mRNA_E-siliculosus-1a_F_contig1496.2883.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI) HSP 1 Score: 841 bits (2173), Expect = 3.690e-301 Identity = 496/544 (91.18%), Postives = 502/544 (92.28%), Query Frame = 3
Query: 177 MQQQDVGAEEETDEASGDXXXXXXXXXXXXXXXXXXXPAVPQQAPALQXXXXHQGRVVSRXXXXXXXXWGGGSAAGYECLICGKSFSKACKLARHAATHTGEKPFVCSEAGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGGTAAPRRVLPLMKTTTAPLLEASRLERERAVNGSGSGGGGAQGWKFTCGSCGRNFLDSYHLQRHIKAIHEAPRPYTCDHPVVVPPRTATSAASTADGAAAAVATASPGGSRARCERQGEEVVAEAHGDAKEGKDVARAKGSVGGVEAEGGATERGLQQQPLQKQQRVLGACGASFAKKWQLREHLFAAHGQSKFNSRQHRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTEGGRKRFRXXXXXXXXXXXXXXXXXXXVKREHQ*SSSSGRSSSNAAIEGPTTSPSA 1808
MQQQDVG EEETDEASGD XXXXXXXXXXXXXXX PA PQQAPA+Q HQGRVVSR WGGGS AGYECLICGKSFSKACKLARHAATHTGEKPFVCSEAGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGG APRRVLPLMKTTTAPLLEASRLERERAVNGSGSGGGGAQGWKFTCG+CGRNFLD+YHLQRHIKAIHEAPRPYTCDHPVVVPP TA SAAS ADG AAA ATA PGGSRARCERQGEEVVAEA G+AKEGKDV+RAKGSVGGVEAEGGATERGLQQQP QKQQRVLG CGASFAKKWQLREHLFA HGQSKFNSRQHRCSHAGCGR FDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTEGGRKRFRXXXXXXXXXXXXXXXX VKREHQ SSS G SNAA E PTT+PSA
Sbjct: 1 MQQQDVGTEEETDEASGDNDSXXXXXXXXXXXXXXXAPAGPQQAPAVQQQRRHQGRVVSRRSAGDGSSWGGGSVAGYECLICGKSFSKACKLARHAATHTGEKPFVCSEAGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGGIGAPRRVLPLMKTTTAPLLEASRLERERAVNGSGSGGGGAQGWKFTCGNCGRNFLDNYHLQRHIKAIHEAPRPYTCDHPVVVPPPTAPSAASVADGTAAAFATAFPGGSRARCERQGEEVVAEARGEAKEGKDVSRAKGSVGGVEAEGGATERGLQQQPQQKQQRVLGVCGASFAKKWQLREHLFAEHGQSKFNSRQHRCSHAGCGRSFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTEGGRKRFRXXXXXXXXXXXXXXXXVKHVKREHQ-SSSGGSXXSNAAKEAPTTTPSA 543
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Match: G3MR60_AMBMU (Uncharacterized protein n=2 Tax=Amblyomma TaxID=6942 RepID=G3MR60_AMBMU) HSP 1 Score: 73.2 bits (178), Expect = 7.110e-10 Identity = 47/145 (32.41%), Postives = 68/145 (46.90%), Query Frame = 3
Query: 1209 CGASFAKKWQLREHLFAAHGQSKFNSRQHRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHP--FRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAH 1637
C +F K LR H F ++ C GC R F PS+L AH+ THK + C +GC A F + L H K +H F CG C +VF + + H TH+ + + C GCG+ + +++NL H +AH
Sbjct: 121 CPKAFTKHQHLRVHSFEHTKVLPYS-----CPEPGCDRAFLLPSRLRAHQNTHKG-YPCGTEGCEAVFTKWTLLLKHRKVEHQKQFSCGTCGRVFFSKWNLTTHTETHSSDRES-----FCCPHEGCGRFYYQEKNLRQHILSAH 254
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Match: L7MFM1_RHIPC (Putative transcription factor iiia strongylocentrotus purpuratus (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MFM1_RHIPC) HSP 1 Score: 70.5 bits (171), Expect = 2.870e-9 Identity = 39/115 (33.91%), Postives = 56/115 (48.70%), Query Frame = 3
Query: 1299 CSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHP--FRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAH 1637
C GC + F PSKL AH+ THK + C +GC A F + L H K H F C CD+VF + + H TH+ + + C GC + + +++NL H +AH
Sbjct: 2 CPEPGCDKAFLLPSKLRAHQNTHKG-YSCDVEGCEAVFTKWTLLQKHRKTDHQKQFPCPTCDRVFFTKWNLVTHMETHSTDRES-----FCCPHEGCSRFYFQEKNLRQHISSAH 110
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Match: A0A131XAS3_9ACAR (Putative transcription factor iiia strongylocentrotus purpuratus (Fragment) n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131XAS3_9ACAR) HSP 1 Score: 70.5 bits (171), Expect = 2.930e-9 Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = 3
Query: 1299 CSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHP--FRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAH 1637
C GC + F PSKL AH+ THK + C +GC A F + L H K H F C CD+VF + + H TH+ + F PY GC + + +++NL H +AH
Sbjct: 2 CPEPGCDKAFLLPSKLRAHQNTHKG-YPCDAEGCEAVFTKWTLLQKHRKMDHQKQFPCPTCDRVFFTKWNLTTHTETHSTDRES-FCCPYD----GCSRFYFQEKNLRQHISSAH 110
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Match: A0A8J5UXY0_9HYME (Uncharacterized protein n=6 Tax=Cotesia TaxID=32390 RepID=A0A8J5UXY0_9HYME) HSP 1 Score: 69.3 bits (168), Expect = 2.050e-8 Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 3
Query: 1314 CGRFFDRPSKLAAHEKTH-KARFVCQFDGCG---AAFVLASGLNLHLKEKHP-----FRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTEGGRKR 1658
C F++ L H+ H + F Q CG ++F L H+ EKH F+CGVCDKV+++ + +H+ATH + +PY C++ CGK+F NL H+RT RKR
Sbjct: 465 CKDLFNKEEDLLIHDLYHTRTTFPDQERKCGHCSSSFFNRKDLQNHISEKHSGLQMLFKCGVCDKVYEKWSSLDVHEATHRQD------KPYLCDL--CGKSFKHSNNLRGHKRTHLDVAKRKR 580
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Match: UPI0006D4E113 (zinc finger protein 182-like isoform X1 n=2 Tax=Microplitis demolitor TaxID=69319 RepID=UPI0006D4E113) HSP 1 Score: 65.5 bits (158), Expect = 3.250e-7 Identity = 36/115 (31.30%), Postives = 58/115 (50.43%), Query Frame = 3
Query: 1314 CGRFFDRPSKLAAHEKTH-KARFVCQFDGCG---AAFVLASGLNLHLKEKHP-----FRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRT 1631
C F++ L H+ H + F Q CG +F L H+ +KH F+CG+CDK++++ + +H+ATH + +PY C++ CGK+F NL H+RT
Sbjct: 489 CKDLFNKEEDLLIHDLYHTRTTFPDQERKCGHCSLSFFNRKDLQNHISDKHSGLQMLFKCGICDKIYEKWSSLDVHEATHRQD------KPYLCDL--CGKSFKHSNNLRGHKRT 595
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Match: A0A6P8RMA0_GEOSA (transcription factor IIIA isoform X1 n=3 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8RMA0_GEOSA) HSP 1 Score: 56.6 bits (135), Expect = 9.860e-5 Identity = 39/129 (30.23%), Postives = 54/129 (41.86%), Query Frame = 3
Query: 1353 HEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFR--CGVCDKVFDREDKMQIHQATHARAGD--------------------------GDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTEGGRK 1655
HEK H+ + C+ D C + + H+K H C VC K F R+D ++ HQ HA+ + + IRPY C V GCGK+F K++L H AH RK
Sbjct: 201 HEKVHEG-YACKRDNCLFVGITWTEYLKHMKSCHAEEIICQVCSKKFKRKDHLKEHQKIHAKGREVYRCPREGCERTYSTVFNVQSHIMSFHEGIRPYVCEVSGCGKSFAMKQSLERHS-VAHDPEKRK 327 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1496.2883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1496.2883.1 >prot_E-siliculosus-1a_F_contig1496.2883.1 ID=prot_E-siliculosus-1a_F_contig1496.2883.1|Name=mRNA_E-siliculosus-1a_F_contig1496.2883.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=568bp MASVGLMQCVDPSHDRSCKRRRPYQDAGAARSAPATSRQRTALACTMQQQback to top mRNA from alignment at E-siliculosus-1a_F_contig1496:22815..27432- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1496.2883.1 ID=mRNA_E-siliculosus-1a_F_contig1496.2883.1|Name=mRNA_E-siliculosus-1a_F_contig1496.2883.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1496:22815..27432- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1496:22815..27432- >mRNA_E-siliculosus-1a_F_contig1496.2883.1 ID=mRNA_E-siliculosus-1a_F_contig1496.2883.1|Name=mRNA_E-siliculosus-1a_F_contig1496.2883.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1496:22815..27432- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |