mRNA_E-siliculosus-1a_F_contig1489.2844.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1489.2844.1
Unique NamemRNA_E-siliculosus-1a_F_contig1489.2844.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 2.530e-53
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQY DRQTLREKLLYAISANAGFELT
Sbjct: 1305 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYEDRQTLREKLLYAISANAGFELT 1395
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: A0A7S2G4K7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4K7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.510e-36
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEG--RLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            QWFW+ +   +P++QG FLKFVTS  R PLLGFE + PPIC+Q+VP G++G  RLPS+ATCMNLLKLP Y     LREKLLYAISANAGFE++
Sbjct:   89 QWFWQVLRELTPQQQGDFLKFVTSSPRQPLLGFEYMQPPICIQKVPLGEDGPSRLPSAATCMNLLKLPDYPTCDILREKLLYAISANAGFEMS 181
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: A0A835YYA3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.950e-36
Identity = 64/91 (70.33%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    4 WFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEG-RLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            WFW+ I +F+P +Q  FLKFVTSCSR PLLGF+ L+PP+C+Q+V  G+ G +LPSSATCMNLLKLP+Y  R+TLREKLLYAISA AGFELT
Sbjct:  356 WFWDIIANFTPAQQALFLKFVTSCSRQPLLGFKHLSPPMCIQQVESGERGNKLPSSATCMNLLKLPRYDSRETLREKLLYAISAGAGFELT 446
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: A0A7R9Y9Y8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.110e-35
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    7 FWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            FW+ ++ F+P E   FL+F+TSCSR PLLGF  LNP IC+Q+VP    G+LPS+ATCMNLLKLPQY D++TLR KLLYAIS+NAGF+LT
Sbjct:  297 FWQCVDEFTPREHADFLRFITSCSRQPLLGFSSLNPKICIQKVPHEPYGKLPSAATCMNLLKLPQYDDKETLRSKLLYAISSNAGFDLT 385
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: W7TQY7_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQY7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.500e-35
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 WFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEG--RLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            WFWEA+ S++P+EQ  FL FVTSCSR PLLGF+ LNPP+C+QRVP   EG  RLPSSATCMNLLKLP Y   + LREKLLYAI+A AGFEL+
Sbjct: 1196 WFWEALRSYTPDEQAAFLMFVTSCSRQPLLGFQHLNPPVCIQRVPLTTEGGERLPSSATCMNLLKLPAYPTPEMLREKLLYAITAGAGFELS 1287
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: A0A3F2RBK9_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBK9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.890e-32
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            QWFWE +  F+PE++   LKF+TSCSR PLLGF RL P IC+ +V   D+ RLPSSATCMNLLKLP Y++++ +R+KLLYAI +NAGF+L+
Sbjct:  807 QWFWEIVNEFAPEDRAALLKFITSCSRQPLLGFSRLAPQICIHQVRVEDDDRLPSSATCMNLLKLPAYSNKEAMRKKLLYAIRSNAGFDLS 897
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: A0A2P2I0I0_9CRUS (HECT-type E3 ubiquitin transferase n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I0I0_9CRUS)

HSP 1 Score: 126 bits (316), Expect = 9.540e-32
Identity = 58/89 (65.17%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    7 FWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            FW+ +E F+ +++GQ LKFVTSCSRPPLLGF+ L PP C+Q  P G + RLPS+ATCMNLLKLP+Y+D  TL+EKLLY+I++NAGFEL+
Sbjct: 1276 FWQVVEQFNEKQRGQLLKFVTSCSRPPLLGFKDLCPPFCIQ--PSGSDQRLPSAATCMNLLKLPEYSDPITLKEKLLYSITSNAGFELS 1362
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: W4FG87_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FG87_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.280e-31
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            QWFWE +   SP E+G  L+F+TSCSR PLLGF+ LNP IC+Q+V   D+ RLPSSATCMNLLKLP Y+ +Q +R KL+YAI A AGFEL+
Sbjct:  807 QWFWEILTDMSPLERGDLLRFITSCSRQPLLGFKHLNPLICIQQVRTTDDDRLPSSATCMNLLKLPTYSTKQIMRAKLVYAIQAKAGFELS 897
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BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: A0A8J8WDZ8_CHIOP (HECT-type E3 ubiquitin transferase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J8WDZ8_CHIOP)

HSP 1 Score: 118 bits (296), Expect = 1.790e-31
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            Q FW+ +  FS  ++ Q LKFVTSCSRPPLLGF+ L P  C+Q  P G E RLP+++TCMNLLKLP+Y D  TLR+KLLYAI++ +GFEL+
Sbjct:  126 QAFWQVLREFSETQKRQLLKFVTSCSRPPLLGFKELQPAFCIQ--PSGSEDRLPTASTCMNLLKLPEYKDEHTLRDKLLYAITSGSGFELS 214
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Match: A0A7S1U0R8_9STRA (HECT-type E3 ubiquitin transferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0R8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.350e-31
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT 273
            Q FW  IE  SP+EQ  FL+F+TSCSR PLLGF  + P I +  VPE   GRLPS+ATCMNLLKLP+YAD  TL+EKL YAISANAGF+L+
Sbjct:  703 QAFWRTIEELSPQEQADFLRFITSCSRQPLLGFRSIYPKIAIHMVPEEPPGRLPSAATCMNLLKLPRYADVATLKEKLRYAISANAGFDLS 793
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1489.2844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM0_ECTSI2.530e-5398.90HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A7S2G4K7_9STRA1.510e-3665.59HECT-type E3 ubiquitin transferase n=1 Tax=Florenc... [more]
A0A835YYA3_9STRA3.950e-3670.33HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7R9Y9Y8_9STRA1.110e-3566.29HECT-type E3 ubiquitin transferase n=1 Tax=Pinguio... [more]
W7TQY7_9STRA5.500e-3570.65HECT-type E3 ubiquitin transferase n=3 Tax=Monodop... [more]
A0A3F2RBK9_9STRA6.890e-3261.54HECT-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]
A0A2P2I0I0_9CRUS9.540e-3265.17HECT-type E3 ubiquitin transferase n=2 Tax=Hironde... [more]
W4FG87_9STRA1.280e-3163.74HECT-type E3 ubiquitin transferase n=3 Tax=Aphanom... [more]
A0A8J8WDZ8_CHIOP1.790e-3160.44HECT-type E3 ubiquitin transferase n=1 Tax=Chionoe... [more]
A0A7S1U0R8_9STRA2.350e-3165.93HECT-type E3 ubiquitin transferase n=2 Tax=Phaeomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1489contigE-siliculosus-1a_F_contig1489:30940..31770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size276
Model size276
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC2.3.2.26
EggNOG OGsCOG5021@1,KOG0942@2759
EggNOG free text desc.ubiquitin-protein transferase activity
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
KEGG Pathwayko04120,map04120
KEGG koko:K10589
Seed eggNOG ortholog2880.D7FKM0
Seed ortholog evalue9.1e-46
Seed ortholog score189.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.5240812-CDS-E-siliculosus-1a_F_contig1489:30939..310231622928000.5240812-CDS-E-siliculosus-1a_F_contig1489:30939..31023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1489 30940..31023 -
