mRNA_E-siliculosus-1a_F_contig1481.2812.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1481.2812.1 vs. uniprot
Match: A0A6H5L244_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L244_9PHAE) HSP 1 Score: 579 bits (1492), Expect = 2.250e-200 Identity = 286/385 (74.29%), Postives = 311/385 (80.78%), Query Frame = 2
Query: 26 MRWQCFSGLLALAASQEFEVGGQVSMASTFIELARERFEARNGRPATSEESNFAFDSLQLIRVPKAGSTEASAIARQLGGCVPRGPCCAFPKNPAGVCPHGAQLCPAVTGCLEHHMNPTRVTMLEDPNVFSMSNIRGVVDRMVSGFFYVYQHTPPCARKDDVDYESCFETMINAPEFQNIAARMMSGHHPYNGSFKVCMDKDQDVVGAS-CVEDLESAIRGACNLNFVTMCEAWNSSVLLLFETLPWLGPTEDFFPAPEHQHRQ-----------HAEEAAASSHWRQNTGAKHEEGIKHITPELREAARSANAVDEALHEFISAKFCERLREAGILQHPLVAAELVTYEPLDHRCNDEAWAKGTLERFAPITPEECRLYLPFEK 1144
MRW CF GLL +AASQ F+ G Q S ASTF+ELARERFEARNGRPAT EE+ FAFD LQLIRVPKAGS+EAS IAR+LGGCVPRGPCC FP +P G CP +CP VTGC H M+PT MLEDP+VFSM+NIRGVVDRMVSGFFY H+PPCA KDDVDYE+CF+ MI +FQNIAARM+SGH Y G ++CMDKDQD G CVEDLES IRGACNLNFVTMCE W+SSVLLLFETLPWLGPT DFFPAP+ QHRQ E AAS RQNTGAKHEEGIKHITPELREAA SANAVDEALHEFISAKFCERLRE G+L HPLV+A+L TYEPLDHRCNDE WAK TLERFAPITP+ECRLY PF+K
Sbjct: 1 MRWCCFPGLLVIAASQAFDAGEQESTASTFLELARERFEARNGRPATFEENAFAFDGLQLIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMCPMVTGCTSHRMDPTTTAMLEDPSVFSMANIRGVVDRMVSGFFYTDPHSPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGPTADFFPAPKRQHRQLPSIGDADAPAPLEVPAASGRSRQNTGAKHEEGIKHITPELREAASSANAVDEALHEFISAKFCERLRETGLLHHPLVSAQLATYEPLDHRCNDETWAKETLERFAPITPQECRLYEPFDK 385
BLAST of mRNA_E-siliculosus-1a_F_contig1481.2812.1 vs. uniprot
Match: D7FWY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY0_ECTSI) HSP 1 Score: 561 bits (1446), Expect = 3.310e-193 Identity = 278/383 (72.58%), Postives = 308/383 (80.42%), Query Frame = 2
Query: 17 ACGMRWQCFSGLLALAASQEFEVGGQVSMASTFIELARERFEARNGRPATSEESNFAFDSLQLIRVPKAGSTEASAIARQLGGCVPRGPCCAFPKNPAGVCPHGAQLCPAVTGCLEHHMNPTRVTMLEDPNVFSMSNIRGVVDRMVSGFFYVYQHTPPCARKDDVDYESCFETMINAPEFQNIAARMMSGHHPYNGSFKVCMDKDQDVVG-ASCVEDLESAIRGACNLNFVTMCEAWNSSVLLLFETLPWLGPTEDFFPAPEHQHRQ-----HAEEAAASSHWRQNTGAKHEEGIKHITPELREAARSANAVDEALHEFISAKFCERLREAGILQHPLVAAELVTYEPLDHRCNDEAWAKGTLERFAPITPEECRLYLPFEKQ 1147
A GM+W+ F GLLALAAS EF VGGQ ASTF+ELARERFEARN R AT E FAFD LQL+RVPKAGS+EAS IAR+LGGCVPRGPCC P +P G CP +CPAV GC H M+P R TMLEDP+VFSMSN+R VVDRMVSGF Y H+P C R DDVDYESCFE M+N +FQN+AARM+SGH Y GS K+CM+KDQDV G A+C EDLES I+GACNLNFVTMCEAW SSVLLLFETL WL PT DFFPAP H+HRQ A+E AA+ R NTG+KHEEGIKHITPELR+AARSANAVDEALHEF+SAKFCERLRE G+L HPLV AEL TYEPL+ RCNDE WAK TLERFAPI P+ECRLY PF+KQ
Sbjct: 17 AGGMQWRSFPGLLALAASHEFNVGGQDVAASTFLELARERFEARNVRSATLEGDTFAFDRLQLVRVPKAGSSEASVIARRLGGCVPRGPCCMMPGHPPGSCPSEGLMCPAVLGCTAHMMDPKRNTMLEDPSVFSMSNVRDVVDRMVSGFLYTQPHSPLCTRTDDVDYESCFEEMMNTTKFQNVAARMVSGHDAYEGSVKLCMNKDQDVGGEAACAEDLESVIKGACNLNFVTMCEAWASSVLLLFETLRWLEPTADFFPAPRHRHRQLSSSEDAKEGAAAGPQRHNTGSKHEEGIKHITPELRDAARSANAVDEALHEFVSAKFCERLRETGLLHHPLVGAELATYEPLERRCNDETWAKDTLERFAPIMPDECRLYQPFDKQ 399
BLAST of mRNA_E-siliculosus-1a_F_contig1481.2812.1 vs. uniprot
