mRNA_E-siliculosus-1a_F_contig1488.2837.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1488.2837.1
Unique NamemRNA_E-siliculosus-1a_F_contig1488.2837.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: D8LTN2_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN2_ECTSI)

HSP 1 Score: 560 bits (1442), Expect = 5.740e-201
Identity = 272/297 (91.58%), Postives = 279/297 (93.94%), Query Frame = 1
Query:    1 MNVGPLLKRKQQWEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAALFFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERKFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPSGSRLGRPLLSSCQELWCGARPPSLLPDMTECVNTDNAAGGTDDKKHD 891
            MNVG L KR+QQWE WQGNANFFAGGRI+VGSHCRALAFSATILLFTA LFFTFISLPATTYGGWAFFSTVSVCLFVGCI+SLASTAMMDPGIIPRRTLALWNSLDPASP +AERK CVTCQLARPPRAKHCK CNNCVMEFDHHCPFTGNCIGARNYRAFMAFIS+VTIS FFACALSVLHIVAPRADNVGPVLL + ARIPGSQFFPHLLALWTAVV VLVGGLL FHIFLVAKGQTTNEYLRREAPSGSRLGRP LSSC ELWCGARPPSLL DMTE VNTDN+AGGTDD  HD
Sbjct:    1 MNVGSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTDNSAGGTDDTNHD 297          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 5.500e-89
Identity = 146/289 (50.52%), Postives = 192/289 (66.44%), Query Frame = 1
Query:    7 VGPLLKRKQQWEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAALFFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAER-KFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPSGSRLGRPLLSSCQELWCGARPPSLLPDMTECVNTDNAAGG 870
            + P    K++W+ W+GN  FF  GRIM+G H R L  +  +L  T  LFF FI LP+  YG W+F + V+ CL  GC VSL  ++ +DPGIIPRR  +     D     + ++  +C+TC + RPPR KHCK CNNCV+ FDHHCP+TGNC+GARNYRAFMAFI +VTIS+   CA+SV+H V  R  +VGP+ LT    +PGS+    +L +WTA++TVLVG LLCFH++L+AKGQTTNEYLR E   G+   R    +C+ELWCG +P S+L DM+E        GG
Sbjct:  519 ISPGGSPKKRWQRWRGNNKFFCEGRIMLGVHYRQLMTTTMLLFLTWLLFFVFI-LPS--YGRWSF-AMVAACLCTGCFVSLVFSSFLDPGIIPRRAAS--GLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVT-RTGHVGPMYLTDSVNLPGSRLVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPASMLADMSEFSTGHTVHGG 800          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: D7FZN5_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN5_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 9.870e-79
Identity = 127/266 (47.74%), Postives = 173/266 (65.04%), Query Frame = 1
Query:   28 KQQWEYWQGNANFFAGGRIMVGSHCRALAFSATI---LLFTAALFFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAER-KFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPSGSRLGRPLLSSCQELWCGARP 813
            K++W+ W+GN  FF  GR       R      ++   +   AAL ++       +YG W+F + V+ CL  GC VSL  ++ +DPGIIPRR  +     D     + ++  +C+TC + RPPR KHCK CNNCV+ FDHHCP+TGNC+GARNYR+FMAFI ++TIS+   CA+SV+H V  R  +VGP+ LT    +PGS+F   +L LWTA++TVLVG LLCFH++L+AKGQTTNEYLR E   G+   R    +C+ELWCG +P
Sbjct:  174 KKRWQRWRGNNKFFCEGRFFFRGGGRGTQGGGSLGSGVGGVAALAWSECCCSLPSYGRWSF-ALVAACLCTGCFVSLVFSSFLDPGIIPRRAAS--GLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRSFMAFIILITISSSLVCAMSVVHTVT-RTGHVGPMYLTDSVNLPGSRFVSPVLGLWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 435          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: A0A6H5LMK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMK7_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.950e-76
Identity = 131/218 (60.09%), Postives = 136/218 (62.39%), Query Frame = 1
Query:  160 FISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERKFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPSGSRLGRPLLSSCQELWCGARP 813
            F SLPATTYG  AFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERKFC +CQLARPPRAK+CK                                                                      GSQF PHLLALWTAVV +LVGGLLCFH+FLV K QTTN YLRREAPSGSRLGRP L+SC ELW GARP
Sbjct:   16 FFSLPATTYGVQAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERKFCGSCQLARPPRAKYCK----------------------------------------------------------------------GSQFVPHLLALWTAVVMILVGGLLCFHVFLVTKSQTTNLYLRREAPSGSRLGRPFLASCHELWSGARP 163          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: A0A835YZ83_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ83_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.810e-65
Identity = 116/282 (41.13%), Postives = 170/282 (60.28%), Query Frame = 1
Query:   16 LLKRKQQWEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAALFFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLA-LWNSLDPASPGIAERKFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPSGSRLGRPLLSSCQELWCGARPPSLLPDMTECVNTDN 858
            +   ++ W+ W+GNA F   G++M+G HC  L  + +++L T  LF  F+   A  Y GW +   V   + V C+V+LA TA+ +PGIIP +  +     +  ++ G  +  +C+TC + RPPRAKHC+ CN CV  FDHHCP+ GNCIG RNYR+F+ F+ ++         LS +H +  R  NVGP  LTS++ +PGS++    L +W  +VT +VGGLL  H++L+ +GQTTNE+L+ E P   R GR ++  C  LWC   PPSLLP   E    D+
Sbjct:   41 VTTERKWWQQWRGNARFLCDGKLMLGVHCDQLWVTGSLILGTWLLFLVFV---APNYTGW-WCVGVGAAMLVLCLVTLAETAVTEPGIIPPQPRSDAAEGMSASTRG--KLNYCITCHIVRPPRAKHCRHCNVCVRRFDHHCPWIGNCIGHRNYRSFLRFLIVLAXXXXXXXXLSAIHALT-RLGNVGPEDLTSQSGVPGSEYVSPFLGVWALLVTAIVGGLLLLHMYLLFQGQTTNEFLKGE-PVHVR-GR-VMRKCLLLWCERLPPSLLPPFDEYPTQDD 312          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: A0A812WJG5_SYMMI (Palmitoyltransferase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WJG5_SYMMI)

HSP 1 Score: 177 bits (450), Expect = 1.170e-49
Identity = 111/283 (39.22%), Postives = 154/283 (54.42%), Query Frame = 1
Query:   28 KQQWEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAALFFT----FISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAER-KFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVA-PRADNVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPSGSRLGRPLLSSCQELWCGARPPSLLPDMTECVNTDN 858
            K +++ W+G   F  GGRIM+G+H   L  S T+L+ T +LF       + +P   Y        + V L VG +  L  TA+ +PGIIPRR  +    L+  S    ++ ++C TC++ RPPRAKHC++C+NCV  FDHHCP+TG CIG RNY  F  FI++ T+SA FAC+ S   IV      N  P LL     +        L+  +T +V VLVG LL FH+FL+ + QTTNE+LR   PS S        +  +L   + P S L  M E    D+
Sbjct:   83 KFRYQLWEGKNKFLCGGRIMMGAHSNHLLLSITLLVVTYSLFLLGVVPLLHMPILFY--------IGVGLAVGTLTFLLLTALTEPGIIPRRPPS--KLLESMSEDARQKLQYCHTCRIVRPPRAKHCRYCDNCVEVFDHHCPWTGTCIGVRNYAYFCVFITLATVSAAFACSTSAYLIVQWAEGRNHEPRLLMYIRDVVAP-----LVCAFTLLVFVLVGSLLAFHLFLIGRQQTTNEFLRGVRPSHSDYKNSTTGNVVKLCNTSIPDSKLLPMWEKCQADD 350          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: A0A7S3UWP6_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWP6_HETAK)

HSP 1 Score: 170 bits (430), Expect = 9.010e-47
Identity = 89/210 (42.38%), Postives = 116/210 (55.24%), Query Frame = 1
Query:  223 LFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAER-KFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRAD---NVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPSGSRLGRPLLSSCQELWCGARPPSLLPDMTE 840
            L    +  L  TA+ DPGIIPR   +    ++   P + E+  +C TC + RPPR KHC+ CNNC+  FDHHCP+TGNCIG RNYR F  F+  +T S+ +   +S  ++     D        +     +I G QF   LL LWT +VT LVG LL FHI L+ +GQTTNEYLR E   G      + ++C  LWC   P S L  M E
Sbjct:    9 LMAASVAFLLVTALRDPGIIPRHPPS--QLVESMPPEMKEKMNYCPTCHIVRPPRTKHCRHCNNCIQTFDHHCPWTGNCIGRRNYRFFYLFLMSITASSAYVLVMSANYLTRHLTDIDSKYFDAIFKDEWKIKGGQFIAPLLILWTLLVTTLVGALLVFHIILLGRGQTTNEYLRGEKNRGDIPHGNIFTNCGNLWCHDMPESRLLPMWE 216          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: F0Y087_AURAN (Palmitoyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y087_AURAN)

HSP 1 Score: 154 bits (388), Expect = 6.240e-41
Identity = 91/244 (37.30%), Postives = 128/244 (52.46%), Query Frame = 1
Query:   10 GPLLKRKQQWEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAALFFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERKFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRRE 741
            G      +++E W GN  FF GGR+M+G  C  L  +A ++  T A  F F++ P   +        ++V     C V LA+ A  DPGI+PR   +   S  P         +C TCQ+ RPPRAKHC++C+NCV  FDHHCP+ G C+GARNYRAF+ F+      A + C+ +  ++V         V   S     G      +   W+AVV + V  L+ FH++L+   QTTNEYLR E
Sbjct:   20 GKARSSFKRYEQWPGNNFFFCGGRLMLGVDCDRLLATALLIATTWAGHF-FVTWPNLDFDERCGAGGIAVL----CFVCLAAAATRDPGIVPRLPRSDRLSGLPCETQY-RMNWCQTCQILRPPRAKHCRYCDNCVRVFDHHCPWLGTCVGARNYRAFVLFLVWTLAGALYVCSRAARYLV-----RCSTVHACSAYVDFGRPIVAGISVAWSAVVALPVATLIAFHLYLMGHDQTTNEYLRDE 252          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: A0A7R9UDC7_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 8.790e-40
Identity = 93/248 (37.50%), Postives = 133/248 (53.63%), Query Frame = 1
Query:    7 VGPLLKRKQQWEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAALFFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERK-FCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRARIPGSQFFPHLLAL----WTAVVTVLVGGLLCFHIFLVAKGQTTNEYLR 735
            V  L   K+ +E W+G  +F   GRIM+G+    L  +  ++L T  +F   I +P       A    +S  LF   +V+L  TA+ DPGI+PRR  +      P    + ER  +C TC + +P R KHC+ C+NCV EFDHHCP+ GNCIGARNYR F+ FI    ++  F  ++S+   ++         L+      PG+     +LAL    WT ++T LVG L  FH  L+  GQTTNEY++
Sbjct:  107 VSTLDMSKKHFEQWKGRNSFLLRGRIMLGAMAHQLGITLVLMLITWGIFLCLI-VPLLRN---AVLVVLSFMLFTTQLVALLCTALTDPGILPRRPPSAVVESMPMQ--MKERMHYCPTCHIIKPHRTKHCRICDNCVQEFDHHCPWVGNCIGARNYRFFLLFIISTVLACVFVLSVSLYAFLSGTGG-----LIVQVQDDPGADTVLRVLALVLVFWTFLLTALVGALTFFHCSLMCMGQTTNEYVK 343          
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Match: A0A6A7G8Q1_9CRUS (Palmitoyltransferase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8Q1_9CRUS)

HSP 1 Score: 148 bits (374), Expect = 2.960e-39
Identity = 87/235 (37.02%), Postives = 125/235 (53.19%), Query Frame = 1
Query:   37 WEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAALFFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERKFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSR-ARIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRR 738
            W+ W GN  F   GRIM+GS    L  +  +L     +F  F+      Y      + V   LF  C+V L   A+ DPGI+PR  +   +   P        ++C TC+L RPPRAKHCK+C+NCV +FDHHCP+ G C+G RNYR F+ F+  V +++ F  A SV  +V    ++       +R A    S      L ++TA V + V GL  +H+ L+ +GQTTNE +R+
Sbjct:   19 WKQWPGNNIFLCHGRIMLGSDVSFLGVTVVLLTGPFVIFILFVGFEIH-YS----LAIVGAVLFAICLVFLTQAALTDPGILPRSNIPRPDPHQPHQITARGFRYCSTCKLYRPPRAKHCKYCDNCVRQFDHHCPWVGTCVGLRNYRFFVYFVFSVCLTSGFVFATSVAVLVLNTTNSDADGHWINRFADAITSNPASLALVIFTAFVFLSVLGLASYHVNLILQGQTTNENMRQ 248          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN2_ECTSI5.740e-20191.58Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KNK6_9PHAE5.500e-8950.52Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FZN5_ECTSI9.870e-7947.74Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5LMK7_9PHAE2.950e-7660.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZ83_9STRA1.810e-6541.13Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A812WJG5_SYMMI1.170e-4939.22Palmitoyltransferase n=1 Tax=Symbiodinium microadr... [more]
A0A7S3UWP6_HETAK9.010e-4742.38Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
F0Y087_AURAN6.240e-4137.30Palmitoyltransferase n=1 Tax=Aureococcus anophagef... [more]
A0A7R9UDC7_9STRA8.790e-4037.50Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6A7G8Q1_9CRUS2.960e-3937.02Palmitoyltransferase n=1 Tax=Hirondellea gigas Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1488contigE-siliculosus-1a_F_contig1488:9296..12657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size891
Model size891
Exons7
Ec32 orthologEc-28_003460.1
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Hectar predicted targeting categorysignal anchor
BRITEko00000,ko00001,ko01000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.Z
EC2.3.1.225
EggNOG OGsCOG5273@1,KOG1311@2759
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
KEGG Pathwayko04391,map04391
KEGG TC9.B.37.1,9.B.37.3
KEGG koko:K16675,ko:K20030,ko:K20032
Seed eggNOG ortholog2880.D8LTN2
Seed ortholog evalue3.1e-156
Seed ortholog score557.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927997.5211694-CDS-E-siliculosus-1a_F_contig1488:9295..93711622927997.5211694-CDS-E-siliculosus-1a_F_contig1488:9295..9371Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 9296..9371 +
1696318766.9253411-CDS-E-siliculosus-1a_F_contig1488:9295..93711696318766.9253411-CDS-E-siliculosus-1a_F_contig1488:9295..9371Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 9296..9371 +
1622927997.5321093-CDS-E-siliculosus-1a_F_contig1488:9545..96361622927997.5321093-CDS-E-siliculosus-1a_F_contig1488:9545..9636Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 9546..9636 +
1696318766.9428082-CDS-E-siliculosus-1a_F_contig1488:9545..96361696318766.9428082-CDS-E-siliculosus-1a_F_contig1488:9545..9636Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 9546..9636 +
1622927997.5452702-CDS-E-siliculosus-1a_F_contig1488:9995..101021622927997.5452702-CDS-E-siliculosus-1a_F_contig1488:9995..10102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 9996..10102 +
1696318766.9563842-CDS-E-siliculosus-1a_F_contig1488:9995..101021696318766.9563842-CDS-E-siliculosus-1a_F_contig1488:9995..10102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 9996..10102 +
1622927997.5616972-CDS-E-siliculosus-1a_F_contig1488:11063..112321622927997.5616972-CDS-E-siliculosus-1a_F_contig1488:11063..11232Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 11064..11232 +
1696318766.9647639-CDS-E-siliculosus-1a_F_contig1488:11063..112321696318766.9647639-CDS-E-siliculosus-1a_F_contig1488:11063..11232Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 11064..11232 +
1622927997.5760565-CDS-E-siliculosus-1a_F_contig1488:11510..116751622927997.5760565-CDS-E-siliculosus-1a_F_contig1488:11510..11675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 11511..11675 +
1696318766.9729395-CDS-E-siliculosus-1a_F_contig1488:11510..116751696318766.9729395-CDS-E-siliculosus-1a_F_contig1488:11510..11675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 11511..11675 +
1622927997.5879986-CDS-E-siliculosus-1a_F_contig1488:11925..121351622927997.5879986-CDS-E-siliculosus-1a_F_contig1488:11925..12135Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 11926..12135 +
1696318766.9811146-CDS-E-siliculosus-1a_F_contig1488:11925..121351696318766.9811146-CDS-E-siliculosus-1a_F_contig1488:11925..12135Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 11926..12135 +
1622927997.6045346-CDS-E-siliculosus-1a_F_contig1488:12584..126571622927997.6045346-CDS-E-siliculosus-1a_F_contig1488:12584..12657Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 12585..12657 +
1696318766.989723-CDS-E-siliculosus-1a_F_contig1488:12584..126571696318766.989723-CDS-E-siliculosus-1a_F_contig1488:12584..12657Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 12585..12657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1488.2837.1prot_E-siliculosus-1a_F_contig1488.2837.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1488 9296..12657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1488.2837.1

>prot_E-siliculosus-1a_F_contig1488.2837.1 ID=prot_E-siliculosus-1a_F_contig1488.2837.1|Name=mRNA_E-siliculosus-1a_F_contig1488.2837.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=297bp
MNVGPLLKRKQQWEYWQGNANFFAGGRIMVGSHCRALAFSATILLFTAAL
FFTFISLPATTYGGWAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLA
LWNSLDPASPGIAERKFCVTCQLARPPRAKHCKWCNNCVMEFDHHCPFTG
NCIGARNYRAFMAFISMVTISAFFACALSVLHIVAPRADNVGPVLLTSRA
RIPGSQFFPHLLALWTAVVTVLVGGLLCFHIFLVAKGQTTNEYLRREAPS
GSRLGRPLLSSCQELWCGARPPSLLPDMTECVNTDNAAGGTDDKKHD
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1488:9296..12657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1488.2837.1 ID=mRNA_E-siliculosus-1a_F_contig1488.2837.1|Name=mRNA_E-siliculosus-1a_F_contig1488.2837.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3362bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1488:9296..12657+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACGTGGGACCTCTCCTCAAGCGAAAACAGCAATGGGAGTACTGGCA AGGGAATGCCAACTTCTTCGCAGGGGGTGAGCAACTTAGGGCTGCAGTAA CACGATGTTTATAATCGACCATCGCGAGCATCGAGGCTGAATGAAGAACA ACCTTCGAGATGTGAACAGTTTAGGCTACGATTGTTCTTCGTTTTCCCCT TGATACGATAACGTATCTTTACGCAATCACCTGGGTGGATTCTGGCTCAG GACGAATTATGGTTGGATCGCACTGCCGAGCCCTGGCATTCAGCGCGACA ATTCTTCTCTTCACGGCGGCGTTGTTCTTCACTTTCATCAGGTAAGCGAA GGACAAGTCAGAGCTAAGATGGCGTACACTGCCCGGGGTGTACCCATGGC TCGAAGTACGGGTTGAACAAAATCCTTTTTTGCAGTTGCCGGAGGGGTCA TCCACTAGTCCTGGGCCCATAGACAATTGGTGTCGTGCTCGCTCGCCTTC ATCAATATGTATCGGTTTCTTATTACTGCTGCATGTTCTTCGAGCAAAGT TCCAGATGCTCGCCCACAAAGGTATCACGTTGGAATGATCGCAGCAAACT GTTCCACGTCGATGCTTGAAATGTGCGTGACTTGAGAGCTAGGCGCCCGA AGATGAACGGTAGACATCGATCCACCCACTCTTCCTCTTGATTTTTTCAG CCTTCCTGCTACGACGTACGGGGGATGGGCCTTCTTCTCCACGGTTTCGG TCTGCCTGTTCGTGGGGTGCATCGTCTCGCTCGCTTCTACGGCGATGATG GACCCTGGTGAGCAAACAAATGATTTTAAGTATGTATGATAGGCCGAGGC GATCGAGAAAGGATCGCAACTCCCGAACGCCCACGGACGACGATTCTGTT TTTCCTCGTTGGTGTCGGCGAAGAGATGTGTGATGCTGGTGGCAGAATAT GCGAATCGAATCCCGTCACCCACCAACAAATAGTGGCAACCACCAAGAAC GCGAAAGGACCAAAGCAACGGGAATTCGTATTTTTTCTTGGAAATTCTGA TGACATGGCGGACATGGGGCACTCATGAACATATGCGTAGAAGACTGAGA CGAGGAAACTTGATTCACCGCCTGCCGTCGTCCGGGTTCCGGTTCCCCCG AAAATGGCTCTTTCATAATTGGTCACATCTCCTTGATGTCTACCGAGGAC GACGCCTTCTTGTTGGATCTCACATTCCGTTGCTCTGTGACGTCATTTCG ACCCAACCTATTCTCGTTTTCGCCGAGGAACCTGCTTGTGCTCTGCAGCA TCTTCCAATGTTTAAGTTCTTCCTCTCAACCTGCCGAACCTACGGGGATG TTTGGCTTGACGCTCTTCGCTGTTCAACGAGGTCGTTCGGTTGCGATATC GACTCCCTCACGTTTGGGATCTCAGAAGATTATTTTGAGCTCTTTTCGTG ACACGACTCTTGTCGGTGTGTCTTTCAATATTCCACCTTGCCTGGAACGA CCTGCGTGTTTTACTGTCATCTATTTTATTGAACGTCGCTCGAGGTCTCT ACCTGCCCTACAACCTCTTCCCTAACTCAAGATCTCCGACCCGGGGTCAG ACAGAAAAAGGGTCCCGACCCCCATCCTTTGAAATGCCCTCACGAAAAAA AAAGCTTTTCATACCCGGGGTTTCTCTATCCCCCCTCCCAGGAGGTCACG ATTGCAAGTGTGTGTATAGCATCACATATATCCCTTACTCCCCACCGCGG CTTCGTTTTCCTTGGCAGGGATCATTCCTCGACGAACGCTGGCGTTGTGG AACTCGTTGGACCCGGCCTCTCCTGGCATTGCCGAGCGAAAGTTCTGTGT CACGTGCCAGCTCGCGCGTCCCCCGAGGGCCAAGCACTGCAAGTGGTGCA ATAACTGCGTCATGGAATTTGATCACCACTGCCCATTGTAAGTCATTTCG CAGGGTAGTTTGCATATTTACATCGCAGAAAACACAGAGGTATTATGATG GATTGAGACTGTATTACTAATATTAGAGAAGCCGATGTTTAGTATGTGCA ACACCCCAACCCCCTTTCAAGTACTCGTGGATGGTTTTGTGGCACCCGCA CTTGTTCGGTCGCACGAATACATTTTTGGAGTGGTTGCATCGCCGATCTC GATCACTGCAGAAGTGAACGCGCTGCCCTACATGACTTTGTCTTGTTGCT ACTCGTTCCTTCTAGCACGGGCAACTGCATCGGCGCACGCAACTATCGCG CGTTCATGGCCTTCATTTCTATGGTTACCATCAGCGCGTTCTTCGCCTGC GCGTTGAGCGTGCTGCACATCGTCGCCCCCCGAGCTGACAACGTCGGTCC GGTCCTTCTCACGAGCCGGGCCAGAATCCCGTGAGATTGACTGTTGTCGT GCTTGCTTGCAAATCCCTCGGTGTTGTCCAGCTCCACTCGCACTATGTTT GTTTAGGGTCTCACAAGTGGTTAATACTATTCGCGGTAGTGGAATCAACA