mRNA_E-siliculosus-1a_F_contig14818.2813.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14818.2813.1
Unique NamemRNA_E-siliculosus-1a_F_contig14818.2813.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A0D5LYG7_9GAMM (Acriflavin resistance protein n=43 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D5LYG7_9GAMM)

HSP 1 Score: 625 bits (1611), Expect = 2.750e-215
Identity = 316/349 (90.54%), Postives = 337/349 (96.56%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFPASNTPIFFVDYRTPEGTDILETQRRVSELE SVMAM GVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLI+ET++K IQ+ RMA+VEQVLERDHSDID+KI PLEVGPAPKAKLEARFYGSDPAVLRQLG+QVEAMFRDTP MTSVRTSWRNRVQ IEPVFLEDTARRLGVTRE+LA+TLALSTSGSQVG+YRDGS+LIPIVAR+I EQRHDVDNLGSLNVWS EQ RYITADQV+SDITTQVADPLIMRRNRERMLAVYGEP PLSGVTAASVL +IRPRVEAL++P+GYRLEWGGE+ETAGEAQSGLF+SLPLG+VMMFI+TVVLFNNFRQPLAIWSLVPLTII
Sbjct:  545 FFPASNTPIFFVDYRTPEGTDILETQRRVSELEESVMAMEGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIIETDDKAIQQARMADVEQVLERDHSDIDFKIVPLEVGPAPKAKLEARFYGSDPAVLRQLGDQVEAMFRDTPNMTSVRTSWRNRVQAIEPVFLEDTARRLGVTREDLASTLALSTSGSQVGVYRDGSDLIPIVARSIPEQRHDVDNLGSLNVWSAEQSRYITADQVISDITTQVADPLIMRRNRERMLAVYGEPDPLSGVTAASVLTDIRPRVEALDLPSGYRLEWGGEFETAGEAQSGLFSSLPLGIVMMFILTVVLFNNFRQPLAIWSLVPLTII 893          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A5J6LAG9_9GAMM (Efflux RND transporter permease subunit n=1 Tax=Nitrincola iocasae TaxID=2614693 RepID=A0A5J6LAG9_9GAMM)

HSP 1 Score: 614 bits (1584), Expect = 3.310e-211
Identity = 307/349 (87.97%), Postives = 336/349 (96.28%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFPASNTPIFFVDYRTPEGTDILETQRR+SELENSVM M G+RHLTTTVGGGAQRFTLTYSPE+RYASYAQLIVET+NK+ QRER+AEVE+VL+RDHSDIDYKIAPLEVGP+PKAKLEAR YGSDP VLRQLG+QVEA+FRDTP MTSVR SWRNRVQ ++PVFLEDTARRLGVTRE+LA+TLA+STSGSQVG+YRDGS+LIPIVARA  EQR+DVDN+GSLNVWS EQ RYITADQVMSD+TTQVADPLIMRRNRERMLA+YGEPHPLSGVTAASVLAEIRP+V+AL +PAGYRLEWGGEYET+G+AQSGLFASLPLGLV+MFI+TVVLFNNFRQPLAIWSLVPLTII
Sbjct:  545 FFPASNTPIFFVDYRTPEGTDILETQRRISELENSVMEMEGIRHLTTTVGGGAQRFTLTYSPENRYASYAQLIVETDNKSTQRERIAEVEKVLKRDHSDIDYKIAPLEVGPSPKAKLEARLYGSDPEVLRQLGDQVEALFRDTPHMTSVRASWRNRVQTLKPVFLEDTARRLGVTREDLASTLAVSTSGSQVGVYRDGSDLIPIVARATQEQRYDVDNIGSLNVWSNEQGRYITADQVMSDVTTQVADPLIMRRNRERMLAIYGEPHPLSGVTAASVLAEIRPQVDALALPAGYRLEWGGEYETSGDAQSGLFASLPLGLVVMFILTVVLFNNFRQPLAIWSLVPLTII 893          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A060B416_9GAMM (Multidrug transporter AcrB n=18 Tax=Halomonas TaxID=2745 RepID=A0A060B416_9GAMM)

HSP 1 Score: 591 bits (1523), Expect = 5.470e-202
Identity = 298/349 (85.39%), Postives = 324/349 (92.84%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFPASNTPIFFVDYRTPEGTDILET+RRV+ELE  VM M GVRHLTT VGGGAQRFTLTY+PEDRYASY+QLIVET+NK IQ+ RMA++E VLERDHSDIDYKIAPLEVGPAPKAK+EARFYGSDPAVLRQLG+QV A+F DT  M SVRT+WRNRVQ + P+F EDTARRLGVTRE LA TLALSTSGSQVGIYRDGS+LIPIVARAI EQR+D+DN+GSLNVWS EQ RYITADQVM D+TTQVADPLIMRR+RERMLAVYGEP PLSGVTAASVLA++RP+VEALE+P GYRLEWGGE+ETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIW LVPLTI+
Sbjct:  545 FFPASNTPIFFVDYRTPEGTDILETERRVAELEEVVMEMEGVRHLTTVVGGGAQRFTLTYAPEDRYASYSQLIVETDNKAIQQARMADIEAVLERDHSDIDYKIAPLEVGPAPKAKIEARFYGSDPAVLRQLGDQVAALFSDTSNMVSVRTNWRNRVQAVVPIFAEDTARRLGVTRENLAATLALSTSGSQVGIYRDGSDLIPIVARAIPEQRNDIDNVGSLNVWSAEQGRYITADQVMRDVTTQVADPLIMRRDRERMLAVYGEPDPLSGVTAASVLAQVRPQVEALELPPGYRLEWGGEFETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWFLVPLTIV 893          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A7C9NPX9_9GAMM (Efflux RND transporter permease subunit n=2 Tax=Halomonas TaxID=2745 RepID=A0A7C9NPX9_9GAMM)

HSP 1 Score: 565 bits (1456), Expect = 5.450e-192
Identity = 283/349 (81.09%), Postives = 316/349 (90.54%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFPASNTPIFFVDYRTPEGTDILET+RRV+ LE SVM M G++ LTT VGGGAQRFTLTY+PEDR+ASYAQLI+ET++K  Q+ RMA+VE +L RDHSDIDYKIAPLEVGPAPKAKLEAR YGSDPAVLR+LG+QV A+F DTP +TSVRT+WRNRVQ I P+F ED ARRLGVTRE LA TLALSTSGSQVG+YRDGS+LIPIVARAI  QR+D+DN+GSLNVWS EQ RYITADQVM D+TTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVL ++RP+VEALE+P GYRLEWGGE+ET+G+AQ  LFASLPLGL +MFIITVVLFNNFRQ LA+W LVPLTII
Sbjct:  545 FFPASNTPIFFVDYRTPEGTDILETERRVTALEESVMGMEGIQQLTTIVGGGAQRFTLTYAPEDRFASYAQLIIETDDKATQQARMADVEAMLARDHSDIDYKIAPLEVGPAPKAKLEARLYGSDPAVLRELGDQVAALFNDTPNLTSVRTNWRNRVQSIVPIFAEDAARRLGVTRESLAATLALSTSGSQVGVYRDGSDLIPIVARAIPAQRNDIDNIGSLNVWSAEQGRYITADQVMRDVTTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLDKVRPQVEALELPPGYRLEWGGEFETSGDAQRALFASLPLGLAVMFIITVVLFNNFRQALAVWFLVPLTII 893          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A3T1DYA4_9GAMM (Uncharacterized protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=A0A3T1DYA4_9GAMM)

HSP 1 Score: 538 bits (1386), Expect = 1.500e-189
Identity = 275/301 (91.36%), Postives = 291/301 (96.68%), Query Frame = 1
Query:  145 VGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            +GGGAQRFTLTYSPEDRYASYAQLIVET++K  Q +RMA+VEQVL+RDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLG+QVEAMFRDTP MTSVRTSWRNRVQ IEPVFLEDTARRLGVTRE+LA+TLALSTSGSQVGIYRDGS+LIPIVARAI EQRHDVDNLGSLNVWS EQ RYITADQV+SDI TQVADPLIMRRNRERMLAVYGEP PLSG+TAASVLAEIRPRVEAL++PAGYRLEWGGEYETAGEAQSGLFASLPLG+VMMFI+TVVLFNNFRQPLAIWSLVPLTII
Sbjct:    1 MGGGAQRFTLTYSPEDRYASYAQLIVETDDKATQHDRMADVEQVLKRDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGDQVEAMFRDTPNMTSVRTSWRNRVQAIEPVFLEDTARRLGVTREDLASTLALSTSGSQVGIYRDGSDLIPIVARAIPEQRHDVDNLGSLNVWSAEQNRYITADQVISDIITQVADPLIMRRNRERMLAVYGEPDPLSGMTAASVLAEIRPRVEALDLPAGYRLEWGGEYETAGEAQSGLFASLPLGIVMMFILTVVLFNNFRQPLAIWSLVPLTII 301          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A368TZJ3_9GAMM (AcrB/AcrD/AcrF family protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A368TZJ3_9GAMM)

HSP 1 Score: 556 bits (1433), Expect = 1.590e-188
Identity = 284/349 (81.38%), Postives = 306/349 (87.68%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFPASNTPIFFVDY  PEGTDILETQRR+SELE +VMAM G+ HLTT VGGGAQRFTLTYSPE+RYASYAQLIVET +K  Q +RM EVE  LER H D+DYKI PLEVGPAPKAKLEAR YGSDP VLRQLG  VEA+F + P  TSVR SWRNRVQVI+PVFLED ARRLGVTR  LA+TLAL+TSG+QVGIYRDGS+LIPI+ARA   QRHDVDN GSLNVWSEE+ RYI ADQV+  +TTQVADPLI+RRNR+RMLAVY EPHPLSGVTAASVL  IRP VEALE+P GYRLEWGGEYETAGEAQSGLFASLPLGLV+MFIITVVLFNN RQ LAIWSLVPLTII
Sbjct:  545 FFPASNTPIFFVDYWMPEGTDILETQRRISELEETVMAMEGIEHLTTVVGGGAQRFTLTYSPEERYASYAQLIVETPDKQTQHQRMGEVEAALERYHPDVDYKIMPLEVGPAPKAKLEARLYGSDPEVLRQLGADVEALFHEEPLATSVRQSWRNRVQVIKPVFLEDAARRLGVTRAGLADTLALNTSGAQVGIYRDGSDLIPIIARAAPGQRHDVDNFGSLNVWSEERGRYIAADQVIEQVTTQVADPLILRRNRQRMLAVYAEPHPLSGVTAASVLERIRPEVEALELPPGYRLEWGGEYETAGEAQSGLFASLPLGLVVMFIITVVLFNNLRQALAIWSLVPLTII 893          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A1G8R4H1_9GAMM (Multidrug efflux pump subunit AcrB n=1 Tax=Halomonas gudaonensis TaxID=376427 RepID=A0A1G8R4H1_9GAMM)

HSP 1 Score: 526 bits (1355), Expect = 8.620e-177
Identity = 264/349 (75.64%), Postives = 307/349 (87.97%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFPASNTPIFFVDY TPEGTDILET +RV ELE++VM MP +RHLTTT+GGGAQRFTL YSPEDRYASYAQLIVET++KT Q  RMA+VE+ LER H + D+KIAPLEVGP+PKAK+EAR YGSDP  LR+L  ++EA+FRD P  TSVR SWRNRVQ IEPVFLEDTARRLGV+R +LA+TLA++T+G ++G YRDGS+LIPIVARA+ EQRHDVD+LGSLNVWS E+ RYI ADQV+  I T+VADPLI+RR+R+RMLAVY EP PL  VTAASVL  +R  VEALE+P+GYRLEWGGE+ET+ EAQSGLF+SLPLGLV+MFIITVVLFNN+RQPLAIWSLVPLT+I
Sbjct:  545 FFPASNTPIFFVDYWTPEGTDILETAKRVGELEDAVMEMPDIRHLTTTIGGGAQRFTLPYSPEDRYASYAQLIVETDDKTSQHARMADVERELERRHPEADFKIAPLEVGPSPKAKIEARLYGSDPQTLRRLAGEIEAIFRDEPLATSVRHSWRNRVQAIEPVFLEDTARRLGVSRSDLADTLAMNTTGVRLGTYRDGSDLIPIVARAVPEQRHDVDDLGSLNVWSAERGRYIPADQVIERIDTEVADPLILRRDRQRMLAVYAEPDPLRDVTAASVLERVRSDVEALELPSGYRLEWGGEHETSSEAQSGLFSSLPLGLVIMFIITVVLFNNWRQPLAIWSLVPLTVI 893          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A0P7CZR3_9GAMM (Multidrug transporter AcrB n=23 Tax=Bacteria TaxID=2 RepID=A0A0P7CZR3_9GAMM)

HSP 1 Score: 417 bits (1071), Expect = 2.320e-134
Identity = 202/349 (57.88%), Postives = 265/349 (75.93%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFP ++TP+FFVD   PEGTD+L T+ R+++LE  V+ M  V H+T+  GGGAQRFTLTYSPED YAS+ QLIVET+++  +  RM +V +++  ++ +++YK+  L+VGP+ KA LEAR YG DPAVLRQL  +V ++F + P   S+R SWRNRV  IEP FL+D ARR+GVTR+ L   L +++ G  VG+YR+GS LIPI+ R    QR D+D L SLNVWS+EQ  Y+ A  VM  + T++ DPLI RR+R+RMLAVY EP PLSG TAASVL  IRP++EA+E+P GY LEWGGEYET+ EAQ  LF+SLP+GL+ MF+ITV+LF+N RQ LAIWS+VPLT+I
Sbjct:  553 FFPDASTPLFFVDVWMPEGTDVLATEARIADLEQQVLKMDKVNHVTSVTGGGAQRFTLTYSPEDSYASFGQLIVETQDRASREARMEKVIRLVRAEYPEVEYKVQALQVGPSAKASLEARLYGEDPAVLRQLAGKVRSVFEEEPLADSIRLSWRNRVNRIEPEFLDDQARRVGVTRDSLHQALLINSDGESVGVYREGSELIPILLRGEERQRFDLDTLASLNVWSDEQETYVPAGSVMGPLETELRDPLIKRRDRQRMLAVYAEPMPLSGETAASVLGRIRPKIEAIELPEGYHLEWGGEYETSSEAQEALFSSLPMGLLGMFVITVLLFSNLRQALAIWSIVPLTLI 901          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: A0A3N9TXT0_9GAMM (Efflux RND transporter permease subunit n=13 Tax=Halomonadaceae TaxID=28256 RepID=A0A3N9TXT0_9GAMM)

HSP 1 Score: 412 bits (1059), Expect = 1.040e-132
Identity = 202/349 (57.88%), Postives = 258/349 (73.93%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFP + TP+FF D   PEGTD+LET+R ++ LE  V+ M  V  +T+ +GGGAQRFTLTY+PEDRYAS+ QLIVETE++  +  RM EV + L  D   + YK+  L+VGP+ KA +EAR YG DP  L +LG +V  +F+D P   S+R SW NR  VI P FLE  ARR+GVTR+ L   L L+  G QVG+YR+GS LIPIV R+  +QRHD+DNL ++NVWSEEQ RY++A  V+ ++ T++ DPLI RR+R RMLAVY EP PLSG TAASVLA +RP+VEA+E+P GY +EWGGEYETA +AQ  L +SLP+GL+ MFIITV+LF   RQ LAIWS+VPL +I
Sbjct:  547 FFPDATTPLFFADVWLPEGTDVLETERTIARLETQVLEMQDVTRVTSVIGGGAQRFTLTYAPEDRYASFGQLIVETEDRASREARMKEVIETLREDFPRVQYKVQALQVGPSAKASIEARIYGDDPETLHRLGAEVRGIFQDEPMTDSIRLSWSNRESVIVPEFLEQQARRVGVTRDALHQALRLNNDGEQVGVYREGSELIPIVMRSREDQRHDIDNLSAVNVWSEEQGRYLSAGNVLGELHTELRDPLIKRRDRRRMLAVYAEPMPLSGETAASVLARLRPQVEAIELPPGYAIEWGGEYETASDAQKALLSSLPMGLLGMFIITVLLFGRLRQALAIWSIVPLMLI 895          
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Match: UPI00047FC6C5 (efflux RND transporter permease subunit n=2 Tax=Halomonas TaxID=2745 RepID=UPI00047FC6C5)

HSP 1 Score: 409 bits (1052), Expect = 1.290e-131
Identity = 203/349 (58.17%), Postives = 263/349 (75.36%), Query Frame = 1
Query:    1 FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVGGGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDIDYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVRTSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSNLIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPLIMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGGEYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII 1047
