mRNA_E-siliculosus-1a_F_contig14923.2866.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14923.2866.1
Unique NamemRNA_E-siliculosus-1a_F_contig14923.2866.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14923.2866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14923contigE-siliculosus-1a_F_contig14923:407..930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size426
Model size524
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14923.2866.1prot_E-siliculosus-1a_F_contig14923.2866.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14923 432..857 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.0631964-UTR-E-siliculosus-1a_F_contig14923:406..4311622928005.0631964-UTR-E-siliculosus-1a_F_contig14923:406..431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14923 407..431 +
1696318768.697021-UTR-E-siliculosus-1a_F_contig14923:406..4311696318768.697021-UTR-E-siliculosus-1a_F_contig14923:406..431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14923 407..431 +
1622928005.0970025-UTR-E-siliculosus-1a_F_contig14923:857..9301622928005.0970025-UTR-E-siliculosus-1a_F_contig14923:857..930Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14923 858..930 +
1696318768.7125847-UTR-E-siliculosus-1a_F_contig14923:857..9301696318768.7125847-UTR-E-siliculosus-1a_F_contig14923:857..930Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14923 858..930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.08259-CDS-E-siliculosus-1a_F_contig14923:431..8571622928005.08259-CDS-E-siliculosus-1a_F_contig14923:431..857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14923 432..857 +
1696318768.7048712-CDS-E-siliculosus-1a_F_contig14923:431..8571696318768.7048712-CDS-E-siliculosus-1a_F_contig14923:431..857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14923 432..857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14923.2866.1

>prot_E-siliculosus-1a_F_contig14923.2866.1 ID=prot_E-siliculosus-1a_F_contig14923.2866.1|Name=mRNA_E-siliculosus-1a_F_contig14923.2866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp
MFSMGMLNSPTACFLIASGAFSSRRSCAEEQEQAPALRRPRRRASGARTY
MMMSASRALYCCRGSRSGCAPRCVFFVRLAACVPRRQSVELLNRAPATDR
HERLLLPTAPSAFLLGRTPMVKKEDMLIPNLERCGTRHYQF*
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mRNA from alignment at E-siliculosus-1a_F_contig14923:407..930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14923.2866.1 ID=mRNA_E-siliculosus-1a_F_contig14923.2866.1|Name=mRNA_E-siliculosus-1a_F_contig14923.2866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=524bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14923:407..930+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGCCTGCTGTTTTCTGCCGGGTTGATGTTCTCGATGGGTATGTTGAACT
CGCCGACAGCGTGCTTTCTCATCGCGTCCGGCGCGTTCAGTTCCAGGCGG
TCCTGTGCAGAAGAACAAGAACAAGCACCAGCCCTCCGGCGGCCCCGCCG
GAGGGCGTCCGGCGCGAGGACATACATGATGATGTCTGCGAGTCGGGCGC
TGTACTGCTGTAGGGGAAGTCGGTCTGGTTGTGCGCCGCGCTGCGTTTTT
TTTGTCCGCCTGGCAGCGTGCGTGCCGCGTCGTCAGTCAGTTGAACTGTT
GAACCGAGCGCCCGCCACGGATCGCCATGAACGCCTTCTATTGCCCACGG
CTCCCTCTGCCTTTCTCCTGGGCAGAACACCCATGGTCAAAAAGGAAGAC
ATGCTGATTCCGAACTTGGAACGATGTGGAACAAGGCACTATCAATTCTA
GCGTTCATCGATGACATCGAGAAAGAAAAGAAACTGCCGCAAGCGGCGGG
GGGATTCCCAGAACTCAAACCACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14923:407..930+

>mRNA_E-siliculosus-1a_F_contig14923.2866.1 ID=mRNA_E-siliculosus-1a_F_contig14923.2866.1|Name=mRNA_E-siliculosus-1a_F_contig14923.2866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14923:407..930+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCTCGATGGGTATGTTGAACTCGCCGACAGCGTGCTTTCTCATCGC
GTCCGGCGCGTTCAGTTCCAGGCGGTCCTGTGCAGAAGAACAAGAACAAG
CACCAGCCCTCCGGCGGCCCCGCCGGAGGGCGTCCGGCGCGAGGACATAC
ATGATGATGTCTGCGAGTCGGGCGCTGTACTGCTGTAGGGGAAGTCGGTC
TGGTTGTGCGCCGCGCTGCGTTTTTTTTGTCCGCCTGGCAGCGTGCGTGC
CGCGTCGTCAGTCAGTTGAACTGTTGAACCGAGCGCCCGCCACGGATCGC
CATGAACGCCTTCTATTGCCCACGGCTCCCTCTGCCTTTCTCCTGGGCAG
AACACCCATGGTCAAAAAGGAAGACATGCTGATTCCGAACTTGGAACGAT
GTGGAACAAGGCACTATCAATTCTAGATGTTCTCGATGGGTATGTTGAAC
TCGCCGACAGCGTGCTTTCTCATCGCGTCCGGCGCGTTCAGTTCCAGGCG
GTCCTGTGCAGAAGAACAAGAACAAGCACCAGCCCTCCGGCGGCCCCGCC
GGAGGGCGTCCGGCGCGAGGACATACATGATGATGTCTGCGAGTCGGGCG
CTGTACTGCTGTAGGGGAAGTCGGTCTGGTTGTGCGCCGCGCTGCGTTTT
TTTTGTCCGCCTGGCAGCGTGCGTGCCGCGTCGTCAGTCAGTTGAACTGT
TGAACCGAGCGCCCGCCACGGATCGCCATGAACGCCTTCTATTGCCCACG
GCTCCCTCTGCCTTTCTCCTGGGCAGAACACCCATGGTCAAAAAGGAAGA
CATGCTGATTCCGAACTTGGAACGATGTGGAACAAGGCACTATCAATTCT
AG
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