mRNA_E-siliculosus-1a_F_contig1483.2815.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1483.2815.1
Unique NamemRNA_E-siliculosus-1a_F_contig1483.2815.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1483.2815.1 vs. uniprot
Match: D8LT50_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT50_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.230e-53
Identity = 185/234 (79.06%), Postives = 188/234 (80.34%), Query Frame = -2 
Query:   24 LFDGTGSGSESSCRFGGFSLSADAKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRKTSAATRPRTDKTMPKKAATPAAAAAXXTPATAVRDAKPSPRLSPSSSSATXXXXSAKTAPIAPP-------------AVAARPEGKENTLDGVDTKKAGAGREPCNPGVGGGKPRSGTRAGTETAXXXXXXXXXXXXXAATPTWWDRGTLLSLESA 686
            LFDGTGSGSESSCRFGGFSLSADAKQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      TSAAT PRTDKTMP KAAT AAAAA  TPATA+RDAKPSPR+SPSS    XXXX  KTAPIAP              AVAARP+GKENTLDGVDTKKAGAGREP NPGVGGGKPRSGTRAGTETA             AATPTWWDRGTLLSLESA
Sbjct:  103 LFDGTGSGSESSCRFGGFSLSADAKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT----TSAATGPRTDKTMPTKAATLAAAAA--TPATAIRDAKPSPRVSPSSXXXXXXXXXXKTAPIAPXXXXXXXXXXXXXXAVAARPDGKENTLDGVDTKKAGAGREPRNPGVGGGKPRSGTRAGTETAAAAPAPAAPEAT-AATPTWWDRGTLLSLESA 329
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BLAST of mRNA_E-siliculosus-1a_F_contig1483.2815.1 vs. uniprot
Match: A0A6H5JH87_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH87_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.640e-43
Identity = 182/236 (77.12%), Postives = 184/236 (77.97%), Query Frame = -2 
Query:   24 LFDGTGSGSESSCRFGGFSLSADAKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRKTSAATRPRTDKTMPKKAATPAAAAAXXTPATAVRDAKPSPRLSPSSSSATXXXXSAKTAPIAPP---------------AVAARPEGKENTLDGVDTKKAGAGREPCNPGVGGGKPRSGTRAGTETAXXXXXXXXXXXXXAATPTWWDRGTLLSLESA 686
            LFDGTGSGSESSCRFGGFSLSADAKQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     PRKTSAAT PRTDKT+PKKAATPA AA XX PA A+RDAKPSPR S S     XXXX                         AVAARPEGKENTLDG DTKKAGA REP NP VGGGKPRSGT AGTETA  XXXXXXXXX  AATPTWWDRGTLLSLESA
Sbjct:  680 LFDGTGSGSESSCRFGGFSLSADAKQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----PRKTSAATGPRTDKTIPKKAATPAVAAXXX-PAAAIRDAKPSPRPSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAARPEGKENTLDGADTKKAGAEREPRNPWVGGGKPRSGTSAGTETAASXXXXXXXXXT-AATPTWWDRGTLLSLESA 908
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1483.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT50_ECTSI1.230e-5379.06Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JH87_9PHAE1.640e-4377.12Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1483contigE-siliculosus-1a_F_contig1483:4538..5226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size687
Model size690
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.083363-CDS-E-siliculosus-1a_F_contig1483:4537..52241622927995.083363-CDS-E-siliculosus-1a_F_contig1483:4537..5224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 4538..5224 +
1696318765.894937-CDS-E-siliculosus-1a_F_contig1483:4537..52241696318765.894937-CDS-E-siliculosus-1a_F_contig1483:4537..5224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 4538..5224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1483.2815.1prot_E-siliculosus-1a_F_contig1483.2815.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1483 4538..5224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1483.2815.1

>prot_E-siliculosus-1a_F_contig1483.2815.1 ID=prot_E-siliculosus-1a_F_contig1483.2815.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2815.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=229bp
PPPPPPPPADSRDSRVPRSHHVGVAAAASGAAAGAAAAAAVSVPALVPER
GLPPPTPGLHGSLPAPAFFVSTPSRVFSFPSGLAATAGGAIGAVLADDVD
TVAEEEEGLSRGEGLASRTAVAGVAAAAAAAGVAAFLGIVLSVLGRVAAE
VFLGEPAPPLLEVRCCRRCCCCCCGCCDGCCGTPSCVSRCCCWACCRGSW
WCCCFASADKLKPPNLQLLSLPLPVPSKS
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mRNA from alignment at E-siliculosus-1a_F_contig1483:4538..5226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1483.2815.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2815.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2815.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=689bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:4538..5226+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCCGCCGCCTCCACCGCCGCCGGCAGACTCGAGGGACAGCAGGGTCCC
TCGGTCCCACCATGTTGGCGTTGCCGCCGCCGCCTCCGGTGCTGCTGCTG
GTGCTGCGGCAGCGGCGGCGGTCTCTGTTCCTGCCCTTGTTCCTGAGCGG
GGCTTGCCACCGCCCACGCCGGGGTTGCACGGCTCCCTCCCCGCTCCGGC
CTTCTTCGTGTCCACCCCGTCGAGGGTGTTCTCCTTTCCCTCGGGTCTCG
CCGCCACTGCCGGCGGCGCGATCGGTGCCGTTTTGGCCGACGATGTCGAC
ACCGTGGCCGAGGAGGAGGAGGGGCTGAGCCGAGGGGAGGGCTTAGCGTC
ACGAACCGCTGTCGCCGGTGTCGCCGCCGCCGCCGCCGCCGCCGGTGTAG
CCGCCTTCTTAGGCATCGTCTTGTCCGTCCTTGGGCGGGTGGCGGCCGAG
GTTTTCCTCGGGGAACCGGCACCGCCACTGTTGGAAGTCCGTTGCTGCCG
TCGCTGCTGCTGCTGCTGCTGCGGCTGTTGCGATGGCTGCTGCGGCACCC
CCTCTTGCGTGTCTCGGTGCTGCTGCTGGGCTTGTTGCCGCGGGTCGTGG
TGGTGCTGCTGCTTTGCGTCGGCCGACAAGCTGAAGCCGCCGAACCTACA
GCTGCTCTCACTCCCGCTACCGGTACCGTCAAAGAGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1483:4538..5226+

>mRNA_E-siliculosus-1a_F_contig1483.2815.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2815.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2815.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:4538..5226+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCCGCCGCCTCCACCGCCGCCGGCAGACTCGAGGGACAGCAGGGTCCC
TCGGTCCCACCATGTTGGCGTTGCCGCCGCCGCCTCCGGTGCTGCTGCTG
GTGCTGCGGCAGCGGCGGCGGTCTCTGTTCCTGCCCTTGTTCCTGAGCGG
GGCTTGCCACCGCCCACGCCGGGGTTGCACGGCTCCCTCCCCGCTCCGGC
CTTCTTCGTGTCCACCCCGTCGAGGGTGTTCTCCTTTCCCTCGGGTCTCG
CCGCCACTGCCGGCGGCGCGATCGGTGCCGTTTTGGCCGACGATGTCGAC
ACCGTGGCCGAGGAGGAGGAGGGGCTGAGCCGAGGGGAGGGCTTAGCGTC
ACGAACCGCTGTCGCCGGTGTCGCCGCCGCCGCCGCCGCCGCCGGTGTAG
CCGCCTTCTTAGGCATCGTCTTGTCCGTCCTTGGGCGGGTGGCGGCCGAG
GTTTTCCTCGGGGAACCGGCACCGCCACTGTTGGAAGTCCGTTGCTGCCG
TCGCTGCTGCTGCTGCTGCTGCGGCTGTTGCGATGGCTGCTGCGGCACCC
CCTCTTGCGTGTCTCGGTGCTGCTGCTGGGCTTGTTGCCGCGGGTCGTGG
TGGTGCTGCTGCTTTGCGTCGGCCGACAAGCTGAAGCCGCCGAACCTACA
GCTGCTCTCACTCCCGCTACCGGTACCGTCAAAGAGCCCGCCGCCGCCTC
CACCGCCGCCGGCAGACTCGAGGGACAGCAGGGTCCCTCGGTCCCACCAT
GTTGGCGTTGCCGCCGCCGCCTCCGGTGCTGCTGCTGGTGCTGCGGCAGC
GGCGGCGGTCTCTGTTCCTGCCCTTGTTCCTGAGCGGGGCTTGCCACCGC
CCACGCCGGGGTTGCACGGCTCCCTCCCCGCTCCGGCCTTCTTCGTGTCC
ACCCCGTCGAGGGTGTTCTCCTTTCCCTCGGGTCTCGCCGCCACTGCCGG
CGGCGCGATCGGTGCCGTTTTGGCCGACGATGTCGACACCGTGGCCGAGG
AGGAGGAGGGGCTGAGCCGAGGGGAGGGCTTAGCGTCACGAACCGCTGTC
GCCGGTGTCGCCGCCGCCGCCGCCGCCGCCGGTGTAGCCGCCTTCTTAGG
CATCGTCTTGTCCGTCCTTGGGCGGGTGGCGGCCGAGGTTTTCCTCGGGG
AACCGGCACCGCCACTGTTGGAAGTCCGTTGCTGCCGTCGCTGCTGCTGC
TGCTGCTGCGGCTGTTGCGATGGCTGCTGCGGCACCCCCTCTTGCGTGTC
TCGGTGCTGCTGCTGGGCTTGTTGCCGCGGGTCGTGGTGGTGCTGCTGCT
TTGCGTCGGCCGACAAGCTGAAGCCGCCGAACCTACAGCTGCTCTCACTC
CCGCTACCGGTACCGTCAAAGAGC
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