mRNA_E-siliculosus-1a_F_contig1494.2873.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Match: D7FH43_ECTSI (Exocyst complex component, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH43_ECTSI) HSP 1 Score: 1258 bits (3256), Expect = 0.000e+0 Identity = 838/857 (97.78%), Postives = 840/857 (98.02%), Query Frame = 1
Query: 100 MSSGRKDKRWLKSVADPDLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLVETVKPAEKTPAARSNSRSVXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGPQRITREQSSKKSGAAASSGEDAGFRLGPVASSLFSIVSLMLEEGFAAAAALNTMGFPVGVQLASRLVPDVTHFLASYIDSVKDNLVDAIRKDPFVGVSRPLVRPEALCVGTQEEEDQQAKRAQLTSSARILVLELRDILDYALVLLEPPPPEPEAFSAEDAGVSSPGSVEEEPPEAASYYTRDEFLELEPVIVTSLDKLLRTYLKETLACMRARRDELSSNQSVAVVNNLAEIGGSYVPLLAAWCAQLLPEIADEEEVSNLRDLRSEFQRSAQNPLRAREIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASDGIVKAPSGSVAPSGRPSGGGSERRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATASSXXXXXXXXXSGSLLAGDASRDKIPSLKQSLTNRASFSKPSGGASTAAPVTTGRISVTST 2670
MSSGRKDKRWLKSVADPDLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLVETVKPAEKTPAARSNSR+VXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGPQRITREQSSKKSGAAASSGEDAGFRLGPVASSLFSIVSLMLEEGFAAAAALNTMGFPVGVQLASRLVPDVTHFLASYIDSVKDNLVDAIRKDPFVGVS PLVRPEALCVGTQEEEDQQAKRAQLTSSARILVLELRDILDYALVLLEPPPPEPEAFSAEDAGVSSPGSVEEEPPEAASYYTRDEFLELEPVIVTSLDKLLRTYLKETLACMRARRDELSSNQSVAVVNNLAEIGGSYVPLLAAWCAQLLPEIA+EEEVSNLRDLRSEFQRSAQNPLRAREIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASDGIVKAPSGS APSGR RRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT XXXXXXXX SGSL GDASRDKIPSLKQSLTNRASFSKPSGGASTA PVTTGRISVTST
Sbjct: 1 MSSGRKDKRWLKSVADPDLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLVETVKPAEKTPAARSNSRAVXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGPQRITREQSSKKSGAAASSGEDAGFRLGPVASSLFSIVSLMLEEGFAAAAALNTMGFPVGVQLASRLVPDVTHFLASYIDSVKDNLVDAIRKDPFVGVSCPLVRPEALCVGTQEEEDQQAKRAQLTSSARILVLELRDILDYALVLLEPPPPEPEAFSAEDAGVSSPGSVEEEPPEAASYYTRDEFLELEPVIVTSLDKLLRTYLKETLACMRARRDELSSNQSVAVVNNLAEIGGSYVPLLAAWCAQLLPEIANEEEVSNLRDLRSEFQRSAQNPLRAREIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASDGIVKAPSGSAAPSGRXXXXXXXRRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATXXXXXXXXXXXRSGSLPHGDASRDKIPSLKQSLTNRASFSKPSGGASTAVPVTTGRISVTST 856
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Match: A0A835ZCG0_9STRA (Exo84_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG0_9STRA) HSP 1 Score: 434 bits (1115), Expect = 3.200e-133 Identity = 271/612 (44.28%), Postives = 351/612 (57.35%), Query Frame = 1
Query: 151 DLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLVETVKPAEKTPAARSNSRSVXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKS-ARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGPQRITREQSSKKSGAAASSGEDAGFRLGPVASSLFSIVSLMLEEGFAAAAALNTMGFPVGVQLASRLVPDVTHFLASYIDSVKDNLVDAIRKDPFVGVSRPLVRPEALC--VGTQEEEDQQAKRAQLTSSARILVLELRDILD-YALVLLEPPPPEPEAFSAEDAGVSSPGSVEEEPPEAASYYTRDEFLELEPVIVTSLDKLLRTYLKETLACMRARRDE--LSSNQSVAVVNNLAEIGGSYVPLLAAWCAQLLPEI 1968
DL+ FF D FDAGEY K F+E AS A+ R E+LE L+RQTE +LR EVVRNYQ FMHAT +I+SME + L++LL + A TL +F+ + LVE PA K + +N+ XXX GLKLPEWLD+AP ELEELLLERKH+ A LIR+V+ F+AN++NATNLG GV IF + + MAA ++ RL+ EI+ NT T WGFREHK NF LLI LG ++ AA V ERSA+IRRSL +VE TADPL+YV +S TFFGQ++D V+AFLKLFC + HE R+ KTG+S AY QVY G+K CG+APFCRLV+W++ Q+DQYA L+GRQI A+ +G ++ A G + PVA++LF+ VSLMLE+ F AAA LN GFPVGV LASRL FL ++ +D +++A +D PEAL G + DQ L SSA V E R L+ SYY+R F +L+P ++ + + TLA R DE L +++ A G PLLA WC + PE+
Sbjct: 2 DLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQEVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDPASKL--SPTNAEGGAFGLRAGATGRGGDXXXXXXRGGLKLPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAVGLGAHAARAADAALPRTAPPPKSPPPGDPVDPVAATLFATVSLMLEDAFGAAARLNRHGFPVGVALASRLHAHAGAFLEAFARRARDAVLEAASRDALAVHEYRFAPPEALLGPAGGPQWADQTLV-VWLNSSAAAAVCEARSFLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSYYSRAHFADLQPQVLKLVASIASAGASATLAATLRRDDEGLLRQSEARAACEAAIVYGKRVAPLLALWCGGVFPEV 610
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Match: A0A6H5K667_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K667_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.350e-36 Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 1
Query: 1738 AASYYTRDEFLELEPVIVTSLDKLLRTYLKETLACMRARRDELSSNQSVAVVNNLAEIGGSYVPLLAAWCAQLLPEIAD 1974
AASYYTRDEFLELEPVIVTSL+ LLRTYLKETLACMRARR+ELSSNQSV+VV+NLAEIG SYVPLLAAWCAQLLPEIAD
Sbjct: 4 AASYYTRDEFLELEPVIVTSLNMLLRTYLKETLACMRARRNELSSNQSVSVVSNLAEIGVSYVPLLAAWCAQLLPEIAD 82
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Match: A0A6H5J6Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Z2_9PHAE) HSP 1 Score: 126 bits (316), Expect = 7.730e-31 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query: 793 LTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQ 984
LTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQ
Sbjct: 6 LTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQ 69
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Match: A0A7R9UG23_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG23_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.210e-17 Identity = 81/302 (26.82%), Postives = 138/302 (45.70%), Query Frame = 1
Query: 319 AFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLV--ETVKPAEKTPAARSNSRSVXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTL--TVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGP 1212
AFM A E+ +E+ + ++ L L + + L ET E+T S+ + + L+LP WL+ AP ELEE +LER + A LI +VR+F A + + + + + +F+KV A +A RLL E+ N VWGFR + ++ LI+LG E AA F+G R+ RR+L +++V D ++V +L+ F + A F LF TG + ++ AP + + WV+ +++ + ++G ++ A + P
Sbjct: 21 AFMRAGAEVTKVESKVALVRSTLNDAENALNALENLSLDLGETALREEETQLNLRAEDSMNA----------------TANAALRLPRWLEVAPEELEEAILERHSKTAEALIVKVRNFEAQIHDPSAVHDRLREVFEKVRRGAHLLASRLLKEVKTGNAKGSEVWGFRAQEQSYRQLIALGYGEAAAAAFLGNRTHDARRALGVLDVGGDFTAHVQMLTRAFVSVMRAATEEFFSLFA------------TGGNFSH----------PAAP-SQHMAWVDAEVEYFCDILGSKLFATLVTP 283
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Match: A0A4D9D5U3_9STRA (Exo84_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5U3_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.250e-14 Identity = 66/238 (27.73%), Postives = 117/238 (49.16%), Query Frame = 1
Query: 556 RGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISA----ANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKS----TAYYQVYQG--VKDCGTAP-------------FCRLVVWVNQQIDQYAVLMGRQIRAI 1200
RG LP W+ A +L++ ++E + A I ++R A+L + + + +V + +A R++ E+ A AN ++ F + L++L E+E A FFV + ++ R+L E + +PL YV VL+E FFG + DA +F LF S +I G + + ++ + V++ P F RLV+WV +++ Q+AVL+GRQ+R++
Sbjct: 261 RGDDLPVWVAAALEDLDKCIVENQRSVAVNHIVKLRALLASLSPSRASSPHSQDLQGRVTSKGKEIAGRIIRELDALAPGANLSILFDFADMAQQLRFLVALDEAETAVDFFVRNKGGVLARALHSPETSGEPLVYVAVLAERFFGLMADACESFDALFAVSVSEGRSEAITAGGTPITPSPNFEAFTSTDVENQRGGPMSTPGPSVRPPKCFLRLVLWVEEEVRQFAVLVGRQLRSL 498
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Match: W7TYT0_9STRA (Cullin repeat-like-containing domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYT0_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 6.050e-14 Identity = 64/234 (27.35%), Postives = 115/234 (49.15%), Query Frame = 1
Query: 568 LPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISA----ANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKSTAY----YQVYQG--VKDCGTAP-------------FCRLVVWVNQQIDQYAVLMGRQIRAI 1200
LP W+ A +L++ ++E + A I ++R A+L + + + ++V + +A R++ E+ A AN ++ F + L++L E+E A FFV + ++ R+L E + +PL YV VL+E FFG + DA +F LF S +I G + ++ + V++ P F RLV+WV +++ Q+AVL+GRQ+R++
Sbjct: 264 LPAWVAAAMEDLDKCIVENQRSVAVNHIVKLRALLASLSPSRASSPHSQDLQRRVTSKGKEIAGRIVRELDALAPGANLSILFDFADMAQQLRFLVALDEAETAVDFFVRNKGGVLARALHSPETSGEPLVYVAVLAERFFGLMADACESFDALFTVSVSEGRSEAITAGGTPITPPPNFEAFTSTDVENQRGGPMSTPWPSVRPPECFLRLVLWVEEEVRQFAVLLGRQLRSL 497 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1494.2873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1494.2873.1 >prot_E-siliculosus-1a_F_contig1494.2873.1 ID=prot_E-siliculosus-1a_F_contig1494.2873.1|Name=mRNA_E-siliculosus-1a_F_contig1494.2873.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=955bp MSSGRKDKRWLKSVADPDLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVback to top mRNA from alignment at E-siliculosus-1a_F_contig1494:4415..23163+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1494.2873.1 ID=mRNA_E-siliculosus-1a_F_contig1494.2873.1|Name=mRNA_E-siliculosus-1a_F_contig1494.2873.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=18749bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1494:4415..23163+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1494:4415..23163+ >mRNA_E-siliculosus-1a_F_contig1494.2873.1 ID=mRNA_E-siliculosus-1a_F_contig1494.2873.1|Name=mRNA_E-siliculosus-1a_F_contig1494.2873.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5730bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1494:4415..23163+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |