mRNA_E-siliculosus-1a_F_contig14894.2845.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14894.2845.1
Unique NamemRNA_E-siliculosus-1a_F_contig14894.2845.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: A0A5S3PHJ3_9FLAO (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PHJ3_9FLAO)

HSP 1 Score: 369 bits (948), Expect = 7.190e-127
Identity = 186/213 (87.32%), Postives = 198/213 (92.96%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYLSS 639
            GYM GHAAREYKAG+RMLCGV M EGM+END+FP+PIITPATKAEQGDHDEDISKEDILKRGIVS +DY VLEKYT+ALFQRG+EIA  RGLIL DTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGY+ RQDRGEAQKQLSKEFVRQWLIAN+FQGLEGQ VP+M+DEYIE+VSERYIELYENITGETF KADISNIQERIE NV  YL S
Sbjct:  105 GYMSGHAAREYKAGQRMLCGVPMPEGMQENDKFPEPIITPATKAEQGDHDEDISKEDILKRGIVSVEDYGVLEKYTKALFQRGTEIAAERGLILVDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYEVRQDRGEAQKQLSKEFVRQWLIANNFQGLEGQNVPYMSDEYIESVSERYIELYENITGETFEKADISNIQERIENNVLEYLKS 317
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BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: UPI00006B499E (phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) TaxID=313603 RepID=UPI00006B499E)

HSP 1 Score: 369 bits (946), Expect = 1.450e-126
Identity = 185/211 (87.68%), Postives = 196/211 (92.89%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYL 633
            GYM GHAAREYKAG+R+LCGV M EGMKEND+FP+PIITPATKAE GDHDEDIS+EDILKRGIVS+ DY VLEKYT+ALF RGSEIA SRGLIL DTKYEFGKT DGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLI+N FQGLEGQT+P MTDEYIETVS+RYIELYENITGETF+KADISNIQERIE NV  YL
Sbjct:  104 GYMSGHAAREYKAGRRLLCGVPMPEGMKENDKFPEPIITPATKAEMGDHDEDISREDILKRGIVSEADYVVLEKYTRALFARGSEIAASRGLILVDTKYEFGKTMDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLISNGFQGLEGQTLPEMTDEYIETVSDRYIELYENITGETFIKADISNIQERIEQNVLDYL 314
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: A0A5D0G6T2_9FLAO (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Formosa maritima TaxID=2592046 RepID=A0A5D0G6T2_9FLAO)

HSP 1 Score: 367 bits (942), Expect = 5.880e-126
Identity = 184/213 (86.38%), Postives = 196/213 (92.02%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYLSS 639
            GY+ GHAAREYKAGKRMLCG++M EGMKEND FP+ IITPATKAE GDHDEDIS+EDI+K GIVS+ DY VLE YT+ LFQRGSEIA SRGLIL DTKYEFGKTK+GKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIAN+FQGLEGQTVP MTDEYIETVSERYIELYENITGETFVKAD+SNIQ RIE NV  YL+S
Sbjct:  105 GYLSGHAAREYKAGKRMLCGISMPEGMKENDAFPQHIITPATKAEMGDHDEDISREDIIKNGIVSEADYVVLEDYTRKLFQRGSEIAASRGLILVDTKYEFGKTKEGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANNFQGLEGQTVPEMTDEYIETVSERYIELYENITGETFVKADVSNIQNRIEQNVLGYLNS 317
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: A0A1H3XN04_9FLAO (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Bizionia TaxID=283785 RepID=A0A1H3XN04_9FLAO)

