mRNA_E-siliculosus-1a_F_contig1483.2818.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1483.2818.1
Unique NamemRNA_E-siliculosus-1a_F_contig1483.2818.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1483.2818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1483contigE-siliculosus-1a_F_contig1483:12151..14483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size348
Model size348
Exons3
Ec32 orthologEc-08_004240.1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1483.2818.1prot_E-siliculosus-1a_F_contig1483.2818.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1483 12151..14483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.120675-CDS-E-siliculosus-1a_F_contig1483:12150..122641622927995.120675-CDS-E-siliculosus-1a_F_contig1483:12150..12264Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 12151..12264 -
1696318765.9075952-CDS-E-siliculosus-1a_F_contig1483:12150..122641696318765.9075952-CDS-E-siliculosus-1a_F_contig1483:12150..12264Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 12151..12264 -
1622927995.1320288-CDS-E-siliculosus-1a_F_contig1483:13724..138001622927995.1320288-CDS-E-siliculosus-1a_F_contig1483:13724..13800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 13725..13800 -
1696318765.924924-CDS-E-siliculosus-1a_F_contig1483:13724..138001696318765.924924-CDS-E-siliculosus-1a_F_contig1483:13724..13800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 13725..13800 -
1622927995.1767344-CDS-E-siliculosus-1a_F_contig1483:14325..144831622927995.1767344-CDS-E-siliculosus-1a_F_contig1483:14325..14483Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 14326..14483 -
1696318765.9342494-CDS-E-siliculosus-1a_F_contig1483:14325..144831696318765.9342494-CDS-E-siliculosus-1a_F_contig1483:14325..14483Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 14326..14483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1483.2818.1

>prot_E-siliculosus-1a_F_contig1483.2818.1 ID=prot_E-siliculosus-1a_F_contig1483.2818.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp
QSIEQHTSTYWPAYSLRGRVRYRSSDIAGALRDLTVCVDEAPHDRAALKT
RARLFASQERWEDASRDLSAGLRGDPNDTDNYGGAVYDFGMIIDRAEVPS
ADDYIRRACAFCCGQV
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mRNA from alignment at E-siliculosus-1a_F_contig1483:12151..14483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1483.2818.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2818.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2333bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:12151..14483- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTCAATCGAGCAACATACCTCCACCTACTGGCCAGCTTATTCGCTGCG
AGGGCGGGTGAGGTACAGATCTAGCGATATCGCCGGGGCACTGCGGGACC
TGACGGTGTGCGTTGATGAGGCACCTCACGATCGAGCCGCGCTGAAGACT
CGCGCAAGGTACGAGTCGTTGTGCCCCTACTGCCATCCGTGATGAAAAGG
GGGTCTACCAGCTCATTTGTCGTTGGCAATGGCACGCGGATTTGGTTGAG
TTCGACAGAGAGACACAATTGAGCGCATACACTGGTGTGGGTTAGACACT
TGAGTGAGTGCTCTTCGAAAGAAGTAAGGAGGTCATGCAGGCACAAGGGA
AGACGTCGAGAACTGCAAAGCACACACACTGCAGTTATTTCAAATTACAA
TAGTAGCCGCACCATTCTTGCGGACAAGGATACCGTGTACTTCGTTGCCC
AAGGACAAGAACTTCGTGTTCATCCCGCTCGTTGTTGCTGACGAACGCCC
AAGGCGGTGCGTACGTTCAAGTATGCATACATACTGTCGTTGGTAAGAGA
AGCATCCAGTAGGCGCTGGCTCGTCACTCCAAAGGTTATTTTATTCCGGG
AGGGTGCATGGCCCGCCCGTGATTATTTCATCACAGCGCTCCTTCTTTTC
GCGGCGATCTTTGCGCTGCGACACCACCGACAGGCTGTTTGCAAGCCAAG
AGCGCTGGGAGGACGCATCGCGCGACCTTTCCGCTGGACTGCGCGGGGAT
CCCAACGATGTGAGACACGCGCCAAACTTGCTGAGTGCCGGGCACAAAGT
GAATTAATCACAGCAGTAGCAGCAGGTGCTGGAGACGTAGCTCAGCACGC
ACTCGTGCACGTTCCAGCTGCCGCACGTTTAGAGAAAGATGCAGCACATC
ATGGGAGGCAGGTTGCGCGGCAGCAGTGGTGATAGTCGTCCCGTGTTCTT
TGCGGACTCTCAAGCCACGTCATTCCGTGTAGTGACAACAATCCGCGTAT
AGCGCAGTCAACAGATCCGGACGCCTCCCATTGACACCGTTCCTCAAAGT
GTCCCTTCTCGAAAACGATCGGCGCTCTTGGATCCAACCTACCGGGCGGG
ATGCCTGGATGCAACACCAGCTGGAGGGGTATCTCCTTCGCGGAAACGCC
TTGATACACGTAAGAGGGCGACGCGTAAAGTAGCCGGCATCTTTGCAGAG
AGAGAAATAAACGTTCCTAACGAGGGCCCTGAAAGGGTGTCAATTCTCGG
ACAACGCCAATCCAGAAACACACAACATTGCAGGAGGCTAAAAGCTCAGA
AGGCACACAGAGCTCACCACTTAGAGGAGGGGCCCCCGCGAAAACCACAG
CTTTCCGTAGGCATATCTAGGCACCAACGGACCCCCGAAGGATCTGTCTT
CGCGCCCCTGTGACGCCCACGAGTAGTGCGAATCTTTTTGTCGTCCTCCG
AGCCGACCAACATCACGATGTCCTGGAATTTGTGCGGGTCGTACTTTAGG
AGACCGTGATCAAGATGCAAGCAGAACGGAGCGTGACGTCTGATTGCACG
GACAAAGCGCTTGTCACGATTCATGGCGAGAGAATGTTTTCGACTTCTTC
TGTCGATGCAGGAGGCGCCTCCCACGTCTCGTTGTACAATGTAATGGGCA
CGTTTCGACGGCAAATGGTCGCGTTTGTCGTGACGGCAATACTCGATGTA
CGAGGCAGAGTCGGTCGCTGTGAAAATACCGCCGGAATTTGCTGTACGCA
TCTATTCTTGTGCGGCAACAAGGCGTTAGCCCACAGAGACTGTCCATTCC
GATCGTACTTCTAATGTGGTAGTTAAATTTCCTTTGAAACATCGGACAAG
ACTTGAGCCCTCCAAGTACTTTTTTCGTTGTTTGTCTAGCCCGAAGGTAG
CTTGTTCAAGGGAAATGCACCAGAGGCGCCTCATCCATCGCATTTGAGGT
AGGGCAGATGAGGTGGTCGCATCGTGCGGCTAGCGCCACCGCTGGACCCC
ATCCTGAATCGGTTTGGACGAAAGCGGGATTTCCGCAGAGTACTCGCGGA
AGCGCATCGTTTGTCGTTAGACTTGTGGCTTCTCAAGCACGTCGACCCAA
AACAACACCGCGACCAGCACTCCTCCCGCCGTTCCTGACGACTTTGCCGA
TCGACCCTTCTTCTCTTGGCCCTCAAACAACGCAACAAACACTCTTCCCG
TGGGCTGCGGGGACAACAGACGGATAACTACGGTGGAGCGGTGTACGACT
TTGGCATGATCATCGACCGCGCCGAAGTCCCCTCCGCCGACGACTACATC
CGGCGGGCCTGTGCCTTCTGTTGCGGACAGGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1483:12151..14483-

>mRNA_E-siliculosus-1a_F_contig1483.2818.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2818.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:12151..14483- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTCAATCGAGCAACATACCTCCACCTACTGGCCAGCTTATTCGCTGCG
AGGGCGGGTGAGGTACAGATCTAGCGATATCGCCGGGGCACTGCGGGACC
TGACGGTGTGCGTTGATGAGGCACCTCACGATCGAGCCGCGCTGAAGACT
CGCGCAAGCAGTCAATCGAGCAACATACCTCCACCTACTGGCCAGCTTAT
TCGCTGCGAGGGCGGGTGAGGTACAGATCTAGCGATATCGCCGGGGCACT
GCGGGACCTGACGGTGTGCGTTGATGAGGCACCTCACGATCGAGCCGCGC
TGAAGACTCGCGCAAGGCTGTTTGCAAGCCAAGAGCGCTGGGAGGACGCA
TCGCGCGACCTTTCCGCTGGACTGCGCGGGGATCCCAACGATGCTGTTTG
CAAGCCAAGAGCGCTGGGAGGACGCATCGCGCGACCTTTCCGCTGGACTG
CGCGGGGATCCCAACGATACGGATAACTACGGTGGAGCGGTGTACGACTT
TGGCATGATCATCGACCGCGCCGAAGTCCCCTCCGCCGACGACTACATCC
GGCGGGCCTGTGCCTTCTGTTGCGGACAGGTTACGGATAACTACGGTGGA
GCGGTGTACGACTTTGGCATGATCATCGACCGCGCCGAAGTCCCCTCCGC
CGACGACTACATCCGGCGGGCCTGTGCCTTCTGTTGCGGACAGGTT
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