            FFP + TP+FFVD   PEGTD+LET  +V+ LE +V+ M  V ++T+ +GGGAQRFTLTY+PED YAS+ QLIVET ++  +  RM EV ++L RD   I YK+  L+VGP+ KA LEAR YG D  VLR+L ++V+ +F   P + SVR SW NRV VIEP FL++ ARR+GVTR  L   L ++  G QVG+YR+GS LIPI+ RA   QRHD+D+L +LNVWS+EQ  Y++A  V+  + T   DPLI RR+R+RMLA+Y EP PLSG TAASVLA +RP VEA+E+P GYRLEWGGEY+T+GEA+  LF+SLPLGL+ MF+ITV+LF + RQ LAIWS+VPLT++
Sbjct:  549 FFPDATTPLFFVDVWLPEGTDVLETDAQVARLEQAVLDMDAVENVTSVIGGGAQRFTLTYAPEDSYASFGQLIVETTDRDSREARMEEVIRLLRRDFPRIQYKVKALQVGPSSKASLEARLYGPDAEVLRRLADRVQGVFEAEPLVDSVRLSWSNRVNVIEPAFLDEQARRVGVTRAALHQALLINNDGEQVGVYREGSELIPILLRAEESQRHDLDDLHALNVWSDEQASYVSAGTVLGPLETHPRDPLIKRRDRQRMLAIYAEPMPLSGETAASVLARLRPEVEAIELPPGYRLEWGGEYQTSGEAKQALFSSLPLGLLGMFVITVLLFASLRQALAIWSIVPLTLV 897          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14818.2813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D5LYG7_9GAMM2.750e-21590.54Acriflavin resistance protein n=43 Tax=Halomonadac... [more]
A0A5J6LAG9_9GAMM3.310e-21187.97Efflux RND transporter permease subunit n=1 Tax=Ni... [more]
A0A060B416_9GAMM5.470e-20285.39Multidrug transporter AcrB n=18 Tax=Halomonas TaxI... [more]
A0A7C9NPX9_9GAMM5.450e-19281.09Efflux RND transporter permease subunit n=2 Tax=Ha... [more]
A0A3T1DYA4_9GAMM1.500e-18991.36Uncharacterized protein n=1 Tax=Halomonas olivaria... [more]
A0A368TZJ3_9GAMM1.590e-18881.38AcrB/AcrD/AcrF family protein n=2 Tax=Halomonas Ta... [more]
A0A1G8R4H1_9GAMM8.620e-17775.64Multidrug efflux pump subunit AcrB n=1 Tax=Halomon... [more]
A0A0P7CZR3_9GAMM2.320e-13457.88Multidrug transporter AcrB n=23 Tax=Bacteria TaxID... [more]
A0A3N9TXT0_9GAMM1.040e-13257.88Efflux RND transporter permease subunit n=13 Tax=H... [more]
UPI00047FC6C51.290e-13158.17efflux RND transporter permease subunit n=2 Tax=Ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14818contigE-siliculosus-1a_F_contig14818:3..1049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1047
Model size1047
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.V
EggNOG OGs1MU48@1224,1RMBN@1236,1XHXU@135619,COG0841@1,COG0841@2
EggNOG free text desc.Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Seed eggNOG ortholog1415755.JQLV01000001_gene3217
Seed ortholog evalue4.5e-178
Seed ortholog score630.6
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.7407389-CDS-E-siliculosus-1a_F_contig14818:2..10491622927994.7407389-CDS-E-siliculosus-1a_F_contig14818:2..1049Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14818 3..1049 +
1696318765.782534-CDS-E-siliculosus-1a_F_contig14818:2..10491696318765.782534-CDS-E-siliculosus-1a_F_contig14818:2..1049Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14818 3..1049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14818.2813.1prot_E-siliculosus-1a_F_contig14818.2813.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14818 3..1049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14818.2813.1

>prot_E-siliculosus-1a_F_contig14818.2813.1 ID=prot_E-siliculosus-1a_F_contig14818.2813.1|Name=mRNA_E-siliculosus-1a_F_contig14818.2813.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=349bp
FFPASNTPIFFVDYRTPEGTDILETQRRVSELENSVMAMPGVRHLTTTVG
GGAQRFTLTYSPEDRYASYAQLIVETENKTIQRERMAEVEQVLERDHSDI
DYKIAPLEVGPAPKAKLEARFYGSDPAVLRQLGEQVEAMFRDTPTMTSVR
TSWRNRVQVIEPVFLEDTARRLGVTREELANTLALSTSGSQVGIYRDGSN
LIPIVARAISEQRHDVDNLGSLNVWSEEQRRYITADQVMSDITTQVADPL
IMRRNRERMLAVYGEPHPLSGVTAASVLAEIRPRVEALEIPAGYRLEWGG
EYETAGEAQSGLFASLPLGLVMMFIITVVLFNNFRQPLAIWSLVPLTII
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mRNA from alignment at E-siliculosus-1a_F_contig14818:3..1049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14818.2813.1 ID=mRNA_E-siliculosus-1a_F_contig14818.2813.1|Name=mRNA_E-siliculosus-1a_F_contig14818.2813.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1047bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14818:3..1049+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCTTCCCAGCCTCTAATACGCCGATTTTTTTTGTTGATTACCGCACCCC CGAAGGAACCGATATCCTTGAGACTCAGCGCCGCGTAAGTGAGTTGGAAA ACAGCGTGATGGCGATGCCTGGCGTTCGCCACTTGACCACCACCGTCGGC GGTGGTGCGCAGCGTTTTACCCTTACGTACTCTCCAGAAGACCGCTACGC AAGCTACGCTCAGTTGATTGTCGAAACCGAGAATAAAACTATCCAACGCG AACGCATGGCTGAGGTTGAGCAAGTGCTGGAGCGCGATCACAGTGATATC GACTATAAAATTGCGCCGCTGGAAGTTGGCCCTGCACCGAAAGCCAAACT AGAGGCGCGCTTTTACGGCAGCGACCCTGCAGTGCTACGTCAGTTAGGCG AGCAGGTCGAAGCTATGTTCCGCGATACGCCGACCATGACCAGTGTGCGC ACCAGTTGGCGTAATCGTGTGCAAGTCATTGAACCGGTGTTTCTGGAAGA TACCGCAAGGCGGTTAGGCGTCACCCGGGAGGAATTAGCCAACACACTTG CTTTAAGCACAAGCGGCAGCCAAGTGGGGATTTATCGCGATGGTAGCAAC CTGATTCCTATTGTGGCGCGGGCTATTTCTGAGCAACGGCACGATGTGGA CAACCTGGGTTCGCTGAACGTATGGAGCGAAGAGCAAAGGCGCTATATCA CCGCCGACCAAGTCATGAGCGACATCACTACCCAGGTCGCGGATCCGCTC ATTATGCGCCGCAATCGCGAGCGTATGCTGGCTGTCTATGGCGAGCCGCA TCCATTAAGCGGTGTAACAGCGGCCAGCGTATTGGCGGAAATTCGACCAC GTGTAGAAGCGCTGGAAATACCCGCAGGCTATCGATTGGAGTGGGGGGGG GAGTATGAAACTGCTGGTGAAGCGCAGAGTGGGTTATTCGCATCGCTGCC GTTAGGGCTGGTGATGATGTTTATTATCACCGTGGTGCTGTTCAACAACT TCCGCCAGCCGTTGGCGATTTGGTCGCTTGTACCGTTAACCATTATT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14818:3..1049+

