mRNA_E-siliculosus-1a_F_contig1488.2836.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1488.2836.1
Unique NamemRNA_E-siliculosus-1a_F_contig1488.2836.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1488.2836.1 vs. uniprot
Match: A0A6H5L5T7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5T7_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 7.030e-100
Identity = 159/174 (91.38%), Postives = 164/174 (94.25%), Query Frame = 1 
Query:    1 MIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETHRINYRIAAAEVIQRATRVFIARHTAERRRRVCGPAVLAASRIIQAEFRSWKARVKTADLAVRQKSLQELRERYWRDEKAKDEHRRRDASTVIQAAWRGAAARAVGLNRARRTLRGVLNELGGGRGRMHR 522
            MIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETH INYRI AAEVIQRATRVFIARHTAERRRRV GPAVLAASR+IQAEFRS KARVKTAD+AVRQ++ QELR+RYW DE AKDE RRRDASTVIQAAWRGAA RA GLNRARRTLRGVLNELGGGRGRMHR
Sbjct:   30 MIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETHHINYRIEAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRMIQAEFRSRKARVKTADVAVRQQNRQELRKRYWCDETAKDEQRRRDASTVIQAAWRGAAGRAAGLNRARRTLRGVLNELGGGRGRMHR 203
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1488.2836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5T7_9PHAE7.030e-10091.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1488contigE-siliculosus-1a_F_contig1488:4172..4999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size525
Model size525
Exons2
Ec32 orthologEc-28_003450.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927997.4650412-CDS-E-siliculosus-1a_F_contig1488:4171..46671622927997.4650412-CDS-E-siliculosus-1a_F_contig1488:4171..4667Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 4172..4667 -
1696318766.896789-CDS-E-siliculosus-1a_F_contig1488:4171..46671696318766.896789-CDS-E-siliculosus-1a_F_contig1488:4171..4667Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 4172..4667 -
1622927997.4802089-CDS-E-siliculosus-1a_F_contig1488:4970..49991622927997.4802089-CDS-E-siliculosus-1a_F_contig1488:4970..4999Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 4971..4999 -
1696318766.9083917-CDS-E-siliculosus-1a_F_contig1488:4970..49991696318766.9083917-CDS-E-siliculosus-1a_F_contig1488:4970..4999Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1488 4971..4999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1488.2836.1prot_E-siliculosus-1a_F_contig1488.2836.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1488 4172..4999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1488.2836.1

>prot_E-siliculosus-1a_F_contig1488.2836.1 ID=prot_E-siliculosus-1a_F_contig1488.2836.1|Name=mRNA_E-siliculosus-1a_F_contig1488.2836.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
MIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETHRINYR
IAAAEVIQRATRVFIARHTAERRRRVCGPAVLAASRIIQAEFRSWKARVK
TADLAVRQKSLQELRERYWRDEKAKDEHRRRDASTVIQAAWRGAAARAVG
LNRARRTLRGVLNELGGGRGRMHR*
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mRNA from alignment at E-siliculosus-1a_F_contig1488:4172..4999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1488.2836.1 ID=mRNA_E-siliculosus-1a_F_contig1488.2836.1|Name=mRNA_E-siliculosus-1a_F_contig1488.2836.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=828bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1488:4172..4999- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTCGCCGTTTCTGGCGATCCTCCGGGTAAGGCTTGAGGTGAATATT
TTTGCCATGGTTCGGTCGCGGTAGCCGGAGAGGCTTCCGCCGAAATGATG
TGAATACCATGAAAATTACGGTCTTGTGGACGATATGGTGCTATCCTGGA
ATGCAGGCACGCTCCAGGATTGGAGCTACTGTAACCCGGATTTCCATGTC
GTGTGAATGCTGCACCCCATCAGGAATAGACACGTCCCTTGCTTTAGTGG
GACGTTATCGCGTCTCCACCGCCTAGATAATCGTGAAGCGCTCACACAAA
CGTCGTTTGGAATGTTCTCACCGAACCTCCAGGCTTCCTTTGGATCACAT
ATTTGCAACCGCTGCGGGCGTATACCGTCGATCGCGCCTCCGAACTGCGC
TCTCAACCTGGCATTCCGTGGCCAAGGCAGAAACCCACCGCATCAACTAC
AGAATCGCGGCAGCAGAAGTCATCCAACGCGCTACACGAGTTTTCATCGC
AAGACATACAGCTGAGCGTCGCCGCCGCGTGTGTGGCCCGGCGGTGTTGG
CAGCCTCCCGCATCATTCAGGCCGAATTTCGCTCGTGGAAAGCCCGAGTA
AAGACTGCTGACCTAGCAGTTCGCCAGAAAAGCCTACAAGAGCTTCGAGA
ACGATACTGGCGCGACGAGAAGGCGAAAGACGAACACCGGCGACGAGATG
CGTCGACCGTGATACAAGCGGCGTGGAGGGGGGCTGCTGCGCGCGCAGTA
GGATTGAATAGGGCACGACGAACACTGAGGGGGGTGTTGAATGAGCTGGG
TGGTGGCCGGGGGCGCATGCACAGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1488:4172..4999-

>mRNA_E-siliculosus-1a_F_contig1488.2836.1 ID=mRNA_E-siliculosus-1a_F_contig1488.2836.1|Name=mRNA_E-siliculosus-1a_F_contig1488.2836.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1488:4172..4999- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTCGCCGTTTCTGGCGATCCTCCGGATGATTCGCCGTTTCTGGCGA
TCCTCCGGGCTTCCTTTGGATCACATATTTGCAACCGCTGCGGGCGTATA
CCGTCGATCGCGCCTCCGAACTGCGCTCTCAACCTGGCATTCCGTGGCCA
AGGCAGAAACCCACCGCATCAACTACAGAATCGCGGCAGCAGAAGTCATC
CAACGCGCTACACGAGTTTTCATCGCAAGACATACAGCTGAGCGTCGCCG
CCGCGTGTGTGGCCCGGCGGTGTTGGCAGCCTCCCGCATCATTCAGGCCG
AATTTCGCTCGTGGAAAGCCCGAGTAAAGACTGCTGACCTAGCAGTTCGC
CAGAAAAGCCTACAAGAGCTTCGAGAACGATACTGGCGCGACGAGAAGGC
GAAAGACGAACACCGGCGACGAGATGCGTCGACCGTGATACAAGCGGCGT
GGAGGGGGGCTGCTGCGCGCGCAGTAGGATTGAATAGGGCACGACGAACA
CTGAGGGGGGTGTTGAATGAGCTGGGTGGTGGCCGGGGGCGCATGCACAG
GTAGGCTTCCTTTGGATCACATATTTGCAACCGCTGCGGGCGTATACCGT
CGATCGCGCCTCCGAACTGCGCTCTCAACCTGGCATTCCGTGGCCAAGGC
AGAAACCCACCGCATCAACTACAGAATCGCGGCAGCAGAAGTCATCCAAC
GCGCTACACGAGTTTTCATCGCAAGACATACAGCTGAGCGTCGCCGCCGC
GTGTGTGGCCCGGCGGTGTTGGCAGCCTCCCGCATCATTCAGGCCGAATT
TCGCTCGTGGAAAGCCCGAGTAAAGACTGCTGACCTAGCAGTTCGCCAGA
AAAGCCTACAAGAGCTTCGAGAACGATACTGGCGCGACGAGAAGGCGAAA
GACGAACACCGGCGACGAGATGCGTCGACCGTGATACAAGCGGCGTGGAG
GGGGGCTGCTGCGCGCGCAGTAGGATTGAATAGGGCACGACGAACACTGA
GGGGGGTGTTGAATGAGCTGGGTGGTGGCCGGGGGCGCATGCACAGGTAG
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