mRNA_E-siliculosus-1a_F_contig1483.2817.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1483.2817.1
Unique NamemRNA_E-siliculosus-1a_F_contig1483.2817.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1483.2817.1 vs. uniprot
Match: A0A6H5JH87_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH87_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.940e-11
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  175 SPWVEIIGIALGISTGWYFRRRDVITKRETQXXXXQ-LVVGWREQA 309
            S   EIIGIALGISTGWYFRRRDVIT+RETQ    Q LVVGW EQA
Sbjct:   12 STNTEIIGIALGISTGWYFRRRDVITERETQRQQQQQLVVGWLEQA 57
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1483.2817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH87_9PHAE6.940e-1178.26Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1483contigE-siliculosus-1a_F_contig1483:7476..8661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size249
Model size310
Exons2
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1483.2817.1prot_E-siliculosus-1a_F_contig1483.2817.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1483 7476..8601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.0051825-CDS-E-siliculosus-1a_F_contig1483:7475..76771622927995.0051825-CDS-E-siliculosus-1a_F_contig1483:7475..7677Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 7476..7677 -
1696318765.8663964-CDS-E-siliculosus-1a_F_contig1483:7475..76771696318765.8663964-CDS-E-siliculosus-1a_F_contig1483:7475..7677Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 7476..7677 -
1622927995.018971-CDS-E-siliculosus-1a_F_contig1483:8554..86011622927995.018971-CDS-E-siliculosus-1a_F_contig1483:8554..8601Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 8555..8601 -
1696318765.8750782-CDS-E-siliculosus-1a_F_contig1483:8554..86011696318765.8750782-CDS-E-siliculosus-1a_F_contig1483:8554..8601Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 8555..8601 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.0336187-UTR-E-siliculosus-1a_F_contig1483:8601..86611622927995.0336187-UTR-E-siliculosus-1a_F_contig1483:8601..8661Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1483 8602..8661 -
1696318765.8846269-UTR-E-siliculosus-1a_F_contig1483:8601..86611696318765.8846269-UTR-E-siliculosus-1a_F_contig1483:8601..8661Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1483 8602..8661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1483.2817.1

>prot_E-siliculosus-1a_F_contig1483.2817.1 ID=prot_E-siliculosus-1a_F_contig1483.2817.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2817.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
MLLLGRLLGRPVAAAIIEVDGGVDVYVLLRRCLVVAFSSPWVEIIGIALG
ISTGWYFRRRDVITKRETQQQQQQLVVGWREQA
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mRNA from alignment at E-siliculosus-1a_F_contig1483:7476..8661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1483.2817.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2817.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2817.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1186bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:7476..8661- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTTGACTTTGACTTGACAAGCCTTTTTCTCGCGCTTGAGACACAGGCA
GGCAGGCGGGATGCTTCTCTTGGGGCGGCTCCTGGGCCGACCTGTAGCTG
CAGCGATGTGAGTGCGATAACCTTTTGTGACGTCAACAAAACGCTACCGG
TGTGTTCCGGTTTCTGCATGCCCCAGGAACGGCGTTGCGCATGATGCCAG
CCTATTCGGGCATCAAATAGTGTTCATAATGTTCACGAGGGTTGATGGGT
GTTCGTATCTTCGATATACTCCTACAGCAGTACATGGTAGAATACCGCGT
GGTGTTTAGCGCACGCCCGCTGCCGCGGGCGCGCCGACTATCCGCAAGGA
TGCACGCCGTTAGTGGCATTACAAGTACGCGTTGAAGGATGAAGTCGTGA
TCAGGTGGTTCGGGGGAGCTTGCATGCCCTACGCCTGCTGCTGAGTTGTT
GGCCAAGGGTGCCGAGGGAGTATTAGTATTGTCAAGAGCACCAGAAGTCT
ACATATATCAAGCCTGTGAGGACCGCCCGACATCCGTTTGTCAACCCCCT
GCCCTCCACCCTTCGAAAGATAGCGGCGCCCAACAGAAATCCAGCGTATC
TGCCAAAGTGCGCCCCACCCAGCAGTAGACAATCAATCCATCAGCCGATA
TCCTGGTGTGCGAAGTAGACCGAGGTATTTATTATCGGATGGATCTTTTT
CCCGTACAGACCGTGCTTCGAGCCTACATGTTCTCATTCCCACGGATATC
CTAAACTCGAGTCGAGAACCTTGATCCCGCGGGTGACTCGCGCCATGCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCGTTCCCCG
ACCCTCCTTGGCCTGTCCACGAACACCGGTAACTTGGCGGCGTGAAACCT
ACCCGTACATACATACAATCAAAACAAACATCAGCATCGAAGTCGACGGC
GGCGTCGACGTGTACGTCCTACTCCGGCGGTGTCTCGTCGTGGCCTTCTC
CTCGCCGTGGGTAGAGATCATCGGCATCGCGCTCGGGATAAGCACGGGCT
GGTACTTTCGACGGCGTGATGTCATCACCAAGAGGGAGACGCAGCAGCAG
CAGCAGCAGCTGGTGGTGGGCTGGCGGGAGCAGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1483:7476..8661-

>mRNA_E-siliculosus-1a_F_contig1483.2817.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2817.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2817.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:7476..8661- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTCTCTTGGGGCGGCTCCTGGGCCGACCTGTAGCTGCAGCGATATG
CTTCTCTTGGGGCGGCTCCTGGGCCGACCTGTAGCTGCAGCGATCATCGA
AGTCGACGGCGGCGTCGACGTGTACGTCCTACTCCGGCGGTGTCTCGTCG
TGGCCTTCTCCTCGCCGTGGGTAGAGATCATCGGCATCGCGCTCGGGATA
AGCACGGGCTGGTACTTTCGACGGCGTGATGTCATCACCAAGAGGGAGAC
GCAGCAGCAGCAGCAGCAGCTGGTGGTGGGCTGGCGGGAGCAGGCGCATC
GAAGTCGACGGCGGCGTCGACGTGTACGTCCTACTCCGGCGGTGTCTCGT
CGTGGCCTTCTCCTCGCCGTGGGTAGAGATCATCGGCATCGCGCTCGGGA
TAAGCACGGGCTGGTACTTTCGACGGCGTGATGTCATCACCAAGAGGGAG
ACGCAGCAGCAGCAGCAGCAGCTGGTGGTGGGCTGGCGGGAGCAGGCG
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