mRNA_E-siliculosus-1a_F_contig14953.2879.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14953.2879.1
Unique NamemRNA_E-siliculosus-1a_F_contig14953.2879.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: A0A0F9YCN4_9ZZZZ (DctM domain-containing protein n=17 Tax=root TaxID=1 RepID=A0A0F9YCN4_9ZZZZ)

HSP 1 Score: 625 bits (1612), Expect = 5.290e-224
Identity = 332/342 (97.08%), Postives = 336/342 (98.25%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRGQSAS LIDM+MTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFS YSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAI LEFI+FRSLK PDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQ IL AVGINEAGPLGVLIAIS+AFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF
Sbjct:   61 PMFILAADIMTRGQSASRLIDMVMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSAYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAIFLEFIVFRSLKFPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQAILEAVGINEAGPLGVLIAISVAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: A0A1K1Y6K4_9GAMM (TRAP transporter, DctM subunit n=2 Tax=Marinospirillum TaxID=64968 RepID=A0A1K1Y6K4_9GAMM)

HSP 1 Score: 579 bits (1493), Expect = 6.900e-206
Identity = 301/341 (88.27%), Postives = 320/341 (93.84%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFI 1023
            P+FILAADIMTRGQSAS LI+M+M F+GH+KGGLAVSTA SCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIIN+SDIAFLIPPSIGMIIYGVIS TSI ELFIAGIGPGL+IL MFS Y + YAIINKVPTEPKASWK R  AVQ+ALWPLGFPV+IVGGIYGGVFSPTEAAAACVLYA++LEFI+FRSLKL DIY IAKSTGLITAVVFILVA GNGFSWIISFAQIPQ IL  +GINEAGP GVLIAI++AFF+ACMFVDPIVVILVLTPIFAPAIA +GLDPVLVGVLITL VAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPF+
Sbjct:   61 PMFILAADIMTRGQSASRLINMVMAFIGHIKGGLAVSTATSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINASDIAFLIPPSIGMIIYGVISGTSIGELFIAGIGPGLLILAMFSAYCIAYAIINKVPTEPKASWKERLTAVQQALWPLGFPVIIVGGIYGGVFSPTEAAAACVLYAVVLEFIVFRSLKLMDIYRIAKSTGLITAVVFILVAVGNGFSWIISFAQIPQAILGGLGINEAGPTGVLIAIAVAFFIACMFVDPIVVILVLTPIFAPAIAGTGLDPVLVGVLITLMVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFV 401          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: A0A2N7TUV2_9GAMM (C4-dicarboxylate ABC transporter permease n=1 Tax=Halomonas endophytica TaxID=2033802 RepID=A0A2N7TUV2_9GAMM)

HSP 1 Score: 578 bits (1490), Expect = 1.970e-205
Identity = 300/342 (87.72%), Postives = 323/342 (94.44%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRGQSA+ LIDM+M+FVGHVKGGLAVSTA SCTLFGAVSGSTQATVVAVG PLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIG IIYG++S TSI+ELFIAGIGPGL+ILLMF+IYSV+YA ++ VPTEPKA+W  R  A Q+ALWPLGFP+LIVGGIYGG+FSPTEAAAACVLYA  LEF+IFRSLK+  I+TIA+STGLITAVVFILVA GN F+WIISFAQIPQTILAAVGINEAGP+GVL+ ISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF
Sbjct:   61 PMFILAADIMTRGQSANRLIDMVMSFVGHVKGGLAVSTATSCTLFGAVSGSTQATVVAVGGPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGFIIYGIVSGTSISELFIAGIGPGLLILLMFAIYSVIYATVHNVPTEPKATWGQRLTATQRALWPLGFPILIVGGIYGGIFSPTEAAAACVLYAFFLEFLIFRSLKVSHIFTIARSTGLITAVVFILVAVGNSFAWIISFAQIPQTILAAVGINEAGPVGVLVVISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: UPI000DAE4914 (TRAP transporter large permease n=1 Tax=Halomonas lactosivorans TaxID=2185141 RepID=UPI000DAE4914)

HSP 1 Score: 571 bits (1472), Expect = 1.080e-202
Identity = 294/342 (85.96%), Postives = 322/342 (94.15%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRGQSA  LI+M+M F+GH+KGGLAVSTA SCTLFGAVSGSTQATVVAVGSPLRPRMLKAGY DSFTLALIIN+SDIAFLIPPSIGMIIYGVIS TSI ELFIAGIGPGL+ILLMF+IYS++YA++  VPTEP++SW+ RA+A++ ALWPLGFPV+IVGGIYGGVFSPTEAAAACVLYA+LLEF++FRSL L DIY IAKSTGLITAVVFILVA GNGFSWIISFAQIPQ ILAAVGI+EAGP GVLIAI +AFFVACMFVDPIVVILVLTPIF PAI A+GLDPVLVG+LITLQVAIGSATPPFGCDIFTAIAIFKRPYW+VI+GTPPFIF
Sbjct:   61 PMFILAADIMTRGQSAERLINMVMAFIGHIKGGLAVSTAASCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYSDSFTLALIINASDIAFLIPPSIGMIIYGVISGTSIGELFIAGIGPGLLILLMFAIYSMIYAVVRDVPTEPRSSWRERALAIRDALWPLGFPVIIVGGIYGGVFSPTEAAAACVLYAVLLEFVVFRSLGLRDIYAIAKSTGLITAVVFILVAVGNGFSWIISFAQIPQEILAAVGIDEAGPTGVLIAICVAFFVACMFVDPIVVILVLTPIFTPAIEATGLDPVLVGILITLQVAIGSATPPFGCDIFTAIAIFKRPYWDVIKGTPPFIF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: A0A839V4V5_9GAMM (Tripartite ATP-independent transporter DctM subunit n=1 Tax=Halomonas cerina TaxID=447424 RepID=A0A839V4V5_9GAMM)

HSP 1 Score: 568 bits (1465), Expect = 1.260e-201
Identity = 292/342 (85.38%), Postives = 320/342 (93.57%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRGQSA  LI+M+M+F+GHVKGGLAVSTA SCTLFGAVSGSTQATVVAVGSPLRP++LKAGY DSFTLALIIN+SDIAFLIPPSIGMIIYGVIS TSIAELFIAGIGPGL+ILLMFS Y ++YA+I  VPTEPK++W+ RAVAV++ALWPLGFPV+IVGGIYGG+FSPTEAAAACVLYA+ LEF++FRSLKL  IY IAKSTGLITAVVFILV  GNGFSWIISFAQIPQ +LAA GINEAGP GVLIAI IAFFVACMFVDPIVVILVLTPIF PAI A+GLDPVLVG+LITLQVAIGSATPPFGCDIFTAIAIFKRPYW+VI+GTPPF+F
Sbjct:   61 PMFILAADIMTRGQSAERLINMVMSFIGHVKGGLAVSTAASCTLFGAVSGSTQATVVAVGSPLRPKLLKAGYSDSFTLALIINASDIAFLIPPSIGMIIYGVISGTSIAELFIAGIGPGLLILLMFSTYCILYAVIKNVPTEPKSTWRDRAVAVRQALWPLGFPVIIVGGIYGGIFSPTEAAAACVLYAVFLEFVVFRSLKLHHIYAIAKSTGLITAVVFILVGVGNGFSWIISFAQIPQELLAAAGINEAGPTGVLIAICIAFFVACMFVDPIVVILVLTPIFTPAIEATGLDPVLVGILITLQVAIGSATPPFGCDIFTAIAIFKRPYWDVIKGTPPFVF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: A0A063XYK5_9GAMM (TRAP-type C4-dicarboxylate transport system, large permease component n=5 Tax=Oceanospirillales TaxID=135619 RepID=A0A063XYK5_9GAMM)

HSP 1 Score: 568 bits (1464), Expect = 1.790e-201
Identity = 290/342 (84.80%), Postives = 320/342 (93.57%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRGQSA+ LI+M+M F+GH+KGGLAVSTA SCTLFGAVSGSTQATVVAVGSPLRP++LKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVIS TSI ELFIAG+GPGL+IL MFS Y + YA I+KVPTEPK+SWK R +A++ ALWPLGFPV+IVGGIYGG+FSPTEAAAACVLYA++LEFI+FRSLK  DIY IAKSTGLITAVVFILVA GNGFSWIISFAQIPQ IL  +GI++AGP+GVL AI+IAFF+ACMFVDPIVVILVLTPIFAPAIA++GLDPVLVGVLITL VAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPF+F
Sbjct:   61 PMFILAADIMTRGQSANRLINMVMAFIGHIKGGLAVSTAASCTLFGAVSGSTQATVVAVGSPLRPKLLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISGTSIGELFIAGVGPGLLILAMFSAYCIAYAYIHKVPTEPKSSWKERLIAIKDALWPLGFPVIIVGGIYGGIFSPTEAAAACVLYAVILEFIVFRSLKATDIYRIAKSTGLITAVVFILVAVGNGFSWIISFAQIPQAILGGLGIDQAGPIGVLFAIAIAFFIACMFVDPIVVILVLTPIFAPAIASTGLDPVLVGVLITLMVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFVF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: UPI00124DD151 (TRAP transporter large permease n=1 Tax=Nitrincola alkalilacustris TaxID=1571224 RepID=UPI00124DD151)

HSP 1 Score: 567 bits (1462), Expect = 3.600e-201
Identity = 292/342 (85.38%), Postives = 317/342 (92.69%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRGQSA+ L++M+M F+GH+KGGLAVSTA SCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVIS TSI ELFIAGIGPGL+IL +FSIY + YAII+ VPTEPK  W  R  AVQ+ALWPLGFPV+IVGGIYGGVFSPTEAAAACVLYA++LEFI+FRSLK  DIY IAKSTGLITAVVFILVA GNGFSWIISFAQIPQ +L   GINEAGP GVLIAI++AFF+ACMFVDPIVVILVLTPIFAPAI+++GLDPVLVG+LITL VAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPF+F
Sbjct:   61 PMFILAADIMTRGQSANRLVNMVMAFIGHIKGGLAVSTAASCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISGTSIGELFIAGIGPGLLILFLFSIYCIAYAIIHDVPTEPKTGWMERLKAVQEALWPLGFPVIIVGGIYGGVFSPTEAAAACVLYAVILEFIVFRSLKAIDIYKIAKSTGLITAVVFILVAVGNGFSWIISFAQIPQALLGTFGINEAGPTGVLIAIAVAFFIACMFVDPIVVILVLTPIFAPAISSTGLDPVLVGILITLMVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFVF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: UPI0003F780C6 (TRAP transporter large permease n=1 Tax=Marinospirillum minutulum TaxID=64974 RepID=UPI0003F780C6)

HSP 1 Score: 566 bits (1460), Expect = 7.250e-201
Identity = 288/342 (84.21%), Postives = 319/342 (93.27%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FI AAD+MTRGQSA+ L+D++M F+GH+KGGLAVSTA SCTLFGAVSGSTQATVVAVGSP+RPRMLKAGYKDSF LALI+NSSDIAFLIPPSIGMIIYGVIS TSI ELFIAGIGPGL+IL +FSIY V+YA +NKVPTEP+ASW  R  A+++ALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYA++LEF++FRSLK+ DIY IAKSTGLITAVVFILVA GNGFSWIISFA IPQT+LA +GINEAGP GVL+ I++ FFVACMFVDPIVVILVLTPIFAPAIA++GLDPVLVGVLITL VAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPF+F
Sbjct:   61 PMFIFAADVMTRGQSANRLVDLVMAFIGHIKGGLAVSTAASCTLFGAVSGSTQATVVAVGSPMRPRMLKAGYKDSFILALIVNSSDIAFLIPPSIGMIIYGVISGTSIGELFIAGIGPGLLILFVFSIYCVIYATLNKVPTEPRASWSERLTALRQALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAVILEFVVFRSLKMADIYKIAKSTGLITAVVFILVAVGNGFSWIISFAHIPQTLLAGIGINEAGPHGVLVIIALTFFVACMFVDPIVVILVLTPIFAPAIASTGLDPVLVGVLITLIVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFVF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: UPI000FD72A0B (TRAP transporter large permease n=2 Tax=Saccharospirillum TaxID=231683 RepID=UPI000FD72A0B)

HSP 1 Score: 566 bits (1459), Expect = 1.030e-200
Identity = 292/342 (85.38%), Postives = 317/342 (92.69%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRGQSA+ LIDM+M+F+GHVKGGLA+STA SCTLFGAVSGSTQATVVAVGSPLRP+MLKAGY D FTLALIIN+SDIAFLIPPSIGMIIYGVIS+TSIAELFIAG+GPGLMIL  FS+Y+++YA  N VPTEPKASW  R  AV  ALWPL FPV+IVGGIYGG+FSPTEAAA CVLYA+ LEFI+FR LKLPD+Y IAKSTGLITAVVFILVA GNGFSWIISFAQIPQ+IL AVG+NE GP GVLI+I IAFF+ACMFVDPIVVILVLTPIFAPAIAA+GLDPVLVG+LITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF
Sbjct:   61 PMFILAADIMTRGQSANRLIDMVMSFIGHVKGGLAISTATSCTLFGAVSGSTQATVVAVGSPLRPKMLKAGYSDPFTLALIINASDIAFLIPPSIGMIIYGVISETSIAELFIAGVGPGLMILAFFSLYALIYAYRNNVPTEPKASWNERGKAVLGALWPLMFPVIIVGGIYGGIFSPTEAAAVCVLYAVFLEFIVFRELKLPDMYRIAKSTGLITAVVFILVAVGNGFSWIISFAQIPQSILEAVGVNEMGPAGVLISICIAFFIACMFVDPIVVILVLTPIFAPAIAATGLDPVLVGILITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 402          
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Match: A4B9I7_9GAMM (TRAP dicarboxylate transporter, DctM subunit n=2 Tax=Reinekea TaxID=230494 RepID=A4B9I7_9GAMM)

HSP 1 Score: 565 bits (1455), Expect = 3.490e-200
Identity = 288/342 (84.21%), Postives = 321/342 (93.86%), Query Frame = 1
Query:    1 PLFILAADIMTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAVGSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIAELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALWPLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIAKSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIAISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF 1026
            P+FILAADIMTRG SA  LIDM+M+F+GHVKGGLAVSTA SCTLFGAVSGSTQATVVA+GSPLRP+MLKAGY DSFTLALIIN+SDIAFLIPPSIGMIIYGVIS+TSIAELFIAG+GPGL+IL++FSIY ++YA +N +PTE K++WK RA AVQ A+WPL FPV+IVGGIYGG+FSPTEAAA CVLYA+LLEF+IF+SLKLPD+YTIAKSTGLITAVVFILV  GNGFSWIISFAQIPQTIL AVG+N+ GP GVLI+I +AFFVACMFVDPIVVILVLTPIFAPAIAA+GLDPV VG+LITLQVAIGSATPPFGCDIFTAIAIFK+PYWEVI+GTPPFIF
Sbjct:   56 PMFILAADIMTRGHSADRLIDMVMSFIGHVKGGLAVSTAASCTLFGAVSGSTQATVVAIGSPLRPKMLKAGYSDSFTLALIINASDIAFLIPPSIGMIIYGVISETSIAELFIAGVGPGLLILVLFSIYCLIYATVNNLPTEEKSTWKQRAKAVQLAVWPLMFPVIIVGGIYGGIFSPTEAAAVCVLYAVLLEFVIFKSLKLPDMYTIAKSTGLITAVVFILVGVGNGFSWIISFAQIPQTILDAVGVNDMGPTGVLISICVAFFVACMFVDPIVVILVLTPIFAPAIAATGLDPVHVGILITLQVAIGSATPPFGCDIFTAIAIFKKPYWEVIKGTPPFIF 397          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14953.2879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9YCN4_9ZZZZ5.290e-22497.08DctM domain-containing protein n=17 Tax=root TaxID... [more]
A0A1K1Y6K4_9GAMM6.900e-20688.27TRAP transporter, DctM subunit n=2 Tax=Marinospiri... [more]
A0A2N7TUV2_9GAMM1.970e-20587.72C4-dicarboxylate ABC transporter permease n=1 Tax=... [more]
UPI000DAE49141.080e-20285.96TRAP transporter large permease n=1 Tax=Halomonas ... [more]
A0A839V4V5_9GAMM1.260e-20185.38Tripartite ATP-independent transporter DctM subuni... [more]
A0A063XYK5_9GAMM1.790e-20184.80TRAP-type C4-dicarboxylate transport system, large... [more]
UPI00124DD1513.600e-20185.38TRAP transporter large permease n=1 Tax=Nitrincola... [more]
UPI0003F780C67.250e-20184.21TRAP transporter large permease n=1 Tax=Marinospir... [more]
UPI000FD72A0B1.030e-20085.38TRAP transporter large permease n=2 Tax=Saccharosp... [more]
A4B9I7_9GAMM3.490e-20084.21TRAP dicarboxylate transporter, DctM subunit n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14953contigE-siliculosus-1a_F_contig14953:3..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size999
Model size1026
Exons1
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.G
EggNOG OGs1MU0F@1224,1RNAM@1236,1XHAI@135619,COG1593@1,COG1593@2
EggNOG free text desc.COG1593 TRAP-type C4-dicarboxylate transport system, large permease component
KEGG Pathwayko02020,map02020
KEGG TC2.A.56.1
KEGG koko:K11690
Seed eggNOG ortholog1118153.MOY_07597
Seed ortholog evalue8.6e-163
Seed ortholog score579.7
Taxonomic scopeBacteria
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.5690882-UTR-E-siliculosus-1a_F_contig14953:2..291622928006.5690882-UTR-E-siliculosus-1a_F_contig14953:2..29Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14953 3..29 +
1696318769.5202081-UTR-E-siliculosus-1a_F_contig14953:2..291696318769.5202081-UTR-E-siliculosus-1a_F_contig14953:2..29Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14953 3..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.584654-CDS-E-siliculosus-1a_F_contig14953:29..10281622928006.584654-CDS-E-siliculosus-1a_F_contig14953:29..1028Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14953 30..1028 +
1696318769.532316-CDS-E-siliculosus-1a_F_contig14953:29..10281696318769.532316-CDS-E-siliculosus-1a_F_contig14953:29..1028Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14953 30..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14953.2879.1prot_E-siliculosus-1a_F_contig14953.2879.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14953 30..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14953.2879.1

>prot_E-siliculosus-1a_F_contig14953.2879.1 ID=prot_E-siliculosus-1a_F_contig14953.2879.1|Name=mRNA_E-siliculosus-1a_F_contig14953.2879.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=333bp
MTRGQSASCLIDMLMTFVGHVKGGLAVSTAVSCTLFGAVSGSTQATVVAV
GSPLRPRMLKAGYKDSFTLALIINSSDIAFLIPPSIGMIIYGVISQTSIA
ELFIAGIGPGLMILLMFSIYSVMYAIINKVPTEPKASWKARAVAVQKALW
PLGFPVLIVGGIYGGVFSPTEAAAACVLYAILLEFIIFRSLKLPDIYTIA
KSTGLITAVVFILVAAGNGFSWIISFAQIPQTILAAVGINEAGPLGVLIA
ISIAFFVACMFVDPIVVILVLTPIFAPAIAASGLDPVLVGVLITLQVAIG
SATPPFGCDIFTAIAIFKRPYWEVIRGTPPFIF
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mRNA from alignment at E-siliculosus-1a_F_contig14953:3..1028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14953.2879.1 ID=mRNA_E-siliculosus-1a_F_contig14953.2879.1|Name=mRNA_E-siliculosus-1a_F_contig14953.2879.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1026bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14953:3..1028+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTTTGTTTATTCTGGCAGCCGATATTATGACGCGCGGGCAGTCGGCGAG CTGCTTGATTGATATGTTGATGACGTTTGTAGGACATGTTAAGGGTGGGC TAGCGGTGAGTACCGCTGTTTCCTGCACGCTATTTGGCGCAGTCTCTGGT TCGACACAAGCAACCGTGGTCGCTGTGGGTTCTCCCTTGCGTCCACGAAT GCTAAAGGCGGGCTATAAAGACTCGTTTACCTTGGCATTGATTATCAATT CGAGCGATATCGCTTTTTTAATTCCGCCAAGTATCGGCATGATTATCTAT GGTGTTATTTCTCAGACCTCGATTGCTGAGTTATTTATTGCCGGTATTGG GCCGGGGCTAATGATTTTATTGATGTTTTCAATTTACAGTGTGATGTATG CGATCATTAATAAGGTGCCCACAGAGCCAAAAGCTTCCTGGAAAGCGCGC GCCGTAGCGGTACAAAAGGCACTTTGGCCATTGGGTTTTCCGGTGCTTAT TGTGGGTGGTATCTATGGCGGTGTCTTTAGCCCCACTGAAGCCGCCGCGG CCTGCGTGCTCTATGCCATTTTGCTCGAGTTCATTATTTTCCGCTCATTG AAATTGCCCGATATATACACGATTGCGAAATCAACCGGCTTGATTACCGC CGTGGTGTTTATTTTAGTGGCAGCGGGCAACGGTTTTTCGTGGATTATCT CGTTTGCACAGATCCCACAAACAATATTGGCGGCCGTCGGGATAAATGAA GCGGGGCCTTTGGGGGTGTTAATCGCTATATCCATCGCCTTCTTTGTTGC CTGTATGTTCGTTGATCCCATCGTAGTGATTTTAGTGCTTACCCCTATCT TTGCGCCGGCTATTGCCGCTTCGGGATTAGACCCTGTGCTGGTGGGGGTA TTGATTACACTGCAAGTTGCGATAGGCTCGGCCACGCCACCGTTTGGCTG CGATATATTTACCGCTATTGCGATTTTCAAGCGACCCTATTGGGAAGTGA TCCGCGGGACGCCGCCGTTCATTTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14953:3..1028+