HSP 1 Score: 366 bits (939), Expect = 1.740e-125
Identity = 181/213 (84.98%), Postives = 198/213 (92.96%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYLSS 639
            GYM GHAAREYKAGKRMLCGVAM EGMKEND+FP+PIITPATKAE GDHDEDIS+EDI+K+GIVS+ DY VLE YT+ LFQRG+EIA SRGLIL DTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQD+GEAQKQLSKEFVRQWLIANDFQGLEGQ+VP M+D+YI +VSERYIELYENI GETFVKAD+SNIQERI+ NV A+L +
Sbjct:  105 GYMSGHAAREYKAGKRMLCGVAMPEGMKENDKFPEPIITPATKAEMGDHDEDISREDIIKKGIVSEADYLVLEDYTRKLFQRGTEIAASRGLILVDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDKGEAQKQLSKEFVRQWLIANDFQGLEGQSVPEMSDDYIASVSERYIELYENIMGETFVKADVSNIQERIQNNVEAFLKT 317
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BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: A0A3D9H270_9FLAO (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=8 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A3D9H270_9FLAO)

HSP 1 Score: 364 bits (934), Expect = 1.070e-124
Identity = 182/211 (86.26%), Postives = 195/211 (92.42%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYL 633
            GYM GHAAREYK GKRMLCGVAM EGMKEND+FP PIITPATKAE GDHDEDIS+EDILKRGIVS+ DY VLE YT+ LFQRG+EIA  RGLIL DTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQ++GEAQKQLSKEFVRQWLIANDFQGLEGQTVP M+D+YIETVSERYIELYENITG+TF+KAD+S+IQ RIE NV AYL
Sbjct:  103 GYMSGHAAREYKLGKRMLCGVAMPEGMKENDKFPNPIITPATKAEMGDHDEDISREDILKRGIVSQDDYIVLEDYTRKLFQRGTEIAADRGLILVDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQNKGEAQKQLSKEFVRQWLIANDFQGLEGQTVPVMSDDYIETVSERYIELYENITGDTFIKADVSDIQSRIETNVLAYL 313
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BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: UPI00177BDAA3 (phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Euzebyella saccharophila TaxID=679664 RepID=UPI00177BDAA3)

HSP 1 Score: 363 bits (932), Expect = 1.890e-124
Identity = 182/212 (85.85%), Postives = 195/212 (91.98%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYLS 636
            GYM GHAAREYKAGKR+LCGV M EGMKEND FP+PIITPATKAE+GDHDEDISKE+ILKRGIVSK+DYEVLEKYT++LFQRG+EIA  RGLIL DTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGY+ERQ +GE QKQLSKEFVRQWLI N FQGLEGQ+VP MTD YIETVS+RYIEL+ENITG TF KADISNIQERIE NV AYLS
Sbjct:  104 GYMSGHAAREYKAGKRLLCGVPMPEGMKENDAFPEPIITPATKAEKGDHDEDISKEEILKRGIVSKEDYEVLEKYTRSLFQRGTEIAAERGLILVDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYKERQQKGEGQKQLSKEFVRQWLIQNGFQGLEGQSVPEMTDSYIETVSDRYIELFENITGTTFEKADISNIQERIEKNVLAYLS 315
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: A0A0C5W9X0_9FLAO (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=129 Tax=Bacteroidetes TaxID=976 RepID=A0A0C5W9X0_9FLAO)

HSP 1 Score: 363 bits (931), Expect = 2.500e-124
Identity = 181/211 (85.78%), Postives = 194/211 (91.94%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYL 633
            GYM GHAAREYKAGKRMLCGVAM EGMKEND FP+PIITPATKAE GDHDEDIS+EDILKRGIVS+ DY VLE YT+ LFQRG+EIA SRGLIL DTKYEFGKTKDGKIVLIDEIHTPDSSRYFYA+GYQERQD+GEAQKQLSKEFVRQWLIAN+FQGLEGQ VP MTD+YI +VSERYIELYENITGE F+KAD+SNIQ+RIE NV  YL
Sbjct:  103 GYMSGHAAREYKAGKRMLCGVAMPEGMKENDAFPEPIITPATKAEMGDHDEDISREDILKRGIVSEADYLVLEDYTRKLFQRGTEIAASRGLILVDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYAEGYQERQDKGEAQKQLSKEFVRQWLIANNFQGLEGQVVPEMTDDYITSVSERYIELYENITGEKFIKADVSNIQQRIEANVLEYL 313
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: A0A1G7B806_9FLAO (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Pricia antarctica TaxID=641691 RepID=A0A1G7B806_9FLAO)

HSP 1 Score: 363 bits (931), Expect = 2.590e-124
Identity = 182/211 (86.26%), Postives = 194/211 (91.94%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYL 633
            GYM GHAAREYKAGKRMLCG+AM EGM+ENDQFP+PIITPATKAE GDHDEDIS+EDIL R IVSK++Y VLEKYT+ALFQRG+EIA +RGLIL DTKYEFGKTK G+IVLIDEIHTPDSSRYFYADGYQERQDRGE QKQLSKEFVRQWLI NDFQGLEGQ VP M+D YIETVSERYIELYENITGETF+KADISNIQERIE NV  YL
Sbjct:  104 GYMSGHAAREYKAGKRMLCGIAMPEGMQENDQFPEPIITPATKAEHGDHDEDISREDILIRKIVSKEEYAVLEKYTRALFQRGTEIAAARGLILVDTKYEFGKTKGGEIVLIDEIHTPDSSRYFYADGYQERQDRGEPQKQLSKEFVRQWLIQNDFQGLEGQNVPEMSDAYIETVSERYIELYENITGETFIKADISNIQERIEKNVLGYL 314
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: A0A1Y0MDP6_9FLAO (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=5 Tax=Winogradskyella TaxID=286104 RepID=A0A1Y0MDP6_9FLAO)

HSP 1 Score: 363 bits (931), Expect = 2.970e-124
Identity = 178/213 (83.57%), Postives = 197/213 (92.49%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYLSS 639
            GYM GHAAREYK GKRMLCGVAM +GMKEND+FP+PIITPATKAE GDHDEDIS+EDILK GIVS++DY VLE YT+ LFQRG+EIA  RGLIL DTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGY++RQ RGEAQKQLSKEFVRQWLI+N+FQGLEGQTVP+M+DEYIETVSERYIELYENITG+TF+KAD+SNIQ+RIE NV  YL +
Sbjct:  104 GYMSGHAAREYKLGKRMLCGVAMPDGMKENDKFPEPIITPATKAEMGDHDEDISREDILKGGIVSEEDYVVLEDYTRKLFQRGTEIAAKRGLILVDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYEDRQSRGEAQKQLSKEFVRQWLISNNFQGLEGQTVPYMSDEYIETVSERYIELYENITGQTFIKADVSNIQKRIENNVNTYLET 316
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Match: UPI0020069DB4 (phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI0020069DB4)

HSP 1 Score: 361 bits (927), Expect = 1.090e-123
Identity = 179/213 (84.04%), Postives = 196/213 (92.02%), Query Frame = 1 
Query:    1 GYMCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDEDISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLIANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQERIEGNVRAYLSS 639
            GY+ GHAAREYKAGKR LCGV+M EGMKEND+FP PIITPATKAE+GDHDEDISKEDILKRGIVSK+DYE+LE YT  LFQRG+EIA SRGLIL DTKYEFGKTKDGKIVLIDEIHTPDSSRYFY  GYQERQ++GEAQKQLSKEFVRQWLIAN+FQGLEGQTVP M+D+YIETVSERYIELYENI GE FVKAD+SNI+ERI+ NV  +L+S
Sbjct:  103 GYLSGHAAREYKAGKRTLCGVSMPEGMKENDKFPSPIITPATKAEKGDHDEDISKEDILKRGIVSKEDYEILEDYTHKLFQRGTEIAASRGLILVDTKYEFGKTKDGKIVLIDEIHTPDSSRYFYEKGYQERQNKGEAQKQLSKEFVRQWLIANNFQGLEGQTVPEMSDDYIETVSERYIELYENIMGEKFVKADVSNIEERIKSNVEHFLAS 315
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14894.2845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S3PHJ3_9FLAO7.190e-12787.32Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
UPI00006B499E1.450e-12687.68phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A5D0G6T2_9FLAO5.880e-12686.38Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
A0A1H3XN04_9FLAO1.740e-12584.98Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
A0A3D9H270_9FLAO1.070e-12486.26Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
UPI00177BDAA31.890e-12485.85phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A0C5W9X0_9FLAO2.500e-12485.78Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
A0A1G7B806_9FLAO2.590e-12486.26Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
A0A1Y0MDP6_9FLAO2.970e-12483.57Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
UPI0020069DB41.090e-12384.04phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14894contigE-siliculosus-1a_F_contig14894:3..644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size636
Model size642
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko03000
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
COG Functional cat.F
EC6.3.2.6,6.3.4.13
EggNOG OGs1HWM5@117743,4NF1Z@976,COG0152@1,COG0152@2
EggNOG free text desc.Phosphoribosylaminoimidazolesuccinocarboxamide synthase
GOsGO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
KEGG ModuleM00048
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko02026,map00230,map01100,map01110,map01130,map02026
KEGG ReactionR04144,R04591
KEGG koko:K01923,ko:K03566,ko:K13713
KEGG rclassRC00064,RC00090,RC00162,RC00166
Preferred namepurC
Seed eggNOG ortholog1178825.ALIH01000005_gene194
Seed ortholog evalue4.3e-99
Seed ortholog score367.5
Taxonomic scopeBacteria
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928001.0152047-UTR-E-siliculosus-1a_F_contig14894:2..81622928001.0152047-UTR-E-siliculosus-1a_F_contig14894:2..8Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14894 3..8 +
1696318767.439722-UTR-E-siliculosus-1a_F_contig14894:2..81696318767.439722-UTR-E-siliculosus-1a_F_contig14894:2..8Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14894 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928001.029916-CDS-E-siliculosus-1a_F_contig14894:8..6441622928001.029916-CDS-E-siliculosus-1a_F_contig14894:8..644Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14894 9..644 +
1696318767.4526486-CDS-E-siliculosus-1a_F_contig14894:8..6441696318767.4526486-CDS-E-siliculosus-1a_F_contig14894:8..644Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14894 9..644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14894.2845.1prot_E-siliculosus-1a_F_contig14894.2845.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14894 9..644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14894.2845.1

>prot_E-siliculosus-1a_F_contig14894.2845.1 ID=prot_E-siliculosus-1a_F_contig14894.2845.1|Name=mRNA_E-siliculosus-1a_F_contig14894.2845.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=212bp
MCGHAAREYKAGKRMLCGVAMAEGMKENDQFPKPIITPATKAEQGDHDED
ISKEDILKRGIVSKKDYEVLEKYTQALFQRGSEIAESRGLILGDTKYEFG
KTKDGKIVLIDEIHTPDSSRYFYADGYQERQDRGEAQKQLSKEFVRQWLI
ANDFQGLEGQTVPHMTDEYIETVSERYIELYENITGETFVKADISNIQER
IEGNVRAYLSS*
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mRNA from alignment at E-siliculosus-1a_F_contig14894:3..644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14894.2845.1 ID=mRNA_E-siliculosus-1a_F_contig14894.2845.1|Name=mRNA_E-siliculosus-1a_F_contig14894.2845.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14894:3..644+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTACATGTGTGGTCATGCAGCTCGAGAGTATAAAGCTGGAAAAAGAAT
GCTTTGCGGTGTCGCCATGGCTGAAGGGATGAAAGAGAATGATCAATTTC
CAAAACCAATTATAACGCCCGCTACAAAGGCGGAACAGGGAGATCATGAC
GAGGATATTTCTAAAGAAGATATTTTAAAAAGAGGCATTGTTTCTAAAAA
GGACTATGAGGTCTTGGAAAAATATACGCAAGCCTTATTTCAAAGAGGTT
CAGAAATAGCTGAGTCTCGAGGTTTAATATTGGGCGATACGAAATATGAA
TTTGGTAAAACCAAAGATGGAAAAATTGTATTGATCGATGAGATTCATAC
TCCAGATTCTTCACGTTATTTTTATGCAGATGGCTATCAAGAACGCCAAG
ATAGGGGAGAAGCGCAAAAACAGCTTTCTAAAGAATTCGTGCGCCAATGG
CTTATTGCGAATGACTTTCAAGGTTTAGAAGGGCAAACCGTACCTCACAT
GACAGATGAATATATTGAAACTGTTTCAGAACGGTATATTGAATTGTATG
AGAATATTACTGGAGAAACTTTTGTAAAAGCTGATATTTCCAACATTCAA
GAGCGGATAGAAGGAAATGTACGAGCATATTTAAGTAGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14894:3..644+

>mRNA_E-siliculosus-1a_F_contig14894.2845.1 ID=mRNA_E-siliculosus-1a_F_contig14894.2845.1|Name=mRNA_E-siliculosus-1a_F_contig14894.2845.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14894:3..644+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTGGTCATGCAGCTCGAGAGTATAAAGCTGGAAAAAGAATGCTTTG
CGGTGTCGCCATGGCTGAAGGGATGAAAGAGAATGATCAATTTCCAAAAC
CAATTATAACGCCCGCTACAAAGGCGGAACAGGGAGATCATGACGAGGAT
ATTTCTAAAGAAGATATTTTAAAAAGAGGCATTGTTTCTAAAAAGGACTA
TGAGGTCTTGGAAAAATATACGCAAGCCTTATTTCAAAGAGGTTCAGAAA
TAGCTGAGTCTCGAGGTTTAATATTGGGCGATACGAAATATGAATTTGGT
AAAACCAAAGATGGAAAAATTGTATTGATCGATGAGATTCATACTCCAGA
TTCTTCACGTTATTTTTATGCAGATGGCTATCAAGAACGCCAAGATAGGG
GAGAAGCGCAAAAACAGCTTTCTAAAGAATTCGTGCGCCAATGGCTTATT
GCGAATGACTTTCAAGGTTTAGAAGGGCAAACCGTACCTCACATGACAGA
TGAATATATTGAAACTGTTTCAGAACGGTATATTGAATTGTATGAGAATA
TTACTGGAGAAACTTTTGTAAAAGCTGATATTTCCAACATTCAAGAGCGG
ATAGAAGGAAATGTACGAGCATATTTAAGTAGTTGAATGTGTGGTCATGC
AGCTCGAGAGTATAAAGCTGGAAAAAGAATGCTTTGCGGTGTCGCCATGG
CTGAAGGGATGAAAGAGAATGATCAATTTCCAAAACCAATTATAACGCCC
GCTACAAAGGCGGAACAGGGAGATCATGACGAGGATATTTCTAAAGAAGA
TATTTTAAAAAGAGGCATTGTTTCTAAAAAGGACTATGAGGTCTTGGAAA
AATATACGCAAGCCTTATTTCAAAGAGGTTCAGAAATAGCTGAGTCTCGA
GGTTTAATATTGGGCGATACGAAATATGAATTTGGTAAAACCAAAGATGG
AAAAATTGTATTGATCGATGAGATTCATACTCCAGATTCTTCACGTTATT
TTTATGCAGATGGCTATCAAGAACGCCAAGATAGGGGAGAAGCGCAAAAA
CAGCTTTCTAAAGAATTCGTGCGCCAATGGCTTATTGCGAATGACTTTCA
AGGTTTAGAAGGGCAAACCGTACCTCACATGACAGATGAATATATTGAAA
CTGTTTCAGAACGGTATATTGAATTGTATGAGAATATTACTGGAGAAACT
TTTGTAAAAGCTGATATTTCCAACATTCAAGAGCGGATAGAAGGAAATGT
ACGAGCATATTTAAGTAGTTGA
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