Match: A0A6H5KAL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL5_9PHAE) HSP 1 Score: 509 bits (1312), Expect = 1.710e-172 Identity = 264/417 (63.31%), Postives = 294/417 (70.50%), Query Frame = 2
Query: 98 SMASTFIELARERFEARNGRPATSEESNFAFDSLQ-----LIRVPKAGSTEASAIARQLGGCVPRGPCCAFPKNPAGVCPHGAQLCPAVTGCLEHHMNPTRVTMLEDPNVFSMSNIRGVVDRMVSGFFYVYQHTPPCARKDDVDYESCFETMINAPEFQNIAARMMSGHHPYNGSFKVCMDKDQDVVG-ASCVEDLESAIRGACNLNFVTMCEAWNSSVLLLFETLPWLGPTEDFFPAPEHQHRQ---------------HAEEAAASSHWRQNTGAKHEEGIKHITPELREAARSANAVDEALHEFISAKFCERLREAGILQHPLVAAELVTYEPLDHR----------------------------------------------CNDEAWAKGTLERFAPITPEECRLYLPFEKQ 1147
S ASTF+ELARERFEARNGRPAT EESNF+ D LQ L+ VPKAGS+EAS +AR+LGGCVPRGPCC P +P G CP +CPAV GC H M+P R TMLEDP+VFSMSNIR VVDRMVSGF Y H+P C R DDVDYESCFE M+N +FQN+AARM+SGH Y+ S K+CM+KDQDV G A+C EDLES ++GACNLNFVTMCEAW SSVLLLFETLPWL PT DFFPAP H+H Q A+E+AAS RQNTGAKHEEG+KHITPELR+AARSANAVDEALHE +SAKFCERLREAG+L HPLV AEL TYEPL+HR CNDE WAK TLERFAPI P+ECRLY PFEKQ
Sbjct: 13 STASTFLELARERFEARNGRPATFEESNFSLDRLQGLLRMLMLVPKAGSSEASVVARRLGGCVPRGPCCMMPGHPPGSCPSEGLMCPAVLGCTAHKMDPKRNTMLEDPSVFSMSNIRDVVDRMVSGFLYTQPHSPLCTRTDDVDYESCFEEMMNTTKFQNVAARMVSGHDAYDSSIKLCMNKDQDVGGEAACAEDLESVMKGACNLNFVTMCEAWGSSVLLLFETLPWLEPTADFFPAPRHRHHQCGCDLGRVTPVYSSEDAKESAASGPQRQNTGAKHEEGMKHITPELRDAARSANAVDEALHELVSAKFCERLREAGLLHHPLVVAELATYEPLEHRYAIGFVLCQAFGWGEADLRVWPCMIRCSRSETPSFFALPLSVSVPRCNDETWAKDTLERFAPIMPDECRLYQPFEKQ 429
BLAST of mRNA_E-siliculosus-1a_F_contig1481.2812.1 vs. uniprot
Match: D7G3X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X3_ECTSI) HSP 1 Score: 154 bits (388), Expect = 1.460e-40 Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 2
Query: 209 RVPKAGSTEASAIARQLGGCVPRGPCCAFPKNPAGVCPHGAQLCPAVTGCLEHHMNPTRVTMLEDPNVFSMSNIRGVVDRMVSGFFYVYQHTPPCARKDDV 511
RVPKAGS+EAS IAR+LGGCVPRGPCCAFP +P G CP +CP VTGC+ H+MN R MLEDP+VFSM+NIRGVV+RMVSGF Y H+PPCAR D+V
Sbjct: 4 RVPKAGSSEASVIARRLGGCVPRGPCCAFPGDPPGSCPLEGLMCPMVTGCVGHNMNQRRTMMLEDPSVFSMTNIRGVVNRMVSGFLYTKSHSPPCARTDNV 104 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1481.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1481.2812.1 >prot_E-siliculosus-1a_F_contig1481.2812.1 ID=prot_E-siliculosus-1a_F_contig1481.2812.1|Name=mRNA_E-siliculosus-1a_F_contig1481.2812.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=375bp MRWQCFSGLLALAASQEFEVGGQVSMASTFIELARERFEARNGRPATSEEback to top mRNA from alignment at E-siliculosus-1a_F_contig1481:3582..30515+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1481.2812.1 ID=mRNA_E-siliculosus-1a_F_contig1481.2812.1|Name=mRNA_E-siliculosus-1a_F_contig1481.2812.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=26934bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1481:3582..30515+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1481:3582..30515+ >mRNA_E-siliculosus-1a_F_contig1481.2812.1 ID=mRNA_E-siliculosus-1a_F_contig1481.2812.1|Name=mRNA_E-siliculosus-1a_F_contig1481.2812.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2250bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1481:3582..30515+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |