mRNA_E-siliculosus-1a_F_contig1484.2824.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: D8LDY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY5_ECTSI) HSP 1 Score: 272 bits (695), Expect = 7.540e-92 Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 1
Query: 1 MMKTMTAGTTGIVSFLPIIMVLLALSGTSAYAGSAFRGRSAQNEENLELLADAETINIDWRSLQVLAEDTCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCLIPEGGVT 462
M +T TAGTTGIV LPII VLLAL GTS YAGSAFRGR QNEENLELLADAETINI+WRSLQVLAEDTCHVEGVEGVS DGVYCCPLGCGQCGG GCGS DESL+FRD RELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCLIPEGG T
Sbjct: 1 MTRTTTAGTTGIVPILPII-VLLALGGTSVYAGSAFRGRGVQNEENLELLADAETININWRSLQVLAEDTCHVEGVEGVSGDGVYCCPLGCGQCGGIGCGSRDESLIFRDPRRELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCLIPEGGNT 153
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: A0A6H5JLD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD2_9PHAE) HSP 1 Score: 132 bits (332), Expect = 2.410e-33 Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1
Query: 196 LAEDTCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCLIPEG 453
LAEDTC+VEGVEGVSDDGVYCCPLGCGQCGG GCG++ +F D RELP A SSYCCL AF VCGD GVEPPC+IPEG
Sbjct: 167 LAEDTCYVEGVEGVSDDGVYCCPLGCGQCGGVGCGAIPVVNIFPDG-RELPEDATASSYCCLRAFVEIEVVCGDPGVEPPCVIPEG 251
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: D8LTF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF3_ECTSI) HSP 1 Score: 131 bits (329), Expect = 1.790e-32 Identity = 61/85 (71.76%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 199 AEDTCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCLIPEG 453
AEDTC+VEGVEGVSDDGVYCCPLGCGQCGG GCG++ +F D RELP A SSYCCL AF VCGD GVEPPC+IPEG
Sbjct: 449 AEDTCYVEGVEGVSDDGVYCCPLGCGQCGGEGCGAIPVVNIFPDG-RELPEDATASSYCCLKAFVDIEVVCGDPGVEPPCMIPEG 532
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: D7G7F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F0_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.530e-21 Identity = 69/140 (49.29%), Postives = 75/140 (53.57%), Query Frame = 1
Query: 4 MKTMTAGTTGIVSFLPIIMVLLALSGTSAYAGSAFRGRSAQNEENLELLADAETINIDWRSLQVLAEDTCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLG 423
MKTM AGT GIV PI VLLALSGT A AGSAF G SA NE N+ELLAD TINI+ RSLQ E TC G+ G+ + CC CG CGGTGC S D G S CC +S C G
Sbjct: 1 MKTMAAGTMGIV---PI--VLLALSGTLASAGSAFSGSSAHNEGNVELLADNGTININLRSLQAEVE-TCD-GGIVGIQQSDI-CCSSSCGSCGGTGCTSRD----------------GGSEACCGGGVRASGRFCSVYG 116
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 8.190e-17 Identity = 67/146 (45.89%), Postives = 75/146 (51.37%), Query Frame = 1
Query: 4 MKTMTAGTTGIVSFLPIIMVLLALSGTSAYAGSAFRGRSAQNEENLELLADAETINIDWRSLQVLAEDTCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCL 441
MKTM A T GIV PI VLLALSGT A AGSA G +A E N+ELLAD TINI+ RSLQ E TC G+ G+ + C CG CGGTGC S D G S CC +S C G E PC+
Sbjct: 1 MKTMAAVTMGIV---PI--VLLALSGTLASAGSALSGSNAHKEGNVELLADNGTININLRSLQAEVE-TCD-GGIVGIQQSDISC-SSSCGSCGGTGCTSRD----------------GGSEACCGGGVRASGRYCSVTG-EAPCM 121
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 7.900e-13 Identity = 55/128 (42.97%), Postives = 63/128 (49.22%), Query Frame = 1
Query: 58 MVLLALSGTSAYAGSAFRGRSAQNEENLELLADAETINIDWRSLQVLAEDTCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCL 441
+VLLAL+GT A AGSA S NE NLELLA+ ET N +WR LQ TC G+ G+ V CC L CG CGGTGC D G + CC SS C G E PC+
Sbjct: 6 LVLLALAGTLASAGSAV---SDHNEGNLELLANDETTNTNWRRLQAEVP-TCD-GGIVGIQSSDV-CCSLSCGSCGGTGCTGRD----------------GGADACCGGGVRSSGRFCSVTG-EAPCI 110
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.800e-12 Identity = 60/154 (38.96%), Postives = 74/154 (48.05%), Query Frame = 1
Query: 13 MTAGTTGIVSFLPIIMVLLALSGTSAYAGSAFRGRSAQNEENLELLADAETINIDWRSLQ----VLAEDTCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCLIPEGGVT 462
MTA G+V LPI VLLALSGT A AGSAFRG + +NE NL +ET NI+ RSLQ V T + G++ CCP+ CG CG GC + A G +S C + D+ CG E PC+I T
Sbjct: 1 MTAKAMGVVPILPI--VLLALSGTPASAGSAFRGLNVRNEANL-----SETDNINRRSLQTDDSVCTTSTGDISGIQNKD----VCCPVSCGMCGDEGCST---------------APGGAASCCTTNVLDAGIE-CG----EAPCVIDASSST 123
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: D8LRF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF3_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 6.110e-10 Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 4 MKTMTAGTTGIVSFLPIIMVLLALSGTSAYAGSAFRGRSAQNEENLELLADAETINIDWRSLQ 192
MKT TA GI S L ++VLLALSGTSA AGSA RGR E +++LLA+AE IN WRSLQ
Sbjct: 3 MKTTTAARIGIASIL--LIVLLALSGTSASAGSALRGRDVDLEGDVDLLAEAEEIN--WRSLQ 61
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 3.710e-8 Identity = 32/75 (42.67%), Postives = 39/75 (52.00%), Query Frame = 1
Query: 208 TCHVEGVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEP 432
TC +G+EG+ +GV CCPLGCGQC G+GCG+ + TSS CC SS C D GV P
Sbjct: 648 TCS-DGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAANGL------------TSSSCCGGGIKSSGNYCDDTGVAP 709
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 4.930e-8 Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 223 GVEGVSDDGVYCCPLGCGQCGGTGCGSLDESLVFRDAERELPAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCL 441
G+EG+ +GV CCPL CGQCGGTGC S + +G G+ S CC S DSS C D+ E PC+
Sbjct: 122 GIEGIDGNGVVCCPLECGQCGGTGCSSAGAA-----------SGLGSES-CCESGVDSSGRYC-DVTGEAPCI 181 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1484.2824.1 >prot_E-siliculosus-1a_F_contig1484.2824.1 ID=prot_E-siliculosus-1a_F_contig1484.2824.1|Name=mRNA_E-siliculosus-1a_F_contig1484.2824.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=154bp MMKTMTAGTTGIVSFLPIIMVLLALSGTSAYAGSAFRGRSAQNEENLELLback to top mRNA from alignment at E-siliculosus-1a_F_contig1484:26470..28385+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1484.2824.1 ID=mRNA_E-siliculosus-1a_F_contig1484.2824.1|Name=mRNA_E-siliculosus-1a_F_contig1484.2824.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1916bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1484:26470..28385+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1484:26470..28385+ >mRNA_E-siliculosus-1a_F_contig1484.2824.1 ID=mRNA_E-siliculosus-1a_F_contig1484.2824.1|Name=mRNA_E-siliculosus-1a_F_contig1484.2824.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1484:26470..28385+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |