVGFL 431
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.490e-18
Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = 2 
Query:  752 RDARGRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTDYLRTPYSGD----CFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSMAGRASCETGDEGGAGSNTAG 1087
            +D  G T LH+ C  Q  GLE  ++LLLR GADE A+ N G+TP   L    + +    C + +I+R ++LLARAPADRAWRRRCWLVMLRS    A   + ETGD    GSN AG
Sbjct:  335 QDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATTDETGDAH-EGSNDAG 449
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.700e-18
Identity = 73/188 (38.83%), Postives = 96/188 (51.06%), Query Frame = 2 
Query:  764 GRTLLHLVCRGQRGGLEEAIELLLRRGADEQAVCNRGRTPTDYLRTPYS--------GDCFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSRTSM-----AGRASCETGDEGGAGSNTAGGDXXXXXXXXVAKGKLSKGGGHGEPEAASGGWNGTEIDDESPGLTELVALLVGLEPEGVFRTVLGFV 1288
            G T LHLV   +    ++ +++LLRRGA EQAV   G+ P D  +            GD    +++RA  LLARAPADR WRRRCWL+MLR RT+       GR     G + G G     GD        V +   S+G G        GG    E+D     L  LV++LV LE +GVFRT+LG++
Sbjct:  324 GSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERTNKERTIHGGRR--RKGKKVGNGEGLLLGDGKRGGSNNVRRSGRSRGRG--------GGRAAVEVD-----LRGLVSVLVCLESDGVFRTILGYI 496
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.740e-16
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 2 
Query:  752 RDARGRTLLHLVCRGQRGGL-EEAIELLLRRGADEQAVCNRGRTPTDYLR-----------TPYSGDCFQDDIDRAQLLLARAPADRAWRRRCWLVMLRSR 1018
            +D  GR+ LH  C G   G    A++LLLR GA E A+  RG TP+DYLR           TP + +  Q ++ RA +LLARAPADRAWRRRCWLVMLR+R
Sbjct:  301 QDNAGRSALHWACIGCLSGTGRTAVDLLLRWGASETALDTRGETPSDYLRRGAAAVASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRAR 401
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1499.2894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL1_ECTSI2.370e-24100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRZ8_ECTSI1.130e-2142.13Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWW4_9PHAE7.920e-2144.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI8_ECTSI1.500e-2037.33EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5J7H5_9PHAE1.660e-1939.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLL7_ECTSI3.820e-1940.56Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE4.220e-1940.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS36_ECTSI1.490e-1850.86Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FXA8_ECTSI1.700e-1838.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LE08_ECTSI3.740e-1651.49Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1499contigE-siliculosus-1a_F_contig1499:21145..24559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1233
Model size2021
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
KEGG koko:K21440
Seed eggNOG ortholog2880.D8LRZ8
Seed ortholog evalue4.1e-21
Seed ortholog score109.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1499.2894.1prot_E-siliculosus-1a_F_contig1499.2894.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1499 22606..23838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.5841336-UTR-E-siliculosus-1a_F_contig1499:21144..218411622928008.5841336-UTR-E-siliculosus-1a_F_contig1499:21144..21841Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 21145..21841 -
1696318770.4439528-UTR-E-siliculosus-1a_F_contig1499:21144..218411696318770.4439528-UTR-E-siliculosus-1a_F_contig1499:21144..21841Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 21145..21841 -
1622928008.5994546-UTR-E-siliculosus-1a_F_contig1499:22572..226051622928008.5994546-UTR-E-siliculosus-1a_F_contig1499:22572..22605Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 22573..22605 -
1696318770.4544675-UTR-E-siliculosus-1a_F_contig1499:22572..226051696318770.4544675-UTR-E-siliculosus-1a_F_contig1499:22572..22605Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 22573..22605 -
1622928008.6327918-UTR-E-siliculosus-1a_F_contig1499:23838..238531622928008.6327918-UTR-E-siliculosus-1a_F_contig1499:23838..23853Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 23839..23853 -
1696318770.4706197-UTR-E-siliculosus-1a_F_contig1499:23838..238531696318770.4706197-UTR-E-siliculosus-1a_F_contig1499:23838..23853Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 23839..23853 -
1622928008.6472468-UTR-E-siliculosus-1a_F_contig1499:24516..245591622928008.6472468-UTR-E-siliculosus-1a_F_contig1499:24516..24559Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 24517..24559 -
1696318770.4835298-UTR-E-siliculosus-1a_F_contig1499:24516..245591696318770.4835298-UTR-E-siliculosus-1a_F_contig1499:24516..24559Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 24517..24559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.6180983-CDS-E-siliculosus-1a_F_contig1499:22605..238381622928008.6180983-CDS-E-siliculosus-1a_F_contig1499:22605..23838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 22606..23838 -
1696318770.4625313-CDS-E-siliculosus-1a_F_contig1499:22605..238381696318770.4625313-CDS-E-siliculosus-1a_F_contig1499:22605..23838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 22606..23838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1499.2894.1

>prot_E-siliculosus-1a_F_contig1499.2894.1 ID=prot_E-siliculosus-1a_F_contig1499.2894.1|Name=mRNA_E-siliculosus-1a_F_contig1499.2894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=411bp
MSARYAKRKRLEGLAGDIFGMMAERATWSQWTEWLRVPLQYAAASGNQDV
VHGLLMGGARANTIDDEGCTPLHFAARSGREEVVSTLLACGAEENGLDGD
AGNSAVMLAAQEGYLTVVDALLAANADPNIRNSEGYSALDKAAAEGHVGI
LKAILAHGADVNAIDETDGVSALHHAAASGQASAIDELLEAGGDIEMRTT
TEGYTPLCSAAEESQSNTITALMEHGANAEVRDARGRTLLHLVCRGQRGG
LEEAIELLLRRGADEQAVCNRGRTPTDYLRTPYSGDCFQDDIDRAQLLLA
RAPADRAWRRRCWLVMLRSRTSMAGRASCETGDEGGAGSNTAGGDGRDGK
SGKVAKGKLSKGGGHGEPEAASGGWNGTEIDDESPGLTELVALLVGLEPE
GVFRTVLGFV*
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mRNA from alignment at E-siliculosus-1a_F_contig1499:21145..24559-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1499.2894.1 ID=mRNA_E-siliculosus-1a_F_contig1499.2894.1|Name=mRNA_E-siliculosus-1a_F_contig1499.2894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3415bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1499:21145..24559- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCTAGCGTACTTCGGCGTTAGAGCACACGGCCAAACCACAGGTCGGTG
TAACCTGCAGTTTTTTGTTGTTGCTATATCTTGCTACATGTGTAGAAGGT
ACATGTAATCTTGTCTTGGGGAGCACAGCAGTGTACAGCAGTTCCCTATA
TGACACGAGATAACACACCCCCTGGCCCGATTTTCAAAGCTCGATTACTC
GACGACGAAGAGGATACATAAACGAAATGATACATTTTCGAAAAGCTCTC
AACGAGACGGTTCCAACACCGCCGTTTTCGGCGCTGTGAGTCTTCCTGCT
GTTGAGAAACCGAGCTTTGAAAATCGGTCAGGGGGGGTGTTATCTTGTGT
CATATACGGTATGCCGGAAAAGAGTCTTCTGTAACTTGTAGACTGGAAGA
GTGAACAAATTTGCACAAGGCCCAAAATCACCTTCCGAGACTTCGTGTTG
TAGCTAAGTAGTGTAGTCTACGGCGGCACAAACGCGAGACACAGAGTATT
GTAACCACAAGGCAGAACGCTGCATATATACCGATCGAAGCACTGCTGTG
TTCACACACTACTGCACATACAACCATCCGCATCTCAGTTGCTTTTCGTT
CGCGGCGTTCCCTCGGTACGGCACTACTGCTGTACATATAGCTAGTCTAC
AAGCTTGTTTGCTGTCCGGCAACTGGCCGATCTCCCATTCATTCAAATAT
GCGCAGGGGGTGCACCTTAGTATGAGCGCGAGGTACGCCAAGCGAAAGCG
CCTGGAAGGGCTTGCAGGCGACATCTTCGGAATGATGGCCGAACGAGCAA
CATGGAGTCAGTGGACAGAATGGCTCCGGGTTCCGCTGCAGTACGCTGCC
GCCAGCGGCAATCAAGATGTTGTCCACGGCCTGCTGATGGGCGGGGCGAG
GGCAAATACGATTGATGATGAGGGATGCACCCCGCTGCACTTCGCTGCGA
GGTCTGGAAGGGAGGAGGTGGTGAGTACCCTCTTGGCCTGTGGGGCAGAA
GAGAACGGTCTTGACGGCGATGCTGGCAATTCGGCCGTAATGCTTGCGGC
ACAGGAAGGCTACCTGACCGTCGTGGATGCTCTCTTGGCCGCCAATGCCG
ACCCAAACATTCGCAACTCTGAAGGATACTCGGCGCTGGATAAGGCCGCT
GCGGAGGGGCACGTTGGCATTCTGAAAGCCATCCTCGCGCATGGAGCGGA
TGTGAACGCCATCGACGAAACCGATGGCGTGTCAGCGTTGCACCACGCAG
CTGCAAGTGGTCAAGCGAGTGCTATCGATGAACTCCTCGAAGCAGGAGGT
GACATCGAAATGAGAACCACTACAGAGGGGTACACGCCTCTTTGCTCTGC
CGCGGAGGAGAGCCAAAGCAACACCATTACTGCCCTGATGGAGCACGGAG
CTAACGCTGAGGTACGTGATGCCCGAGGGCGTACGCTACTGCACTTGGTT
TGTCGTGGACAGCGTGGTGGCCTGGAGGAGGCCATTGAACTTTTGCTGCG
ACGAGGGGCGGATGAACAGGCCGTATGCAACCGTGGTCGGACTCCAACTG
ACTATCTCCGTACGCCGTATTCCGGGGACTGTTTTCAAGATGACATCGAT
CGCGCTCAGCTGCTACTGGCGCGGGCTCCGGCAGACAGGGCTTGGCGTCG
CCGGTGCTGGCTCGTCATGCTTCGCTCGCGCACTTCGATGGCGGGGAGAG
CCAGCTGCGAAACAGGCGATGAGGGCGGCGCTGGTTCAAATACTGCCGGA
GGAGACGGTCGAGACGGGAAAAGCGGGAAGGTGGCAAAGGGCAAGCTTTC
GAAGGGGGGTGGGCACGGCGAGCCTGAGGCAGCGAGTGGCGGCTGGAATG
GGACTGAAATCGATGACGAGAGCCCGGGCTTGACGGAACTGGTGGCATTG
CTAGTAGGCCTCGAGCCGGAAGGCGTGTTTCGCACGGTCCTGGGCTTCGT
CTGATTGAGGACGACCGAAAAATCTGGAAGTGGTTTGGTGAGTTCGATCA
CGCGTGTGGTTACTGAGACATGATTTGAACATCGGAAACTTTCCCGACCG
CGTCAAGACTCTTTAGATTGGCTTGTTCCGCGATGGCACTATCAAGGTAC
GCCGGATGTGATGTACCAGTGTCCATGTGAGACACCACCGAAGTTGGGCT
CATGGCGAACCCGAGTACTTTGGCATCAATCGATGCACATAAACTCAAAC
CACAACGTCCAACCCGTGGCTTTGATGTTGTACATCCTGCATAGGTGAGG
AGTCCAGGTGAATTCGTCCCCGTCGTGGGACTAAGGCAGAGGGTCGTACC
CTCTTGGGAGTGTTATCCGATATTTGAGATACTGAAAGTATTTCGTCGAC
ACCAACCCCATGGCGGGTGCAGGGCAGGGGGTAGCTGCGAAACCGCACAA
TGTTCGCAATGTAGAGCTGTTGGGGAGATTGTGGGTGACGTAGAACTCTT
GAACGAGCCGAAAGCGGGGGCGGTAAGGCGAGGACCTGTGAAAAATCGGC
CATCAAGTAAGTATTGACTGGTACGCGTAGAGCATGCGTACTCTTTGGTG
CTGCTGTGGACCATGCATGCACCCGTTTCCATCCAGCGCTCAGCGCACGT
CCGGATACACATTCGGCCGACATAGCAGTTCATGGGGTTTTCCGTATGAG
TCTGCTCTTGCTGGCAGTTCATGCAACTAACGAGTCACGTGGATATTTGT
TGTTGTTGTTGTTGGCAGGCCATATGGGCGCGTCGGTCCACTTCGGGCTA
AACCTGAAGCCGCCGTTCAACACTAGAGACGGAGCGGAACCCTGCTCGTT
TGGAGATGATGTTCTCCGCTGAGTTGTGATTCTACTCTAGACCTGATGAC
CCACGACGGGCCACTGTATCCTGGGATCATTTCCTACTTTGTTGAAGCAC
GCTCGCCGCCGGTTGCGAATCACAATGCTTCGGACCGGTGTCATCAGGTA
TATACTGCTACAGAAGAACGGGTGTCCTTGTACGTTACAGGGTAGATCGC
CAAGCGTACCTAGACGGCCAGCGTCAACGACTTTGCGAGGGAGAGAACGC
CTTTGAATGATTTATCCCAAAATATGTTTCCTTTGCGAAGAGTGAGAATG
GGCACAAGTAGCCTACGCGTGTTTCCTTGCTGTAACCTGCGATGGATCTC
TCTCGGCGCGTGCATCGATCAGCGTGTTGGCTCCGGTAATTTTTTTAGTG
GGCATGGTCTACCAATGCTTCTTTTCGCTGATTCAGCGTTATTTGCTCTG
AGGTTTGTTGTCAAATTGCACCACACTTGGTACTCTAACCCGAGCCTAAT
TGGTATCTTGGAGGCAAAGCACTGTTTTGAGACCACGTATGTACTCCGAA
CAGGATCTGCCCAAACCACGGAAGACTGCAACGGTTGGTTCCGGTCTCAG
CAGCCTGCGCGCATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1499:21145..24559-

>mRNA_E-siliculosus-1a_F_contig1499.2894.1 ID=mRNA_E-siliculosus-1a_F_contig1499.2894.1|Name=mRNA_E-siliculosus-1a_F_contig1499.2894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2466bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1499:21145..24559- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGCGAGGTACGCCAAGCGAAAGCGCCTGGAAGGGCTTGCAGGCGA
CATCTTCGGAATGATGGCCGAACGAGCAACATGGAGTCAGTGGACAGAAT
GGCTCCGGGTTCCGCTGCAGTACGCTGCCGCCAGCGGCAATCAAGATGTT
GTCCACGGCCTGCTGATGGGCGGGGCGAGGGCAAATACGATTGATGATGA
GGGATGCACCCCGCTGCACTTCGCTGCGAGGTCTGGAAGGGAGGAGGTGG
TGAGTACCCTCTTGGCCTGTGGGGCAGAAGAGAACGGTCTTGACGGCGAT
GCTGGCAATTCGGCCGTAATGCTTGCGGCACAGGAAGGCTACCTGACCGT
CGTGGATGCTCTCTTGGCCGCCAATGCCGACCCAAACATTCGCAACTCTG
AAGGATACTCGGCGCTGGATAAGGCCGCTGCGGAGGGGCACGTTGGCATT
CTGAAAGCCATCCTCGCGCATGGAGCGGATGTGAACGCCATCGACGAAAC
CGATGGCGTGTCAGCGTTGCACCACGCAGCTGCAAGTGGTCAAGCGAGTG
CTATCGATGAACTCCTCGAAGCAGGAGGTGACATCGAAATGAGAACCACT
ACAGAGGGGTACACGCCTCTTTGCTCTGCCGCGGAGGAGAGCCAAAGCAA
CACCATTACTGCCCTGATGGAGCACGGAGCTAACGCTGAGGTACGTGATG
CCCGAGGGCGTACGCTACTGCACTTGGTTTGTCGTGGACAGCGTGGTGGC
CTGGAGGAGGCCATTGAACTTTTGCTGCGACGAGGGGCGGATGAACAGGC
CGTATGCAACCGTGGTCGGACTCCAACTGACTATCTCCGTACGCCGTATT
CCGGGGACTGTTTTCAAGATGACATCGATCGCGCTCAGCTGCTACTGGCG
CGGGCTCCGGCAGACAGGGCTTGGCGTCGCCGGTGCTGGCTCGTCATGCT
TCGCTCGCGCACTTCGATGGCGGGGAGAGCCAGCTGCGAAACAGGCGATG
AGGGCGGCGCTGGTTCAAATACTGCCGGAGGAGACGGTCGAGACGGGAAA
AGCGGGAAGGTGGCAAAGGGCAAGCTTTCGAAGGGGGGTGGGCACGGCGA
GCCTGAGGCAGCGAGTGGCGGCTGGAATGGGACTGAAATCGATGACGAGA
GCCCGGGCTTGACGGAACTGGTGGCATTGCTAGTAGGCCTCGAGCCGGAA
GGCGTGTTTCGCACGGTCCTGGGCTTCGTCTGAATGAGCGCGAGGTACGC
CAAGCGAAAGCGCCTGGAAGGGCTTGCAGGCGACATCTTCGGAATGATGG
CCGAACGAGCAACATGGAGTCAGTGGACAGAATGGCTCCGGGTTCCGCTG
CAGTACGCTGCCGCCAGCGGCAATCAAGATGTTGTCCACGGCCTGCTGAT
GGGCGGGGCGAGGGCAAATACGATTGATGATGAGGGATGCACCCCGCTGC
ACTTCGCTGCGAGGTCTGGAAGGGAGGAGGTGGTGAGTACCCTCTTGGCC
TGTGGGGCAGAAGAGAACGGTCTTGACGGCGATGCTGGCAATTCGGCCGT
AATGCTTGCGGCACAGGAAGGCTACCTGACCGTCGTGGATGCTCTCTTGG
CCGCCAATGCCGACCCAAACATTCGCAACTCTGAAGGATACTCGGCGCTG
GATAAGGCCGCTGCGGAGGGGCACGTTGGCATTCTGAAAGCCATCCTCGC
GCATGGAGCGGATGTGAACGCCATCGACGAAACCGATGGCGTGTCAGCGT
TGCACCACGCAGCTGCAAGTGGTCAAGCGAGTGCTATCGATGAACTCCTC
GAAGCAGGAGGTGACATCGAAATGAGAACCACTACAGAGGGGTACACGCC
TCTTTGCTCTGCCGCGGAGGAGAGCCAAAGCAACACCATTACTGCCCTGA
TGGAGCACGGAGCTAACGCTGAGGTACGTGATGCCCGAGGGCGTACGCTA
CTGCACTTGGTTTGTCGTGGACAGCGTGGTGGCCTGGAGGAGGCCATTGA
ACTTTTGCTGCGACGAGGGGCGGATGAACAGGCCGTATGCAACCGTGGTC
GGACTCCAACTGACTATCTCCGTACGCCGTATTCCGGGGACTGTTTTCAA
GATGACATCGATCGCGCTCAGCTGCTACTGGCGCGGGCTCCGGCAGACAG
GGCTTGGCGTCGCCGGTGCTGGCTCGTCATGCTTCGCTCGCGCACTTCGA
TGGCGGGGAGAGCCAGCTGCGAAACAGGCGATGAGGGCGGCGCTGGTTCA
AATACTGCCGGAGGAGACGGTCGAGACGGGAAAAGCGGGAAGGTGGCAAA
GGGCAAGCTTTCGAAGGGGGGTGGGCACGGCGAGCCTGAGGCAGCGAGTG
GCGGCTGGAATGGGACTGAAATCGATGACGAGAGCCCGGGCTTGACGGAA
CTGGTGGCATTGCTAGTAGGCCTCGAGCCGGAAGGCGTGTTTCGCACGGT
CCTGGGCTTCGTCTGA
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