>mRNA_E-siliculosus-1a_F_contig14818.2813.1 ID=mRNA_E-siliculosus-1a_F_contig14818.2813.1|Name=mRNA_E-siliculosus-1a_F_contig14818.2813.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2094bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14818:3..1049+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCTTCCCAGCCTCTAATACGCCGATTTTTTTTGTTGATTACCGCACCCC
CGAAGGAACCGATATCCTTGAGACTCAGCGCCGCGTAAGTGAGTTGGAAA
ACAGCGTGATGGCGATGCCTGGCGTTCGCCACTTGACCACCACCGTCGGC
GGTGGTGCGCAGCGTTTTACCCTTACGTACTCTCCAGAAGACCGCTACGC
AAGCTACGCTCAGTTGATTGTCGAAACCGAGAATAAAACTATCCAACGCG
AACGCATGGCTGAGGTTGAGCAAGTGCTGGAGCGCGATCACAGTGATATC
GACTATAAAATTGCGCCGCTGGAAGTTGGCCCTGCACCGAAAGCCAAACT
AGAGGCGCGCTTTTACGGCAGCGACCCTGCAGTGCTACGTCAGTTAGGCG
AGCAGGTCGAAGCTATGTTCCGCGATACGCCGACCATGACCAGTGTGCGC
ACCAGTTGGCGTAATCGTGTGCAAGTCATTGAACCGGTGTTTCTGGAAGA
TACCGCAAGGCGGTTAGGCGTCACCCGGGAGGAATTAGCCAACACACTTG
CTTTAAGCACAAGCGGCAGCCAAGTGGGGATTTATCGCGATGGTAGCAAC
CTGATTCCTATTGTGGCGCGGGCTATTTCTGAGCAACGGCACGATGTGGA
CAACCTGGGTTCGCTGAACGTATGGAGCGAAGAGCAAAGGCGCTATATCA
CCGCCGACCAAGTCATGAGCGACATCACTACCCAGGTCGCGGATCCGCTC
ATTATGCGCCGCAATCGCGAGCGTATGCTGGCTGTCTATGGCGAGCCGCA
TCCATTAAGCGGTGTAACAGCGGCCAGCGTATTGGCGGAAATTCGACCAC
GTGTAGAAGCGCTGGAAATACCCGCAGGCTATCGATTGGAGTGGGGGGGG
GAGTATGAAACTGCTGGTGAAGCGCAGAGTGGGTTATTCGCATCGCTGCC
GTTAGGGCTGGTGATGATGTTTATTATCACCGTGGTGCTGTTCAACAACT
TCCGCCAGCCGTTGGCGATTTGGTCGCTTGTACCGTTAACCATTATTTTC
TTCCCAGCCTCTAATACGCCGATTTTTTTTGTTGATTACCGCACCCCCGA
AGGAACCGATATCCTTGAGACTCAGCGCCGCGTAAGTGAGTTGGAAAACA
GCGTGATGGCGATGCCTGGCGTTCGCCACTTGACCACCACCGTCGGCGGT
GGTGCGCAGCGTTTTACCCTTACGTACTCTCCAGAAGACCGCTACGCAAG
CTACGCTCAGTTGATTGTCGAAACCGAGAATAAAACTATCCAACGCGAAC
GCATGGCTGAGGTTGAGCAAGTGCTGGAGCGCGATCACAGTGATATCGAC
TATAAAATTGCGCCGCTGGAAGTTGGCCCTGCACCGAAAGCCAAACTAGA
GGCGCGCTTTTACGGCAGCGACCCTGCAGTGCTACGTCAGTTAGGCGAGC
AGGTCGAAGCTATGTTCCGCGATACGCCGACCATGACCAGTGTGCGCACC
AGTTGGCGTAATCGTGTGCAAGTCATTGAACCGGTGTTTCTGGAAGATAC
CGCAAGGCGGTTAGGCGTCACCCGGGAGGAATTAGCCAACACACTTGCTT
TAAGCACAAGCGGCAGCCAAGTGGGGATTTATCGCGATGGTAGCAACCTG
ATTCCTATTGTGGCGCGGGCTATTTCTGAGCAACGGCACGATGTGGACAA
CCTGGGTTCGCTGAACGTATGGAGCGAAGAGCAAAGGCGCTATATCACCG
CCGACCAAGTCATGAGCGACATCACTACCCAGGTCGCGGATCCGCTCATT
ATGCGCCGCAATCGCGAGCGTATGCTGGCTGTCTATGGCGAGCCGCATCC
ATTAAGCGGTGTAACAGCGGCCAGCGTATTGGCGGAAATTCGACCACGTG
TAGAAGCGCTGGAAATACCCGCAGGCTATCGATTGGAGTGGGGGGGGGAG
TATGAAACTGCTGGTGAAGCGCAGAGTGGGTTATTCGCATCGCTGCCGTT
AGGGCTGGTGATGATGTTTATTATCACCGTGGTGCTGTTCAACAACTTCC
GCCAGCCGTTGGCGATTTGGTCGCTTGTACCGTTAACCATTATT
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