mRNA_E-siliculosus-1a_F_contig149.2856.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig149.2856.1
Unique NamemRNA_E-siliculosus-1a_F_contig149.2856.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: D8LHH9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH9_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 5.210e-145
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 2
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTPTS 613
            GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTPTS
Sbjct:   24 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTPTS 225          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: W6MEY3_9EUCA (Peroxiredoxin6-like protein (Fragment) n=1 Tax=Coenobita clypeatus TaxID=474045 RepID=W6MEY3_9EUCA)

HSP 1 Score: 265 bits (678), Expect = 6.250e-84
Identity = 125/202 (61.88%), Postives = 155/202 (76.73%), Query Frame = 2
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFP--LIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            G IKLH YLG SWG+L SHPAD+TPVCTTELG  AKL     EF KR+VK++AISCD +E H GWI DIKA+     +FP  +IAD DR +A +LGM+ PD  +A G+P+T R V+VI P+K LKL++ YPA+TGRNFDEIIR +DSLQLTA + +ATPADW+ GG CMVLP++SP+DA   FP+H+  +VPSGK YLR TP
Sbjct:    2 GVIKLHSYLGDSWGILFSHPADYTPVCTTELGRVAKL---APEFEKRNVKLMAISCDSVEDHLGWIEDIKAYNNLTGDFPYPIIADPDRDLAVTLGMIDPDEKTASGMPLTARAVFVIGPDKKLKLSILYPATTGRNFDEIIRVVDSLQLTAQKKVATPADWKCGGHCMVLPSISPDDAQNMFPQHQVHKVPSGKEYLRTTP 200          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: C5H3W2_ERISI (Glutathione peroxidase n=1 Tax=Eriocheir sinensis TaxID=95602 RepID=C5H3W2_ERISI)

HSP 1 Score: 259 bits (663), Expect = 2.000e-81
Identity = 121/205 (59.02%), Postives = 160/205 (78.05%), Query Frame = 2
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVN----FPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            +GPIKLH YLG  WG+L SHP+D+TPVCTTELGT AK+  E   F KR+VK++AISCD +E H GWI DI+A+  H+++    +P+IAD DR +A +LGM+ PD  +A GLP+T R V+VI P+K LKL++ YPA+TGRNF+EI+R IDSLQLT  + +ATP++W  G  CMV+P+VSPE+A + FPEHK ++VPSGK YLR+TP
Sbjct:   17 EGPIKLHSYLGDMWGILFSHPSDYTPVCTTELGTVAKMMPE---FTKRNVKVMAISCDSVEDHNGWIKDIQAY--HKLSGPFPYPIIADQDRDLAVTLGMIDPDEKTAAGLPLTARAVFVIGPDKKLKLSILYPATTGRNFNEILRVIDSLQLTKEKKVATPSNWCNGDQCMVVPSVSPEEAKKLFPEHKVIQVPSGKEYLRMTP 216          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: UPI001E672362 (peroxiredoxin-6-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672362)

HSP 1 Score: 255 bits (651), Expect = 1.270e-79
Identity = 121/202 (59.90%), Postives = 153/202 (75.74%), Query Frame = 2
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHT--GHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            G IKLH YLG SWG++ +HPADFTPVCTTELG  AKL  E   F KR+VK+LAISCD +E H GWI DI+A++    E  +P+I D DR +A +LGM+ PD  +AEGLP++ R V++I P+K LKL+L YPA+TGRNF+EI+RAIDS+QLTA + +ATP DW+ G +CMVLP+VS E+A   FPEH    VPSGK Y+R TP
Sbjct:   18 GTIKLHTYLGDSWGIVFAHPADFTPVCTTELGCVAKLVPE---FTKRNVKLLAISCDSVEDHVGWIKDIQAYSELSGEFPYPIIGDKDRDLAVTLGMIDPDEKNAEGLPLSCRAVFLIGPDKRLKLSLLYPATTGRNFNEILRAIDSIQLTAAKKVATPVDWKPGSACMVLPSVSAEEAKSLFPEHTVHNVPSGKEYIRTTP 216          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: A0A2R2YWF5_EUPSU (Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=6819 RepID=A0A2R2YWF5_EUPSU)

HSP 1 Score: 255 bits (651), Expect = 1.450e-79
Identity = 116/203 (57.14%), Postives = 151/203 (74.38%), Query Frame = 2
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFP--LIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            +G I LHDYLG  WG++ SHPAD+TPVCTTELG  AKL  E   F KR+ K+ A+SCD +E H GWI DI+A+   + NFP  ++AD  R +A  LGM+ PD  +A G+P+T R V++I P+K LKL++ YPA+TGRNFDEI+R +DSLQLTA + +ATPADW++G SCMV+P +S E A + FP+HK  +VPSGK YLR TP
Sbjct:   17 KGTIHLHDYLGDKWGIMFSHPADYTPVCTTELGRVAKLTPE---FTKRNCKLQAVSCDSVEDHHGWIKDIQAYNNLDGNFPYPIVADEKRELAVQLGMIDPDEKTASGMPLTARAVFIIGPDKKLKLSILYPATTGRNFDEILRVLDSLQLTAHKKVATPADWKQGSSCMVVPNISKEQAKQMFPQHKVHQVPSGKEYLRTTP 216          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: UPI001CF40163 (peroxiredoxin-6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF40163)

HSP 1 Score: 254 bits (650), Expect = 1.860e-79
Identity = 118/204 (57.84%), Postives = 154/204 (75.49%), Query Frame = 2
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFP--LIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTME-VPSGKGYLRVTP 607
            +G IK ++++G SW +L SHPAD+TPVCTTELG  +++     EF KR+VK+ A+SCD  ESH+GWI DIK H   +  FP  +IAD DR +A  LGM+ PD   A+G+P+T R V++I P+K LKL+L YPA+TGRNFDEI+R +DSLQLTA + +ATPADW+ GG CMVLPTV PE+AA+ FP+  T E +PSGKGY+R TP
Sbjct:   17 EGKIKFYEFIGDSWAILFSHPADYTPVCTTELGRVSEI---APEFAKRNVKLCALSCDSAESHKGWIEDIKHHVKSKAKFPYPIIADEDRDLAVKLGMIDPDEKDAQGMPLTARAVFIIGPDKKLKLSLLYPATTGRNFDEILRVVDSLQLTAEKKVATPADWKSGGDCMVLPTVKPEEAAKLFPKGVTTEDMPSGKGYMRFTP 217          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: UPI0009E4807C (peroxiredoxin-6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4807C)

HSP 1 Score: 254 bits (649), Expect = 2.620e-79
Identity = 121/204 (59.31%), Postives = 153/204 (75.00%), Query Frame = 2
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGH--EVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEH-KTMEVPSGKGYLRVTP 607
            QG I+ H+Y+  SW +L SHPAD+TPVCTTELG  A L  E   F KR VK++A+SCD +ESH+GWI DI   + +  E  +P+IAD  R +A  LGM+ PD   A+GLP+T R V++I P+K LKL+L YPA+TGRNFDEI+R IDSLQLTAT+ +ATPADW+ GG CMVLPTV PED A+ FP+  KT ++PSGKGY+R TP
Sbjct:   17 QGEIQFHEYIKDSWAILFSHPADYTPVCTTELGRVANLLEE---FKKRGVKLIALSCDGVESHKGWIKDIMFESNYNGEFPYPIIADEGRDLAVKLGMIDPDEKDAQGLPLTARAVFIIGPDKRLKLSLLYPATTGRNFDEILRVIDSLQLTATKKVATPADWKAGGDCMVLPTVKPEDVAKLFPKGVKTKDMPSGKGYMRYTP 217          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: A0A6A0GX74_HYAAZ (Thioredoxin peroxidase-like 3 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GX74_HYAAZ)

HSP 1 Score: 254 bits (648), Expect = 3.140e-79
Identity = 119/200 (59.50%), Postives = 149/200 (74.50%), Query Frame = 2
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTG-HEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVT 604
            G IK HD+LG SWG+L SHP D+TPVCTTELG  A L     +F KR  K++A+SCD L+ H GWI DIKA+    E  +P+IAD  R++A  LGM+ PD   A+G+P T R V+V+ P+K LKL++ YPA+TGRNFDEI+RA+DSLQLTAT+ +ATPADW KG +CMVLP+VSP+DA + FPEH    VPSGK YLR T
Sbjct:   18 GKIKFHDWLGESWGILFSHPRDYTPVCTTELGRAAAL---APQFEKRGCKLIALSCDALDDHHGWIEDIKAYNKLSEFPYPIIADDKRALAVQLGMIDPDEQGADGMPYTCRAVFVVGPDKKLKLSMLYPATTGRNFDEILRALDSLQLTATQKVATPADWTKGSACMVLPSVSPDDAKQLFPEHVCHPVPSGKTYLRTT 214          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: M1XMN8_9METZ (Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XMN8_9METZ)

HSP 1 Score: 254 bits (648), Expect = 3.580e-79
Identity = 119/203 (58.62%), Postives = 148/203 (72.91%), Query Frame = 2
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGH--EVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            +G I  H +LG SWG+L SHPADFTPVCTTELG   ++N    EF KR+VK +A+SCDP++ H  WI DI+A++    +  +P+IAD  R +A   GML PD     G+P+T R V++I P+K LKL+L YPASTGRNFDEIIR IDSLQLTA + +ATP +WQ GG CMVLP+V PEDA   FPEH T E+PSGKGY+R TP
Sbjct:   18 KGSISFHSFLGDSWGILFSHPADFTPVCTTELG---RVNQLLAEFEKRNVKPIALSCDPVDKHSDWIKDIQAYSAQSGDWGYPIIADEQRELAVRFGMLDPDEKDKAGMPLTARCVFIIGPDKKLKLSLLYPASTGRNFDEIIRVIDSLQLTAYKKVATPVNWQPGGECMVLPSVKPEDAKTLFPEHYTKELPSGKGYMRFTP 217          
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Match: A0A1W0A4M4_9STRA (Thioredoxin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4M4_9STRA)

HSP 1 Score: 253 bits (647), Expect = 6.610e-79
Identity = 119/202 (58.91%), Postives = 153/202 (75.74%), Query Frame = 2
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPE-HKTMEVPSGKGYLRVTP 607
            QGP+ L  Y    WGLLCSHP D+TP+CTTELG  A+L+   GEF KR VK++ +SC+ + SHQGWI DI+A++GH+VN+P+IAD +R IA+ LGML  D +   GLP+TVR+V+V+ P+  +KL LTYPASTGRNF EI+R IDSLQLT+  S ATP +W KG    ++PTVS EDAA KFP+ ++  E+PSGKGYLR TP
Sbjct:   23 QGPLSLKQYFDGQWGLLCSHPDDYTPICTTELGELARLD-NLGEFSKRHVKVIGLSCNDVNSHQGWIKDIEAYSGHQVNYPIIADKNRVIASELGMLSSDDLDKAGLPLTVRSVFVLGPDLSIKLTLTYPASTGRNFVEILRVIDSLQLTSNYSCATPVNWVKGEKACIVPTVSNEDAAHKFPKGYEIEELPSGKGYLRFTP 223          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig149.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH9_ECTSI5.210e-145100.00Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
W6MEY3_9EUCA6.250e-8461.88Peroxiredoxin6-like protein (Fragment) n=1 Tax=Coe... [more]
C5H3W2_ERISI2.000e-8159.02Glutathione peroxidase n=1 Tax=Eriocheir sinensis ... [more]
UPI001E6723621.270e-7959.90peroxiredoxin-6-like n=1 Tax=Procambarus clarkii T... [more]
A0A2R2YWF5_EUPSU1.450e-7957.14Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=681... [more]
UPI001CF401631.860e-7957.84peroxiredoxin-6-like n=1 Tax=Acropora millepora Ta... [more]
UPI0009E4807C2.620e-7959.31peroxiredoxin-6-like n=1 Tax=Orbicella faveolata T... [more]
A0A6A0GX74_HYAAZ3.140e-7959.50Thioredoxin peroxidase-like 3 n=1 Tax=Hyalella azt... [more]
M1XMN8_9METZ3.580e-7958.62Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliat... [more]
A0A1W0A4M4_9STRA6.610e-7958.91Thioredoxin n=1 Tax=Thraustotheca clavata TaxID=74... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig149contigE-siliculosus-1a_F_contig149:59517..62966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size459
Model size1366
Exons5
Ec32 orthologEc-11_004010.1
Ec32 ortholog descriptionGlutathione peroxidase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelBilateria
COG Functional cat.O
EC1.11.1.15,1.11.1.7
EggNOG OGs38CN4@33154,3BBQ4@33208,3CW2U@33213,COG0450@1,KOG0854@2759
EggNOG free text desc.peroxiredoxin activity
GOsGO:0000302,GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004601,GO:0004602,GO:0004620,GO:0004623,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009636,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016042,GO:0016043,GO:0016192,GO:0016209,GO:0016298,GO:0016491,GO:0016684,GO:0016787,GO:0016788,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0031323,GO:0031325,GO:0031410,GO:0031625,GO:0031974,GO:0031982,GO:0031983,GO:0032060,GO:0032940,GO:0033120,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043484,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045935,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046903,GO:0046983,GO:0047499,GO:0048024,GO:0048026,GO:0048471,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051252,GO:0051254,GO:0051716,GO:0052689,GO:0055114,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0072593,GO:0080090,GO:0097237,GO:0097708,GO:0098754,GO:0098869,GO:0099503,GO:0120031,GO:0120036,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990748
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG koko:K11188
KEGG rclassRC00034
Preferred namePRDX6
Seed eggNOG ortholog7668.SPU_013368-tr
Seed ortholog evalue7.5e-45
Seed ortholog score186.8
Taxonomic scopeMetazoa
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928002.7016547-UTR-E-siliculosus-1a_F_contig149:59516..596441622928002.7016547-UTR-E-siliculosus-1a_F_contig149:59516..59644Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig149 59517..59644 +
1696318768.0071292-UTR-E-siliculosus-1a_F_contig149:59516..596441696318768.0071292-UTR-E-siliculosus-1a_F_contig149:59516..59644Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig149 59517..59644 +
1622928002.7166061-UTR-E-siliculosus-1a_F_contig149:60281..603101622928002.7166061-UTR-E-siliculosus-1a_F_contig149:60281..60310Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig149 60282..60310 +
1696318768.0220697-UTR-E-siliculosus-1a_F_contig149:60281..603101696318768.0220697-UTR-E-siliculosus-1a_F_contig149:60281..60310Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig149 60282..60310 +
1622928002.876224-UTR-E-siliculosus-1a_F_contig149:62216..629661622928002.876224-UTR-E-siliculosus-1a_F_contig149:62216..62966Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig149 62217..62966 +
1696318768.0752747-UTR-E-siliculosus-1a_F_contig149:62216..629661696318768.0752747-UTR-E-siliculosus-1a_F_contig149:62216..62966Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig149 62217..62966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928002.7269893-CDS-E-siliculosus-1a_F_contig149:60310..604231622928002.7269893-CDS-E-siliculosus-1a_F_contig149:60310..60423Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 60311..60423 +
1696318768.0386827-CDS-E-siliculosus-1a_F_contig149:60310..604231696318768.0386827-CDS-E-siliculosus-1a_F_contig149:60310..60423Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 60311..60423 +
1622928002.7700336-CDS-E-siliculosus-1a_F_contig149:60971..611221622928002.7700336-CDS-E-siliculosus-1a_F_contig149:60971..61122Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 60972..61122 +
1696318768.0504282-CDS-E-siliculosus-1a_F_contig149:60971..611221696318768.0504282-CDS-E-siliculosus-1a_F_contig149:60971..61122Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 60972..61122 +
1622928002.7854571-CDS-E-siliculosus-1a_F_contig149:61670..618051622928002.7854571-CDS-E-siliculosus-1a_F_contig149:61670..61805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 61671..61805 +
1696318768.0609303-CDS-E-siliculosus-1a_F_contig149:61670..618051696318768.0609303-CDS-E-siliculosus-1a_F_contig149:61670..61805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 61671..61805 +
1622928002.862921-CDS-E-siliculosus-1a_F_contig149:62156..622161622928002.862921-CDS-E-siliculosus-1a_F_contig149:62156..62216Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 62157..62216 +
1696318768.0681329-CDS-E-siliculosus-1a_F_contig149:62156..622161696318768.0681329-CDS-E-siliculosus-1a_F_contig149:62156..62216Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig149 62157..62216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig149.2856.1prot_E-siliculosus-1a_F_contig149.2856.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig149 60311..62216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig149.2856.1

>prot_E-siliculosus-1a_F_contig149.2856.1 ID=prot_E-siliculosus-1a_F_contig149.2856.1|Name=mRNA_E-siliculosus-1a_F_contig149.2856.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=153bp
MLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDH
MSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTA
TRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP
TS*
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mRNA from alignment at E-siliculosus-1a_F_contig149:59517..62966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig149.2856.1 ID=mRNA_E-siliculosus-1a_F_contig149.2856.1|Name=mRNA_E-siliculosus-1a_F_contig149.2856.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig149:59517..62966+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGGCAGGGCCCCATCAAGCTCCATGACTATCTCGGGTCCTCCTGGGGGC TGCTTTGCTCGCACCCGGCCGACTTCACGCCGGTGTGCACCACCGAGCTT GGGACATGCGCAAAGCTAAACGTGGAAGGTTGGTGTCTACTGCTGCGAAA AGCGTGCTCTGTGGCCCTTGAATATGTACCACACTTGTGCGGGCCGAGCC ACTGCCGTTTCCGTGCATCTCGTGTCATTTTTGGTGGCACTTAGATGATC TCGCCGGTTCATGCGTTCTTGCGTGTTTTTTGGGGGTATCGGTTCACGTG ATTCTCTCGCCGTTGCAACCGATGTCGTCCGTTGTCCGAAGTTGATCTGC TCTCCTCGATTGCCTCGTGCCCTTGTACAGTGCAGAGAAGATTGACCTCG GTCTTGCAACGTTCGAGCAAGGGCCGCACGAAAATGAACGGTTGTTGTCG AAGACCAAATAACGAAACCGTCAGCTTATACGCCCTCCGTTTCCGAAACG AATTTACTCGTTTCGAAGACTACCGTCAAGTGCCTGTACATGTCTGATAA ATCGGGGTGATTTCCATTCGTGAAGCTGTCGATGGCGCTCGCCGCAATGG GACAGCAAAACCTCGCGGGCGGCAACCCCACTGTCAGCGCCACGTCGTCC GCACATGTCTCCAACCGTGCCACTGTTGCCCAATAGTTTCCCCCTGTAGC GCAGCTCAGCCGCAGTTGGTGCGTGTTTCCTGAGCTTTTTTTCCCCCCCG TTTCTTATGTTTCAGGCGGCGAGTTCCCGAAGCGAGACGTGAAGATGTTG GCCATCTCGTGTGATCCGTTGGAGTCGCACCAGGGCTGGATCGGCGACAT CAAGGCACACACCGGCCACGAGGTCAACTTCCCGCTGATTGCGGATGCCG ACCGCAGGTACTAGAAAGAAGAAGAGAAGCACGCTTGCGTATCATACGGT TACGTACCCCCCGCCTCCCACCGTGCTGCAGTGTAGGGCGAACGCTAGAA AAGCACTAAGAAGAATTGTTATCAAGAGAGAGTACGTATGGAAAACCGGT GAGAGGGAGACATGGAACGCGATGGATCACCGGAAAGGCGATAATATGAA AGGAGATGGGAGGAAACTAAAGAGACATAGCTCTCTTCTCAGCGACAACC TCGTTGTTACGTTTGTGCGTGGGGTCCTTCCTCCGGGGCTATAGTGCACA TCGGAGTCTTTTTGATGTCGGTCGGTACTTTCGATGACGACAATGCGCTT CGTGAAATGCTGCGTTGTCAACTGTACTGTTCAACTAGTTGGGGGGGGTC CCTTGTTCACGATTTGCCTCGGTGGCATTGCATTCGCTCTTGAACTTTCA CCGCAACGATACGAGCGTTTTCCACCAAACGGCCGTGGTGGCGCATGGGT GCAACAGCTGTCGATGTGTTTCCCTCTCAACCCGCCACCCTTGAATTGTT TGTAGCATCGCGGCTTCGCTGGGCATGCTGCACCCGGACCACATGAGCGC GGAGGGCCTCCCGATGACGGTTCGCACCGTGTACGTCATCAGCCCCGAGA AGATCCTCAAGCTCGCGCTCACTTACCCGGCTTCCACCGGCAGGAACTTC GACGAGGTTTGTTTTGTCGCAACACCATAGCTTTTGTTCTGAGGTCTGGC GTGGTTGCTACGAGGGGCGGGTGGAGGTTGTATGGGGTGGAAAGGCCGTG GAGGCACCCATAAGTCCGGTGGCATGTGATTGGTGGTGTAGATAGCGTTT GCGACAAAACATGTTTATTGGGGAATGAAGGAGTCTTGCAGTTTTCCTGG GTGCCTTGGAACTTGTTTTTTGTCTTCTGACCGAGAGATGACTACTTCGT ATTATATAGTATGATCAGTTGTAGCAGCAGCCGGAGTGCAACTCTGTGAC AACATTTTTGAACGCGCTTCGATTCGCGGTTAGATTGAGAGCTATACGTA GAGACGTAGAGATGCAAACTATGTTGTCGTCCCTCTTATGTTATCGTCCC TCTTGAGCGTGGGGAGATAGACTGATTTTCCCCTCAGAACTGCTGCAGCA ACAGGTATCTCACACCACTGGGAGATGAAAAAACACGCACCCGTCTGACA GCAGTCAGTCCCCCCCTCCAACGTCGCCAACATTCGGTGCCCCTCTGTAC ATAGATCATTCGGGCGATCGACTCCCTACAGCTCACGGCCACCCGCAGCC TGGCCACCCCAGCCGACTGGCAGAAGGGCGGCAGTTGCATGGTTCTGCCC ACGGTTAGCCCCGAAGATGCGGCTGAAAAGTTCCCCGAGGTATGCGCATA CTGTACTTCGATTTTGTCTTTTTGTACAACGTTACAAAAATCAATACGTT TTCAGGCTGCAATGGGTAGATCACGCCACGTGCAGTATGATGCCATCATC ACTATGGTCGTCCACCCGGACAACTGTTAACAGTAGTAGAGCCGCTGAAG TGCTGTTGTACCAAGCAAGGAACATGCATCGCCGTCATCCGCAGCTGAAC ACAAGTTCCCTGCCAGATGCCACGCAGCTTAAAAGAAATTGCGGCAGCGG TTTAGGGTTCATCTTGCGCGTGGATATTAGTGCCGCGTATTTACCCCCTC CCGCCCCCCCCCCCTCGTGATTCCGCGTGTTTCCCTCCAGCACAAGACGA TGGAAGTGCCCTCGGGCAAAGGGTACCTGCGGGTTACCCCCACGTCGTGA TGGGTTAATCCAGTCCACAAGATCATGCGCCGCGCTGAAAAAGCAACCAA CGACGGTTACTCATCTTGGCTCTTTGGGATGCGAAGTTCTTCATATGGTG TACGTTAGACGGTTGCTCCTACCTTGTGTTCGTGTGCAACTCTGACGCTT CTGTGTAAACAATGGGAGCCGTCGCTGGGAGGAAGGTGGGACTATTGACA TAGATTATGATCTGAGATGGTTGTTGTAGATGTTCAGTATGAGGCGTGTA AGGTTCCGCTAGATATGCCCAGAACATGATCGTATGCTAGCACACGGCAG TAGTGTAGTCCTTCTGGTTTTTGGTGGAAATGAAATCCGTATTATATGTT GCCCACCCTGATGTGGGCCATGTGCCACAAGGCTATATGAAACCTTCGGG GCGCGGCTTTGTAGAGCTTGACCTCACTGTTTTATATTTCCCCTTTCCTC CGTCCTCGGGGGGGGGGCGGGAGTTGTTTTTGGAGGAAGATGAGAACCAA CCCCAGAAGGATCACGAGGTAAACATTCGTGGTTCTTCGTTGTTGTATTA TCTTGGTGGACCTCCTCTTTCGTGGCTTACCCAAAACCCTAAAACCAGGA ACAACAAGCAGTGTGTATGCTTTCATCTAAAAGATAAGAGGTGGTGCGTG CTTGCTTGGCAACTTAAATAATTGCCTTTGCAAACAGAAAAGGTAGCGCG AACATGACAACATGACGGAGCAAGACAATAGATGAACGGGTGCGCGCGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig149:59517..62966+

>mRNA_E-siliculosus-1a_F_contig149.2856.1 ID=mRNA_E-siliculosus-1a_F_contig149.2856.1|Name=mRNA_E-siliculosus-1a_F_contig149.2856.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=918bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig149:59517..62966+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGGCCATCTCGTGTGATCCGTTGGAGTCGCACCAGGGCTGGATCGG
CGACATCAAGGCACACACCGGCCACGAGGTCAACTTCCCGCTGATTGCGG
ATGCCGACCGCAGATGTTGGCCATCTCGTGTGATCCGTTGGAGTCGCACC
AGGGCTGGATCGGCGACATCAAGGCACACACCGGCCACGAGGTCAACTTC
CCGCTGATTGCGGATGCCGACCGCAGCATCGCGGCTTCGCTGGGCATGCT
GCACCCGGACCACATGAGCGCGGAGGGCCTCCCGATGACGGTTCGCACCG
TGTACGTCATCAGCCCCGAGAAGATCCTCAAGCTCGCGCTCACTTACCCG
GCTTCCACCGGCAGGAACTTCGACGAGCATCGCGGCTTCGCTGGGCATGC
TGCACCCGGACCACATGAGCGCGGAGGGCCTCCCGATGACGGTTCGCACC
GTGTACGTCATCAGCCCCGAGAAGATCCTCAAGCTCGCGCTCACTTACCC
GGCTTCCACCGGCAGGAACTTCGACGAGATCATTCGGGCGATCGACTCCC
TACAGCTCACGGCCACCCGCAGCCTGGCCACCCCAGCCGACTGGCAGAAG
GGCGGCAGTTGCATGGTTCTGCCCACGGTTAGCCCCGAAGATGCGGCTGA
AAAGTTCCCCGAGATCATTCGGGCGATCGACTCCCTACAGCTCACGGCCA
CCCGCAGCCTGGCCACCCCAGCCGACTGGCAGAAGGGCGGCAGTTGCATG
GTTCTGCCCACGGTTAGCCCCGAAGATGCGGCTGAAAAGTTCCCCGAGCA
CAAGACGATGGAAGTGCCCTCGGGCAAAGGGTACCTGCGGGTTACCCCCA
CGTCGTGACACAAGACGATGGAAGTGCCCTCGGGCAAAGGGTACCTGCGG
GTTACCCCCACGTCGTGA
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