mRNA_E-siliculosus-1a_F_contig1480.2808.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1480.2808.1
Unique NamemRNA_E-siliculosus-1a_F_contig1480.2808.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1480.2808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1480contigE-siliculosus-1a_F_contig1480:22114..25278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size147
Model size184
Exons2
Ec32 orthologEc-07_005230.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1480.2808.1prot_E-siliculosus-1a_F_contig1480.2808.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1480 22114..25242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.2824824-CDS-E-siliculosus-1a_F_contig1480:22113..222291622927994.2824824-CDS-E-siliculosus-1a_F_contig1480:22113..22229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1480 22114..22229 +
1696318765.5461063-CDS-E-siliculosus-1a_F_contig1480:22113..222291696318765.5461063-CDS-E-siliculosus-1a_F_contig1480:22113..22229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1480 22114..22229 +
1622927994.2968695-CDS-E-siliculosus-1a_F_contig1480:25211..252421622927994.2968695-CDS-E-siliculosus-1a_F_contig1480:25211..25242Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1480 25212..25242 +
1696318765.5581627-CDS-E-siliculosus-1a_F_contig1480:25211..252421696318765.5581627-CDS-E-siliculosus-1a_F_contig1480:25211..25242Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1480 25212..25242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.308936-UTR-E-siliculosus-1a_F_contig1480:25242..252781622927994.308936-UTR-E-siliculosus-1a_F_contig1480:25242..25278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1480 25243..25278 +
1696318765.5701783-UTR-E-siliculosus-1a_F_contig1480:25242..252781696318765.5701783-UTR-E-siliculosus-1a_F_contig1480:25242..25278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1480 25243..25278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1480.2808.1

>prot_E-siliculosus-1a_F_contig1480.2808.1 ID=prot_E-siliculosus-1a_F_contig1480.2808.1|Name=mRNA_E-siliculosus-1a_F_contig1480.2808.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=49bp
YRLGALAAACPGCLLLPSWRQLNRAENLTRARTRPFFGRPHTPDRPAE*
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mRNA from alignment at E-siliculosus-1a_F_contig1480:22114..25278+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1480.2808.1 ID=mRNA_E-siliculosus-1a_F_contig1480.2808.1|Name=mRNA_E-siliculosus-1a_F_contig1480.2808.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1480:22114..25278+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACAGGCTGGGAGCGCTGGCTGCTGCCTGCCCTGGATGTTTACTGCTGCC
TTCGTGGAGACAGCTAAATAGGGCGGAAAACCTGACTCGAGCGCGAACAC
GTCCGTTCTTTGGAAGGTGCGCGGGCGTCTGGATTTGTTATCTGTTTTTC
CTATGTCCAGTGTAACACGTGTTTGAACCCGGGAACCTGTACCGCAGGGG
GTCACACTTTTGTTTAGAGAGCGTAGCTGTTGTTGCGGACTTGACTCGAA
CTTCCAGTTTGGCAGCCACAGCGAGCCGTGAGCTTTGCTTCGAGAAAACC
TCCGTTGTATCGCTGTTGGCGAGGAACGCCGAAATATTGGACGGAGGGCG
GAACAGACAAAGCTCGGTGTGTTGTGTTAGAGTTCGTGTCCATCTCCGAC
GTTGTCCGTTGGTTGATTTGGTTCGGTGTGTTGCTTGGATGTCACCGAAT
GGACATGTGTACGCACCCCGTCGACGTTGAGATCGACCGCTGTCGGCATG
TACCAGCTCTAGTGTTCCCATAACCTGCACCTTCGACAGCACATTACACG
TGAGATGTATGCATGGACTATTTTCTTGTTCGCGGTGTGTGAGTTGGTCG
TCGACGGCAGCACCAGCATCTGCAACGTATGCACGCATGGCGTATGTATG
TAGGCCGGGCGGGAGGGTCCGTTACGTATGCATACTCTGCCCCTGAGTGG
TGCCCTGCTGGCGTGCTGTTGGCCCCTGCATCACAGTTGTATCGCGGTAT
GTACTTGCGGGGACGGCACAAGCGCAGGTCGTTCTGTCCAAACGCACCCG
CCTTTCCCGCCCCTAATCAAGTCAATACTGTACTGCAGGAGAGGCGGCGA
TACCATAAGAAGCATGCAGGAATATGTGCAGCAGTTTCCCCTCATTGCTT
TTCGCACGTATGGCCCTGCAGGCGGTAGGCACAGGCGCGGATAGTTCATA
CCAATGGTAACCAATAGTACATACCGTTTCGTGCCGGCTGCGAAATATCA
GGAGGGGTTTGGAAAGATCTACACAACACTGCCGAGGGAAATCCTCGATT
GGTTCAGAAACGATGCGGCTGAAATACGTGTTGTGCACGGCGGTACGTTG
CTAACCACGGGGTAGACTAGAGGTCTCTTTCTGTCTCTGTCTCTCTCGGA
TCCTCGTTGTTCTTGGCGCATATGCATGGTGTGTCTGATATTCTGGGAAC
AATCTCAAGACGTCCCCGGAATGCATGCTTGGTATATCGGTCACTCTGTA
CCCGCGAAACACGATAAGGTGCGTTCATGAGTGTTTGTAGCGTTGGAACT
ACGGGACCCGTCGGTGCTTGTAACAAGCAGCTGGTAACAAGGGGGCTCAT
GGGAGGCAATCTGCAACTGGATTGGAGGGCTTTCTATTGTAGTCTACCCC
TGCTTCTTTTTTAAGTAGGATTTAGTCACTCGCGATATATATCAACCTTT
ACACCTCCGTGTAATATCGTTAGTCTGTGATACTATGTATTGGGTTAAAC
CATAATAAGTCACGCTTCGAGGCAAATACTTTTCTACATGTATGTATGAC
CTCCCTGAATGCTACGTTGATACAATCGACACTTTCGCCAAACTGGATTG
AGAGCTCCAAATAACACATGGGCGAGGTGACCGTAAAAAGCGGAGATATG
GCACCGGGTGCGATCGTTTTTACAAACATGTTCCTCATTTTGTGGTTTCG
CACCCCGATTGCGATCTCTCAGACCCGTGCCATCTCTCCGACCCCGGTGC
GGAAATGCAATTGAATCATTTCGTTGAGCTTTTCACCCCGGTGCGATCTC
TCCGACCGGGGCGATGCGCAAGAAAGCACACACAGCGGGTCATACAGGTG
CTCGGCCGTGTCGTGTGCACGCACCCCGGTGCCATCTCCTCAAGCGATGC
CATCTCTCCGCCTCGTTACGTGGTACCAGTGTATCTACAAGCAGGCCTGT
GCAGTGTAGGTACCGTAGGCTGGTGTGTAGCAGCTTTCCATGCAGCGAAT
GGTCATTGGGCGGGAGTCTAGCTATGATGGCGTGACAAGGACAGCAAACG
ATGTGGTTTCCACCTGAGGTACCGGTTCACGCGGTATCGTCAGGTTGTCT
CCCGCCTTCGTTCGGTCTTCCTCTGCGAACACCCCACGTACGCAAACAGT
AGTACATTGAAAATCGTTGTGTGCTTGGTTGTTTGTACGGTTGGCGACTT
CCGTATCAACCTACCAAACAAATACCAATAACTAGCATCCCGCGTGAACC
GCGACCGTTTAGTCATACCTCAAGGAGTGGCGCTCCACTGACACCGTCCC
CACATGTAAAAACCACGCGCTGTGCCTCTTTCCAGCAGCTCAACAACAGC
TCAATCTTGGATTTGGGGGTCGGCGAGATCGCACCCTGTGCGATCTCACC
GACCCTGGTGGGGAAATCGAATTACAGGAAATCATTCCATTCTTGGCTTC
TTTTTGCGCACCCAGGTGCCATCTCCCCGATCGGGGCTATCTCTTCGCAC
GGTAGCTGTCCGTGTGCCCTGTTGCGTGCTTGCGTGCTAGTAGAACAACG
TGGCACATCATGTCTACGGGACCTCTCCAAAAATTGCCGCCGTCCGACCC
TGCAATTCGAGTCGTATTTTCGACCGAAACCTGAATGGTCGTCGCCAACA
AAAATGGACAGGTGTGTGCTTTTGAGGCAATAGCGCGAAGCATGACCTAC
CTTGCCCAACCCCCACGAGCCGCTCAAATCCGGTTTTGTCGGAAGGGACG
CCAGCAGCATGAGCAACAATCCTACATATGCATAGTCAAGTAGCACGAAC
TCCCTTTTCCCTCAGCTTCATTTCGGCCTATACGTATGTACATGAAGTGC
GCATGAACTGCCACAAAGGCCCCCCACGACATATTCACATGCTCAACGGC
GTGTTCGCGTTTGTTTGTCCCACTGGCAAGACTGGCCCATTTTCATTGGT
AAGCCGGTTAGCGCCGCCGATGCCTACGTATCAAAGAGAGACTCACATGC
ACCCGCACACCGATCCTAACCCCAGAAACACCGTACACACACGCGCGCGT
ACCCGTGCCCCCGTTCGCGGTGCCCCTATTTGTCGTTGCCCTCTGCAGGC
CACATACTCCAGACCGACCGGCCGAGTGAGCTCATCGCTAGCAGCGGTGT
CAAACAAGCAAGAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1480:22114..25278+

>mRNA_E-siliculosus-1a_F_contig1480.2808.1 ID=mRNA_E-siliculosus-1a_F_contig1480.2808.1|Name=mRNA_E-siliculosus-1a_F_contig1480.2808.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1480:22114..25278+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACAGGCTGGGAGCGCTGGCTGCTGCCTGCCCTGGATGTTTACTGCTGCC
TTCGTGGAGACAGCTAAATAGGGCGGAAAACCTGACTCGAGCGCGAACAC
GTCCGTTCTTTGGAAGTACAGGCTGGGAGCGCTGGCTGCTGCCTGCCCTG
GATGTTTACTGCTGCCTTCGTGGAGACAGCTAAATAGGGCGGAAAACCTG
ACTCGAGCGCGAACACGTCCGTTCTTTGGAAGGCCACATACTCCAGACCG
ACCGGCCGAGTGAGCCACATACTCCAGACCGACCGGCCGAGTGA
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