>mRNA_E-siliculosus-1a_F_contig14953.2879.1 ID=mRNA_E-siliculosus-1a_F_contig14953.2879.1|Name=mRNA_E-siliculosus-1a_F_contig14953.2879.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14953:3..1028+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGCGCGGGCAGTCGGCGAGCTGCTTGATTGATATGTTGATGACGTT
TGTAGGACATGTTAAGGGTGGGCTAGCGGTGAGTACCGCTGTTTCCTGCA
CGCTATTTGGCGCAGTCTCTGGTTCGACACAAGCAACCGTGGTCGCTGTG
GGTTCTCCCTTGCGTCCACGAATGCTAAAGGCGGGCTATAAAGACTCGTT
TACCTTGGCATTGATTATCAATTCGAGCGATATCGCTTTTTTAATTCCGC
CAAGTATCGGCATGATTATCTATGGTGTTATTTCTCAGACCTCGATTGCT
GAGTTATTTATTGCCGGTATTGGGCCGGGGCTAATGATTTTATTGATGTT
TTCAATTTACAGTGTGATGTATGCGATCATTAATAAGGTGCCCACAGAGC
CAAAAGCTTCCTGGAAAGCGCGCGCCGTAGCGGTACAAAAGGCACTTTGG
CCATTGGGTTTTCCGGTGCTTATTGTGGGTGGTATCTATGGCGGTGTCTT
TAGCCCCACTGAAGCCGCCGCGGCCTGCGTGCTCTATGCCATTTTGCTCG
AGTTCATTATTTTCCGCTCATTGAAATTGCCCGATATATACACGATTGCG
AAATCAACCGGCTTGATTACCGCCGTGGTGTTTATTTTAGTGGCAGCGGG
CAACGGTTTTTCGTGGATTATCTCGTTTGCACAGATCCCACAAACAATAT
TGGCGGCCGTCGGGATAAATGAAGCGGGGCCTTTGGGGGTGTTAATCGCT
ATATCCATCGCCTTCTTTGTTGCCTGTATGTTCGTTGATCCCATCGTAGT
GATTTTAGTGCTTACCCCTATCTTTGCGCCGGCTATTGCCGCTTCGGGAT
TAGACCCTGTGCTGGTGGGGGTATTGATTACACTGCAAGTTGCGATAGGC
TCGGCCACGCCACCGTTTGGCTGCGATATATTTACCGCTATTGCGATTTT
CAAGCGACCCTATTGGGAAGTGATCCGCGGGACGCCGCCGTTCATTTTTA
TGACGCGCGGGCAGTCGGCGAGCTGCTTGATTGATATGTTGATGACGTTT
GTAGGACATGTTAAGGGTGGGCTAGCGGTGAGTACCGCTGTTTCCTGCAC
GCTATTTGGCGCAGTCTCTGGTTCGACACAAGCAACCGTGGTCGCTGTGG
GTTCTCCCTTGCGTCCACGAATGCTAAAGGCGGGCTATAAAGACTCGTTT
ACCTTGGCATTGATTATCAATTCGAGCGATATCGCTTTTTTAATTCCGCC
AAGTATCGGCATGATTATCTATGGTGTTATTTCTCAGACCTCGATTGCTG
AGTTATTTATTGCCGGTATTGGGCCGGGGCTAATGATTTTATTGATGTTT
TCAATTTACAGTGTGATGTATGCGATCATTAATAAGGTGCCCACAGAGCC
AAAAGCTTCCTGGAAAGCGCGCGCCGTAGCGGTACAAAAGGCACTTTGGC
CATTGGGTTTTCCGGTGCTTATTGTGGGTGGTATCTATGGCGGTGTCTTT
AGCCCCACTGAAGCCGCCGCGGCCTGCGTGCTCTATGCCATTTTGCTCGA
GTTCATTATTTTCCGCTCATTGAAATTGCCCGATATATACACGATTGCGA
AATCAACCGGCTTGATTACCGCCGTGGTGTTTATTTTAGTGGCAGCGGGC
AACGGTTTTTCGTGGATTATCTCGTTTGCACAGATCCCACAAACAATATT
GGCGGCCGTCGGGATAAATGAAGCGGGGCCTTTGGGGGTGTTAATCGCTA
TATCCATCGCCTTCTTTGTTGCCTGTATGTTCGTTGATCCCATCGTAGTG
ATTTTAGTGCTTACCCCTATCTTTGCGCCGGCTATTGCCGCTTCGGGATT
AGACCCTGTGCTGGTGGGGGTATTGATTACACTGCAAGTTGCGATAGGCT
CGGCCACGCCACCGTTTGGCTGCGATATATTTACCGCTATTGCGATTTTC
AAGCGACCCTATTGGGAAGTGATCCGCGGGACGCCGCCGTTCATTTTT
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