mRNA_E-siliculosus-1a_F_contig14845.2826.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14845.2826.1
Unique NamemRNA_E-siliculosus-1a_F_contig14845.2826.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A0E9NCQ7_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCQ7_SAICN)

HSP 1 Score: 103 bits (256), Expect = 8.160e-25
Identity = 63/115 (54.78%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   22 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQPDSVAPGHLMKCKDID-------NIRTAFEASLPARIQCAPKPYEALFGNDPSAGSPTETLLRLHLPLNHEV 345
            PGSA CVQ FDDSL+SA   TYRISLRSSS+WEPR P LKVL         L +  +I          R++ EASL     C   P +  F NDPSAGSPTETLLRL LPLN +V
Sbjct:  127 PGSAMCVQRFDDSLNSAIHITYRISLRSSSMWEPRDPLLKVLFLLVALSSILFQTANIKLGLICGRRSRSSAEASLQVHKVCVYWPPKQHFNNDPSAGSPTETLLRLLLPLNDQV 241          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A8J4QKS9_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4QKS9_9ROSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.410e-18
Identity = 55/110 (50.00%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   37 CVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQ----PDSVAPGHLMKCKDIDNIRTA---FEASLPARIQCAPKPYEALFGNDPSAGSPTETLLRLHLPLNHEV 345
            CVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV+        +A  + + C      R     +   +  R Q  P    A  GNDPSAGSPTETLLRL LPLN  V
Sbjct:    2 CVQRFDDSLNSAIHTTYRISLRSSSMPEPRDPLLKVVTIKFFQTLIATANGLNCPVGGRTRRGNVRYSKDMGKRWQAKP----ATLGNDPSAGSPTETLLRLLLPLNDRV 107          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A401KYU3_ASPAW (Uncharacterized protein n=1 Tax=Aspergillus awamori TaxID=105351 RepID=A0A401KYU3_ASPAW)

HSP 1 Score: 81.3 bits (199), Expect = 2.180e-16
Identity = 58/127 (45.67%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   22 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQPDSVAPGHLMKCKDI----DNIRTAFEASLPARIQCAPKPYEAL---------------FGNDPSAGSPTETLLRLHLPLNHEV 345
            PG A CVQ  DDSL+SA   +YRISLRSSS+ EPR P LKVL  D +      + + +        T   A  P R   +  P EA                 GNDPSAGSPTETLLRL LPLN  V
Sbjct:  116 PGGAMCVQRLDDSLNSAIHISYRISLRSSSMPEPRDPLLKVLT-DCIQSTQTARFQTVFVLGSPAGTGPGAEAPPRRPTSGGPAEATGYNRHGWEVGPKGPALGNDPSAGSPTETLLRLLLPLNDRV 241          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: X1WS06_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WS06_ACYPI)

HSP 1 Score: 80.1 bits (196), Expect = 5.260e-16
Identity = 58/131 (44.27%), Postives = 66/131 (50.38%), Query Frame = 1
Query:   22 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQPDSVAPGHLMKCKDIDNIRTAFEASL----------PARIQCAPK-------------PYEALFGNDPSAGSPTETLLRLHLPLNHEV 345
            P  A CVQ  DDSL+SA   +YRISLRSSS+ EPR P LKVL        +L  C  +  ++TAF   L          P  +   P              P     GNDPSAGSPTETLLRL LPLN  V
Sbjct:  111 PEGAMCVQRLDDSLNSAIHISYRISLRSSSMPEPRDPLLKVLT-------NLASCLRLQ-LQTAFRGGLRRARARGRMPPGGLAAGPPKQHRFVQHGWEVGPRGPSLGNDPSAGSPTETLLRLLLPLNDRV 233          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A150UNC4_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150UNC4_9PEZI)

HSP 1 Score: 75.9 bits (185), Expect = 1.600e-15
Identity = 60/120 (50.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   22 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL---------QPDSVAPGHLMKCKDIDNIRTAFEASLPAR--------IQCAPKPYEALFGNDPSAGSPTETLLRLHLP 330
            P  A CVQ FDDSL+SA   TYRISLRSSS+ EPR P LKVL         Q DSV        K     R A  A  P R         +  P+P     GNDPSAGSPTETLLRL LP
Sbjct:    3 PRGAMCVQRFDDSLNSAIHITYRISLRSSSMPEPRDPLLKVLFDFALRSDAQQDSVG-------KVPRGPRRA--AGSPPRHKGLKVWGSEVGPEPS---LGNDPSAGSPTETLLRLLLP 110          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A401KRB4_ASPAW (Uncharacterized protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A401KRB4_ASPAW)

HSP 1 Score: 80.5 bits (197), Expect = 2.590e-15
Identity = 57/124 (45.97%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   22 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQPDSVAPGHLMKCKDI----DNIRTAFEASLPARIQCAPKPYEAL---------------FGNDPSAGSPTETLLRLHLPLN 336
            PG A CVQ  DDSL+SA   +YRISLRSSS+ EPR P LKVL  D +      + + +        T   A  P R   +  P EA                 GNDPSAGSPTETLLRL LPLN
Sbjct:  116 PGGAMCVQRLDDSLNSAIHISYRISLRSSSMPEPRDPLLKVLT-DCIQSTQTARFQTVFVLGSPAGTGRGAEAPPRRPTSGGPAEATGYNRHGWEVGPKGPALGNDPSAGSPTETLLRLLLPLN 238          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 3.130e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 KHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 136
            +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   75 RHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A2Z7BFW8_9LAMI (Tar1p (Fragment) n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BFW8_9LAMI)

HSP 1 Score: 76.3 bits (186), Expect = 4.900e-14
Identity = 51/116 (43.97%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   31 ARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQP-----DSVAPGHLMKCKDIDNIRTAF------EASLPARIQCAPKPYEALFGNDPSAGSPTETLLRLHLPLNHEV 345
            A CVQ  D S DSA    YRISLRSSS+ EPR+P  +V+        S   G+ ++  D + I   F      E  L  ++ C  +  +  + NDPSAGSPTETLLRL LPLN +V
Sbjct:   36 ATCVQRLDGSRDSAIHTKYRISLRSSSMREPRYPFPRVVMTFFNRCSSSRHGYRVRNPDGEVIGLVFLGACRAEMLLHTQVTCVAR-VQGRYDNDPSAGSPTETLLRLLLPLNDKV 150          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.950e-13
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 2
Query:    2 KHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 136
            KHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   10 KHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54          
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 67.4 bits (163), Expect = 1.460e-12
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 2
Query:    2 KHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 130
            KHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   35 KHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14845.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0E9NCQ7_SAICN8.160e-2554.78Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A8J4QKS9_9ROSI1.410e-1850.00Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A0A401KYU3_ASPAW2.180e-1645.67Uncharacterized protein n=1 Tax=Aspergillus awamor... [more]
X1WS06_ACYPI5.260e-1644.27Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
A0A150UNC4_9PEZI1.600e-1550.00Uncharacterized protein (Fragment) n=1 Tax=Acidomy... [more]
A0A401KRB4_ASPAW2.590e-1545.97Uncharacterized protein n=3 Tax=Aspergillus TaxID=... [more]
A0A524MI88_9PROT3.130e-1473.33Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
A0A2Z7BFW8_9LAMI4.900e-1443.97Tar1p (Fragment) n=1 Tax=Dorcoceras hygrometricum ... [more]
A0A1E7F0G0_9STRA1.950e-1371.11Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
B8CEF4_THAPS1.460e-1274.42Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14845contigE-siliculosus-1a_F_contig14845:6..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size345
Model size345
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelArthropoda
EggNOG OGs2E6PU@1,2SDCQ@2759,3ABW1@33154,3BVKN@33208,3DJX5@33213,4239J@6656
Seed eggNOG ortholog7029.ACYPI065480-PA
Seed ortholog evalue2.2e-12
Seed ortholog score78.6
Taxonomic scopeArthropoda
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14845.2826.1prot_E-siliculosus-1a_F_contig14845.2826.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14845 6..995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927996.0414643-CDS-E-siliculosus-1a_F_contig14845:5..1561622927996.0414643-CDS-E-siliculosus-1a_F_contig14845:5..156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14845 6..156 +
1696318766.228464-CDS-E-siliculosus-1a_F_contig14845:5..1561696318766.228464-CDS-E-siliculosus-1a_F_contig14845:5..156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14845 6..156 +
1622927996.0541286-CDS-E-siliculosus-1a_F_contig14845:477..5911622927996.0541286-CDS-E-siliculosus-1a_F_contig14845:477..591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14845 478..591 +
1696318766.2395246-CDS-E-siliculosus-1a_F_contig14845:477..5911696318766.2395246-CDS-E-siliculosus-1a_F_contig14845:477..591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14845 478..591 +
1622927996.0796294-CDS-E-siliculosus-1a_F_contig14845:915..9951622927996.0796294-CDS-E-siliculosus-1a_F_contig14845:915..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14845 916..995 +
1696318766.2494056-CDS-E-siliculosus-1a_F_contig14845:915..9951696318766.2494056-CDS-E-siliculosus-1a_F_contig14845:915..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14845 916..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14845.2826.1

>prot_E-siliculosus-1a_F_contig14845.2826.1 ID=prot_E-siliculosus-1a_F_contig14845.2826.1|Name=mRNA_E-siliculosus-1a_F_contig14845.2826.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=115bp
QACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQ
PDSVAPGHLMKCKDIDNIRTAFEASLPARIQCAPKPYEALFGNDPSAGSP
TETLLRLHLPLNHEV
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mRNA from alignment at E-siliculosus-1a_F_contig14845:6..995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14845.2826.1 ID=mRNA_E-siliculosus-1a_F_contig14845.2826.1|Name=mRNA_E-siliculosus-1a_F_contig14845.2826.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=990bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14845:6..995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGCATGCTCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTT TGATGATTCACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGC GTTCTTCATCGTTGTGGGAGCCAAGACATCCGTCGCTGAAAGTTTTACAA CGTTAAAGGTTGAGAAGGCGGCAGTCCGCGTCGGGACGCGCGCCTCCCTT TGAGTTCAGATTCAGAAGTTACTTGGGGTAAAAAAAGCGCTTTGATGCGA GACTCGGCGCGTTTGATTGCGCTGAGCTCGGCGAGACGCCCCTCGCCCAA CCAATAAGCAAGTATGAGGTCATTTCACGTGTTCCCCCCCACCAGACCCG GCTCCCTTACACCCCCCAACAACAGCCCCTCTCTCCGAGCGTTCCTCTCC CAACGCCCATCCGGCAAGCAGCAGCAGCTTCCAGTCCTTCCATCCATCCC TCCCTCCAGCAGCGCTCCAAAGCCGACAGCGTGGCTCCGGGACACCTGAT GAAGTGTAAAGATATAGATAATATACGCACGGCATTCGAGGCGAGCCTGC CTGCACGGATCCAGTGCGCTCCGAAACCCTACGAAGGTTCCAAAGCGCTC CGAAACCTGCTGCCGCACGGATCCAGTGCGCTCCGAAACCCTACGAAGGT TCCAAAGCGCTCCGAAACCTGCTGCATGACTCCAGCCTGCCTGCCTGTAT ACCATATACTTTTACGATAAGAAGAGAGAGACACAGCGCTCCGAAGCCGA GTGGCTCCAGCCCGCCATCCAGAAAAACCTATCCAAAGCAGCCATTCCGC CTGCACACGACCCCTGAAGAATAAATGTGCTCGATAGAGAAAAGCCCGCG TGGTGGGCAAAAGACAAGACAGCTAGGAATATATATGAAGATGAGGTTCG ATAGCGGTAGCCCTTTTCGGTAATGATCCTTCCGCAGGTTCACCTACGGA AACCTTGTTACGACTTCACCTTCCTCTAAATCATGAGGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14845:6..995+

>mRNA_E-siliculosus-1a_F_contig14845.2826.1 ID=mRNA_E-siliculosus-1a_F_contig14845.2826.1|Name=mRNA_E-siliculosus-1a_F_contig14845.2826.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14845:6..995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGCATGCTCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTT
TGATGATTCACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGC
GTTCTTCATCGTTGTGGGAGCCAAGACATCCGTCGCTGAAAGTTTTACAA
CCAAGCATGCTCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTT
TTGATGATTCACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTG
CGTTCTTCATCGTTGTGGGAGCCAAGACATCCGTCGCTGAAAGTTTTACA
ACCCGACAGCGTGGCTCCGGGACACCTGATGAAGTGTAAAGATATAGATA
ATATACGCACGGCATTCGAGGCGAGCCTGCCTGCACGGATCCAGTGCGCT
CCGAAACCCTACGAAGCCGACAGCGTGGCTCCGGGACACCTGATGAAGTG
TAAAGATATAGATAATATACGCACGGCATTCGAGGCGAGCCTGCCTGCAC
GGATCCAGTGCGCTCCGAAACCCTACGAAGCCCTTTTCGGTAATGATCCT
TCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCTTCCTCTAAA
TCATGAGGTTCCCTTTTCGGTAATGATCCTTCCGCAGGTTCACCTACGGA
AACCTTGTTACGACTTCACCTTCCTCTAAATCATGAGGTT
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