CGAGCCGGAAACAAGGCCGGCAGGATTAACGTGTCGTGGAGCTGAAGGAA CCTTCGTGTTTGAGTCAGCATTTCATGATACATATCCTTCACTCTACCTC CTGCTTGTCCTGCTTCCCGCTTGTTCGCAGGGGCAGCCAATTCTTCCCCC ACCTGTTGGCTCTATGGACAGCTGTGGTTACGGTCCTCGTGGGGGGGTTG CTATGTTTCCACATCTTCCTTGTGGCGAAGGGCCAAACAACCAACGAGTA TCTCAGACGCGAGGCGCCAAGCGGAAGTCGCTTGGGTCGACCCCTCTTGT CTAGCTGCCAAGAATTATGGTGCGGGGCACGGCCACCGAGGTGAGTACAT GCGTGGAAAGAGAACAATGGTCGTCCTTGGGAAGTATGGGCATGGAGAAG ACGGGGGGATATGCGGGAAAGGGAAAGGGTGTGCCGGAAACGGCTCACAG AGACAACGTCAGGATCCAATAAACGTATAGAATTGCCACAGAAAACACCC AGGCCACGAATACAGGGGTGGGTGTACAGCATTCTGAAACCGCGTAGACT AGAATGCGTACGTACTTTGGGAGTGCCATCCCAATACTTCTGAACGTTGC TGCCGATCGGTCATGTATGTCATTCCCTGACCGACCGCTTACCCTGCGCG AGAAATTTCCGCCCGGGGTCGCCGAATTCGTTTGTTCTGGATCTTCCCAT ATTCGCTGTGCCGTTCCCCTCTTTGCTGTCTCTCGCGTTTCGAAATCATG TGCATTATTCCATCAAATGACCGTTGGACGGACAATCAGCCTGCTGCCAG ACATGACGGAGTGCGTCAACACCGACAACGCCGCTGGTGGCACAGATGAC AAAAAGCATGAC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1488:9296..12657+

>mRNA_E-siliculosus-1a_F_contig1488.2837.1 ID=mRNA_E-siliculosus-1a_F_contig1488.2837.1|Name=mRNA_E-siliculosus-1a_F_contig1488.2837.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1488:9296..12657+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACGTGGGACCTCTCCTCAAGCGAAAACAGCAATGGGAGTACTGGCA
AGGGAATGCCAACTTCTTCGCAGGGGATGAACGTGGGACCTCTCCTCAAG
CGAAAACAGCAATGGGAGTACTGGCAAGGGAATGCCAACTTCTTCGCAGG
GGGACGAATTATGGTTGGATCGCACTGCCGAGCCCTGGCATTCAGCGCGA
CAATTCTTCTCTTCACGGCGGCGTTGTTCTTCACTTTCATCAGGACGAAT
TATGGTTGGATCGCACTGCCGAGCCCTGGCATTCAGCGCGACAATTCTTC
TCTTCACGGCGGCGTTGTTCTTCACTTTCATCAGCCTTCCTGCTACGACG
TACGGGGGATGGGCCTTCTTCTCCACGGTTTCGGTCTGCCTGTTCGTGGG
GTGCATCGTCTCGCTCGCTTCTACGGCGATGATGGACCCTGCCTTCCTGC
TACGACGTACGGGGGATGGGCCTTCTTCTCCACGGTTTCGGTCTGCCTGT
TCGTGGGGTGCATCGTCTCGCTCGCTTCTACGGCGATGATGGACCCTGGG
ATCATTCCTCGACGAACGCTGGCGTTGTGGAACTCGTTGGACCCGGCCTC
TCCTGGCATTGCCGAGCGAAAGTTCTGTGTCACGTGCCAGCTCGCGCGTC
CCCCGAGGGCCAAGCACTGCAAGTGGTGCAATAACTGCGTCATGGAATTT
GATCACCACTGCCCATTGGATCATTCCTCGACGAACGCTGGCGTTGTGGA
ACTCGTTGGACCCGGCCTCTCCTGGCATTGCCGAGCGAAAGTTCTGTGTC
ACGTGCCAGCTCGCGCGTCCCCCGAGGGCCAAGCACTGCAAGTGGTGCAA
TAACTGCGTCATGGAATTTGATCACCACTGCCCATTCACGGGCAACTGCA
TCGGCGCACGCAACTATCGCGCGTTCATGGCCTTCATTTCTATGGTTACC
ATCAGCGCGTTCTTCGCCTGCGCGTTGAGCGTGCTGCACATCGTCGCCCC
CCGAGCTGACAACGTCGGTCCGGTCCTTCTCACGAGCCGGGCCAGAATCC
CCACGGGCAACTGCATCGGCGCACGCAACTATCGCGCGTTCATGGCCTTC
ATTTCTATGGTTACCATCAGCGCGTTCTTCGCCTGCGCGTTGAGCGTGCT
GCACATCGTCGCCCCCCGAGCTGACAACGTCGGTCCGGTCCTTCTCACGA
GCCGGGCCAGAATCCCGGGCAGCCAATTCTTCCCCCACCTGTTGGCTCTA
TGGACAGCTGTGGTTACGGTCCTCGTGGGGGGGTTGCTATGTTTCCACAT
CTTCCTTGTGGCGAAGGGCCAAACAACCAACGAGTATCTCAGACGCGAGG
CGCCAAGCGGAAGTCGCTTGGGTCGACCCCTCTTGTCTAGCTGCCAAGAA
TTATGGTGCGGGGCACGGCCACCGAGGGGCAGCCAATTCTTCCCCCACCT
GTTGGCTCTATGGACAGCTGTGGTTACGGTCCTCGTGGGGGGGTTGCTAT
GTTTCCACATCTTCCTTGTGGCGAAGGGCCAAACAACCAACGAGTATCTC
AGACGCGAGGCGCCAAGCGGAAGTCGCTTGGGTCGACCCCTCTTGTCTAG
CTGCCAAGAATTATGGTGCGGGGCACGGCCACCGAGCCTGCTGCCAGACA
TGACGGAGTGCGTCAACACCGACAACGCCGCTGGTGGCACAGATGACAAA
AAGCATGACCCTGCTGCCAGACATGACGGAGTGCGTCAACACCGACAACG
CCGCTGGTGGCACAGATGACAAAAAGCATGAC
back to top