1696318767.4143624-CDS-E-siliculosus-1a_F_contig1489:30939..310231696318767.4143624-CDS-E-siliculosus-1a_F_contig1489:30939..31023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1489 30940..31023 -
1622928000.5354202-CDS-E-siliculosus-1a_F_contig1489:31578..317701622928000.5354202-CDS-E-siliculosus-1a_F_contig1489:31578..31770Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1489 31579..31770 -
1696318767.4265273-CDS-E-siliculosus-1a_F_contig1489:31578..317701696318767.4265273-CDS-E-siliculosus-1a_F_contig1489:31578..31770Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1489 31579..31770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1489.2844.1prot_E-siliculosus-1a_F_contig1489.2844.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1489 30940..31770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1489.2844.1

>prot_E-siliculosus-1a_F_contig1489.2844.1 ID=prot_E-siliculosus-1a_F_contig1489.2844.1|Name=mRNA_E-siliculosus-1a_F_contig1489.2844.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=92bp
QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDE
GRLPSSATCMNLLKLPQYADRQTLREKLLYAISANAGFELT*
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mRNA from alignment at E-siliculosus-1a_F_contig1489:30940..31770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1489.2844.1 ID=mRNA_E-siliculosus-1a_F_contig1489.2844.1|Name=mRNA_E-siliculosus-1a_F_contig1489.2844.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=831bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1489:30940..31770- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTGGTTCTGGGAAGCGATCGAGTCGTTCAGCCCCGAAGAGCAGGGGCA
GTTTCTCAAGTTCGTCACGTCCTGCTCGAGGCCGCCGCTGCTGGGCTTCG
AGCGACTCAACCCCCCGATCTGTCTGCAGAGGGTACCCGAGGGAGACGAA
GGGAGGCTGCCATCAAGCGCAACGTGCATGAACCTGCTCAAGGTGACTAT
TTGATTGCAAGGGTTAGGTCGGCACGGGTGGAAGGCAGGCCTCATTTTTG
TTTGTATGCGGTTGTCGATTATTTCTGGGGGTGGAAGGCAAGCCCCGCGT
TTTTTGTTTTTGCGGTTGTCGATTGTTTCTGGTAAGCGCGTTTCGAGAAG
AGGGGGAACGTTAGCTGCGTGGATCCGGCGAGCGATGCTCGTATGGGGGG
CGCGAACAGAGCATACAATGGGACAAGGAGGAGAGAGGGAGCGCCCATCC
GTGCATGCATGGAACTGGGTACAAGTGGGCATGAGGCAGCAGAGTTGAGC
GTGTATTCGCGGACGCGACGAAGGTGGAGAGTGTCTCGGTTAGGGCTGTT
CATGTCCAGAATCGGGGCCCTTTTGCGTGCAAGGATTGGGGACCTTTCGA
GTGCAGAATTGTTTCCCATTTTGCCTCTTTTTTCATTTTCGTGGTCGATG
CTCAACCCACCTTTCGACCCTGTGCTCAACCCACCTTTCTCTTCTCTTTC
CCCGCTTTTTGCTCTCGTTTTTTTTCATGTTTGTTTTTCACCGGCAGTTG
CCCCAGTACGCGGACCGGCAGACGTTGAGGGAGAAGCTGCTCTACGCTAT
CAGCGCCAACGCTGGTTTTGAGCTCACGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1489:30940..31770-

>mRNA_E-siliculosus-1a_F_contig1489.2844.1 ID=mRNA_E-siliculosus-1a_F_contig1489.2844.1|Name=mRNA_E-siliculosus-1a_F_contig1489.2844.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1489:30940..31770- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTGGTTCTGGGAAGCGATCGAGTCGTTCAGCCCCGAAGAGCAGGGGCA
GTTTCTCAAGTTCGTCACGTCCTGCTCGAGGCCGCCGCTGCTGGGCTTCG
AGCGACTCAACCCCCCGATCTGTCTGCAGAGGGTACCCGAGGGAGACGAA
GGGAGGCTGCCATCAAGCGCAACGTGCATGAACCTGCTCAAGCAGTGGTT
CTGGGAAGCGATCGAGTCGTTCAGCCCCGAAGAGCAGGGGCAGTTTCTCA
AGTTCGTCACGTCCTGCTCGAGGCCGCCGCTGCTGGGCTTCGAGCGACTC
AACCCCCCGATCTGTCTGCAGAGGGTACCCGAGGGAGACGAAGGGAGGCT
GCCATCAAGCGCAACGTGCATGAACCTGCTCAAGTTGCCCCAGTACGCGG
ACCGGCAGACGTTGAGGGAGAAGCTGCTCTACGCTATCAGCGCCAACGCT
GGTTTTGAGCTCACGTAATTGCCCCAGTACGCGGACCGGCAGACGTTGAG
GGAGAAGCTGCTCTACGCTATCAGCGCCAACGCTGGTTTTGAGCTCACGT
AA
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