mRNA_E-siliculosus-1a_F_contig148.2805.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig148.2805.1
Unique NamemRNA_E-siliculosus-1a_F_contig148.2805.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 1.270e-192
Identity = 275/276 (99.64%), Postives = 275/276 (99.64%), Query Frame = 2
Query:    8 MARAGAFVAIACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 835
            MARAGAFVA ACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA
Sbjct:    1 MARAGAFVAFACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 276          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA)

HSP 1 Score: 401 bits (1031), Expect = 7.730e-137
Identity = 212/275 (77.09%), Postives = 234/275 (85.09%), Query Frame = 2
Query:    8 MARAGAFVAIACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
            M ++ A   +A VG + AF       + A +R TSS L MA  NA+H+KDF IAPSILSADMAKLG+EVDNAM+AGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV N IDVHLMVSPVDRIVGDFAEAGAS+ITFHPEASPHVDRTL LIKS GCK+GLVFNPATPLD AKYVLDKVDIILLMSVNPGFGGQ+FIP+TLDKLREAR MIDESG+DIRLE+DGG    NIKEIAEAGADMFVAGSA+F NPRT E Y +TI K+R+ELA A I
Sbjct:    1 MVKSTAVAVLATVGVACAFAP-----ASAPSRPTSS-LRMA-NNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSGLVFNPATPLDFAKYVLDKVDIILLMSVNPGFGGQAFIPATLDKLREARAMIDESGFDIRLEIDGGVTQNNIKEIAEAGADMFVAGSAVFKNPRTVEAYTDTITKLRAELAAAQI 268          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA)

HSP 1 Score: 388 bits (997), Expect = 8.130e-132
Identity = 199/262 (75.95%), Postives = 218/262 (83.21%), Query Frame = 2
Query:   35 IACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELA 820
            +AC G +    V    V      +T   + MAA     KKDFWIAPSILSAD AKLGQEVDN ++AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTL LIKS GCK+GLVFNPATPL  A++VLDKVDIILLMSVNPGFGGQSFIP TL KL+EARKMIDESGYDIRLEVDGG GVANIK+IAEAGAD FVAGSAI  NPRT++ YK TID MR+ELA
Sbjct:    7 LACAGVAALATVAHGFVPPVPRSYTRGRMAMAA-----KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELA 263          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN)

HSP 1 Score: 380 bits (976), Expect = 1.770e-128
Identity = 186/227 (81.94%), Postives = 203/227 (89.43%), Query Frame = 2
Query:  152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
            KDF IAPSILSAD A+LG+EV N++SAGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTL LI+  GCKAGLVFNPATPLD  KYV+DKVDIILLMSVNPGFGGQSFIP+TLDK REARK+ID SGYDIRLE+DGG   ANIKE+AEAG DMFVAGSAIF +PRTEE+YK TID MR ELA A +
Sbjct:   43 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAKV 269          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A6S8QFJ5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8QFJ5_9STRA)

HSP 1 Score: 379 bits (974), Expect = 3.440e-128
Identity = 186/228 (81.58%), Postives = 204/228 (89.47%), Query Frame = 2
Query:  149 KKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
            +KDF IAPSILSAD AKLG EVD +++AGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIV DFA+AGAS+ITFHPEASPHVDRTL LI+S GCK+GLVFNPATPLD  KYV+DKVDIILLMSVNPGFGGQ+FIP+TLDK REARKMIDESGYDIRLE+DGG   ANIKE+AEAG DMFVAGSAIF +PRTEE YK+TID MR ELA A +
Sbjct:   41 EKDFLIAPSILSADFAKLGAEVDASLAAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVQDFADAGASYITFHPEASPHVDRTLQLIRSTGCKSGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQAFIPATLDKAREARKMIDESGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEAYKKTIDAMRDELAAAKV 268          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: L1JR28_GUITC (Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR28_GUITC)

HSP 1 Score: 364 bits (934), Expect = 4.290e-122
Identity = 172/228 (75.44%), Postives = 197/228 (86.40%), Query Frame = 2
Query:  152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 835
            KD+ IAPSILSAD AKLGQEVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK LR+HGVT PIDVHLMV PVDRI+GDF +AGAS+ITFHPEAS H+DRTL +I+  GCKAGLV NPAT LD+ KYV+DK+DIILLMSVNPGFGGQ FIPS L+K +EARK+ID SGYDIRLE+DGG  V NIK++AE G DMFVAGSAI   PRT++ YK TIDKMR +LA A +A
Sbjct:   49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAKVA 276          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA)

HSP 1 Score: 363 bits (933), Expect = 6.300e-122
Identity = 181/244 (74.18%), Postives = 208/244 (85.25%), Query Frame = 2
Query:   89 GASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELA 820
            G  TR + SSL M A+  +  KD+ IAPSILSA+ AKLG+EVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFA+AGA +ITFHPEAS H+DR+LGLIKS GCK+GLVFNPAT LD+AKYVLDKVDIILLMSVNPGFGGQSFIP   DK+++ARKMIDESGYDI+LE+DGG  V NIK+IAEAG DMFVAGSAI   PR ++ Y ETI  MR +LA
Sbjct:   28 GLGTRVSKSSLKMGAD--FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSGLVFNPATSLDYAKYVLDKVDIILLMSVNPGFGGQSFIP-IYDKIKQARKMIDESGYDIKLEIDGGVNVNNIKDIAEAGVDMFVAGSAILKEPRNKDAYAETIKTMREQLA 268          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S0LBR0_9EUKA (Ribulose-phosphate 3-epimerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBR0_9EUKA)

HSP 1 Score: 358 bits (919), Expect = 4.610e-120
Identity = 173/226 (76.55%), Postives = 199/226 (88.05%), Query Frame = 2
Query:  155 DFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
            ++ IAPSILSAD AKLG+EVD  ++AGAD VHFDVMDNHYVPNLTIGPLVCK LR+HG+T PIDVHLMVSPVDRI+GDFA+AGAS+ITFHPEA+ H+DR+L L+++ GCK+GLVFNPAT LD  KYV+DKVDI+LLMSVNPGFGGQSFIP+TLDKLREAR MIDESG+DI LE+DGG G ANI E+A AGADMFVAGSAIFN P    +YKETIDKMR+ELA   +
Sbjct:   32 EYLIAPSILSADFAKLGEEVDTVLAAGADTVHFDVMDNHYVPNLTIGPLVCKALRNHGITAPIDVHLMVSPVDRIIGDFADAGASYITFHPEATTHIDRSLQLVRAAGCKSGLVFNPATSLDCLKYVMDKVDIVLLMSVNPGFGGQSFIPATLDKLREARAMIDESGFDISLEIDGGVGPANIAEVAAAGADMFVAGSAIFNTP----DYKETIDKMRAELATVPV 253          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S0M6B2_9CRYP (Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6B2_9CRYP)

HSP 1 Score: 356 bits (914), Expect = 2.290e-119
Identity = 171/228 (75.00%), Postives = 199/228 (87.28%), Query Frame = 2
Query:  152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 835
            KDF IAPSILSA+ AKLG+EVDN ++AGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMVSPVDRI+GDF +AGAS+ITFHPEA+ HVDR+L L+++ GCK+GLVFNP+T LD+ KYV+DKVDIILLMSVNPGFGGQ FIP+ LDK REARKMIDESG+DIRLE+DGG  V NIK++AEAG D FVAGSAI   PRT++ Y+ TI++MR+ LA A  A
Sbjct:   25 KDFLIAPSILSANFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVSPVDRIIGDFVDAGASYITFHPEATNHVDRSLSLVRAAGCKSGLVFNPSTSLDYLKYVMDKVDIILLMSVNPGFGGQKFIPNVLDKAREARKMIDESGFDIRLEIDGGVTVDNIKDVAEAGVDFFVAGSAILKAPRTKDAYRSTINQMRTNLAAAKRA 252          
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S2E7A3_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7A3_9STRA)

HSP 1 Score: 356 bits (913), Expect = 4.010e-119
Identity = 174/227 (76.65%), Postives = 195/227 (85.90%), Query Frame = 2
Query:  152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
            KD+ IAPSILSAD AKLG+EVDN + AGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD  +GDF +AGAS+ITFHPEA+ HVDR+L LIK+ GCKAGLVFNPAT LD A+YV+DK+DIILLMSVNPGFGGQ+FIP+TLDK R ARKMIDE+G D RLE+DGG  V NIKE+ EAG DMFVAGSAI   PRT E YK TID+MR ELA A +
Sbjct:   37 KDYLIAPSILSADFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHVDRSLQLIKAGGCKAGLVFNPATSLDIAEYVMDKLDIILLMSVNPGFGGQAFIPATLDKARLARKMIDEAGVDCRLEIDGGVKVDNIKEVCEAGVDMFVAGSAILKEPRTVEAYKATIDEMRKELAAAEM 263          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBH8_ECTSI1.270e-19299.64Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus ... [more]
A0A835YRZ4_9STRA7.730e-13777.09Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema m... [more]
W7TD18_9STRA8.130e-13275.95Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsida... [more]
F0YLQ5_AURAN1.770e-12881.94Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus... [more]
A0A6S8QFJ5_9STRA3.440e-12881.58Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas... [more]
L1JR28_GUITC4.290e-12275.44Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia ... [more]
A0A7S2UWQ6_9STRA6.300e-12274.18Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa ... [more]
A0A7S0LBR0_9EUKA4.610e-12076.55Ribulose-phosphate 3-epimerase n=1 Tax=Coccolithus... [more]
A0A7S0M6B2_9CRYP2.290e-11975.00Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas... [more]
A0A7S2E7A3_9STRA4.010e-11976.65Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum bri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig148contigE-siliculosus-1a_F_contig148:58118..61121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size831
Model size1240
Exons3
Ec32 orthologEc-27_003930.1
Ec32 ortholog descriptionribulose-phosphate 3-epimerase
Hectar predicted targeting categorychloroplast
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EC5.1.3.1
EggNOG OGsCOG0036@1,KOG3111@2759
EggNOG free text desc.ribulose-phosphate 3-epimerase activity
KEGG ModuleM00004,M00007
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ReactionR01529
KEGG koko:K01783
KEGG rclassRC00540
Seed eggNOG ortholog44056.XP_009041362.1
Seed ortholog evalue2.2e-103
Seed ortholog score382.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig148.2805.1prot_E-siliculosus-1a_F_contig148.2805.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig148 58125..60719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.7430096-UTR-E-siliculosus-1a_F_contig148:58117..581241622927993.7430096-UTR-E-siliculosus-1a_F_contig148:58117..58124Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig148 58118..58124 +
1696318765.262749-UTR-E-siliculosus-1a_F_contig148:58117..581241696318765.262749-UTR-E-siliculosus-1a_F_contig148:58117..58124Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig148 58118..58124 +
1622927993.8272784-UTR-E-siliculosus-1a_F_contig148:60719..611211622927993.8272784-UTR-E-siliculosus-1a_F_contig148:60719..61121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig148 60720..61121 +
1696318765.317371-UTR-E-siliculosus-1a_F_contig148:60719..611211696318765.317371-UTR-E-siliculosus-1a_F_contig148:60719..61121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig148 60720..61121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.762989-CDS-E-siliculosus-1a_F_contig148:58124..586051622927993.762989-CDS-E-siliculosus-1a_F_contig148:58124..58605Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig148 58125..58605 +
1696318765.2773955-CDS-E-siliculosus-1a_F_contig148:58124..586051696318765.2773955-CDS-E-siliculosus-1a_F_contig148:58124..58605Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig148 58125..58605 +
1622927993.776188-CDS-E-siliculosus-1a_F_contig148:59626..598111622927993.776188-CDS-E-siliculosus-1a_F_contig148:59626..59811Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig148 59627..59811 +
1696318765.2886035-CDS-E-siliculosus-1a_F_contig148:59626..598111696318765.2886035-CDS-E-siliculosus-1a_F_contig148:59626..59811Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig148 59627..59811 +
1622927993.7905939-CDS-E-siliculosus-1a_F_contig148:60554..607191622927993.7905939-CDS-E-siliculosus-1a_F_contig148:60554..60719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig148 60555..60719 +
1696318765.2989645-CDS-E-siliculosus-1a_F_contig148:60554..607191696318765.2989645-CDS-E-siliculosus-1a_F_contig148:60554..60719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig148 60555..60719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig148.2805.1

>prot_E-siliculosus-1a_F_contig148.2805.1 ID=prot_E-siliculosus-1a_F_contig148.2805.1|Name=mRNA_E-siliculosus-1a_F_contig148.2805.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=277bp
MARAGAFVAIACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKD
FWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVC
KGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTL
GLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPS
TLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIF
NNPRTEENYKETIDKMRSELADATIA*
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mRNA from alignment at E-siliculosus-1a_F_contig148:58118..61121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig148.2805.1 ID=mRNA_E-siliculosus-1a_F_contig148.2805.1|Name=mRNA_E-siliculosus-1a_F_contig148.2805.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3004bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig148:58118..61121+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACAACCATGGCTAGGGCAGGAGCGTTCGTTGCAATCGCGTGCGTAGGCG CAAGCCAAGCGTTCGTGGTCCCGACGGCAACCGTCTCGGGCGCATCAACC CGACACACGTCGTCGTCATTGACGATGGCAGCAGAGAACGCGTACCACAA GAAGGACTTCTGGATCGCCCCGTCGATCCTCTCGGCGGACATGGCAAAGC TGGGCCAGGAGGTGGACAACGCGATGTCGGCGGGCGCGGACATCGTTCAC TTCGATGTGATGGACAACCACTACGTGCCTAACCTTACGATCGGGCCCCT CGTGTGCAAGGGGCTGAGGGACCACGGCGTCACCAACCCCATCGACGTGC ACCTCATGGTGTCGCCCGTCGACCGCATCGTCGGCGACTTCGCTGAGGCC GGCGCGTCGTTCATCACGTTCCACCCCGAGGCGTCGCCCCACGTGGACCG TACCCTGGGGCTCATCAAGTCATACGGCTGCAAGGCTGGTGCGTTTCGTG CGTGTGTGACGTTCCTCCTGATTTTTAGAAATTACGTTCACTGAAAGACT AATCGTTCATCAGCAGCTGAGGTCATCTCGGCACACCTGGTCCGATTGCG TGGAGGTGTGTACTGTATGGTTCGGAAGACCTGTATATGCTGTCTTCGAT TGCAAACAAGATGCTGATGTTGGTCGCTCCCGTGACTTGTTTCATGTGTT TGTCATGTGCTCGAGTGTTGCACATGAGTGGAATTGCACCAAAATCACGT TTGAGATGCACAGCATGCGAACCTGCGGGATGTCGCATCATACAACCGCT ACTTTCGTGGTGGGGCTTATGTGCGGGCCCAGCAGCGCAACAAGGAGAGC AATGCTTGCCCCGCCCAACCGCAGGTCGTGTTAACTGCTGTGCCCAGCAT CATCCAATATACTGCTTGTAGCACGCAGAATTCGATAAAAAAGAGGTTTC GTGTGAAAAAGCTGTGAACGGCGAACTTGTATTCTTGGGACCATTCGCCA TGGGGAACAAGCAACGACTGCTGACCAATTACATTCCATGCGATGGTAGA TTCGTTCTCACGTGTCTACCAGTCGTGGCAATTTTTCCAAATTTCCAAAT GCGAGGTCAATGGTCTCATGACTAACGACTACGGCATGCACGACTATGAG TACCCCCCCCACCCCCACCCCCGTCCTTTAAACCCCATGGGCAAATACTC GTACTTCCGAATCCAAGATTCCAAAAATTGAGTGTGCAGCACTCTCTCTG TGTTCGCACAGGTACATAGAGGTGCAAGAGCTAGTAGTTCTCCGCCCCCC ACGATGCCGATGGCGTCTGAAAGTGCACGTCAGTCAAGATGAAAAGATCT TGTCTTGAGCCGGTACCGCAACGCTATCATAGTGGTAAGCTGCCTCAATA AAAACGATCGCCAGCTGAAACCCCAGCTTAAAGGAGTCACGCAGGTTGGA CTGCATTGACCCCCCCCCCCTCCCCGCCCCTCGCTCGTTTCCTTGTACGC TCGCCGTAGGACTTGTGTTCAACCCTGCGACTCCTCTTGACCACGCCAAG TACGTACTGGACAAGGTCGACATCATCCTACTCATGTCTGTCAACCCTGG CTTCGGCGGGCAGAGCTTCATCCCCAGCACCCTCGACAAGCTGAGGGAGG CACGCAAGATGATCGACGAGTCCGGCTACGACATCCGCCTTGAGGTGCGT TTACCGCTGAGCACAAACAAAATGGTGGCAACACTGCGTGGGGTGTGCAG CATGTGGTGGGCTCGCGGTAAGGCAACCGCCGTGGCGTTGTCGCAGCAGC ACTTTTATGTTCATGATTTCCTGTACCCGGCAAAGAGCAGATTGTGGAAG ACGAATCCATGGGCCAACTCTGCATGGTAGGCGTCGGCACAGCAGTTAGT GTACGGCAAATATCGGCCCAGCTTCGGGCGAAGATACCTTGGAGGCTGAT TGGGTGTAGGATTCGTTGCACCCCAGTGGTGCATGCGGTTTAAACGTTTG CGGCGTGTGTTTCGAGATGAATCGACACTTTGCATGGACGGTGCTGCGTG CAGTTGGCGTGCCGGTTTCGTGTTGGCCCACCGCCTTGGGGGCGAAGGAC GGGGGGGTTAGGTTGTCGTTTTTCTGTTTGAAGTTGATACCTTGACCTCC TCCCGTTATAGAGTGGGAGCATCGTTCACATCTTTGTGGCCACGAACACG CGAGGAGGGGGAGGAGGTACCGATTGTTTTGTTTTCGCCTACCGAACAGG CATGACGTGAATCGCGAAGCACCATGAGGTGTTCGTGAGCTCTGTGACAG CATCGTGCTGCTGTCGGGCATGGGTTTTACTCGCAATGCTTCGACAGCAG ACCGTGGCTGTGGCCGGGGTTGTCATTTGACTTTTGGATTTGCCTGACAC GTGCTTCGTCGCGCCTCGTGTGCACATATCGTTACAGGTGGACGGTGGTT GCGGTGTAGCCAACATCAAGGAGATCGCGGAGGCGGGCGCGGACATGTTC GTCGCGGGGTCGGCTATCTTCAACAACCCCAGGACGGAGGAAAACTACAA GGAGACTATCGACAAGATGCGCTCCGAGCTCGCCGACGCGACCATCGCGT AGAGGGCAACATTTGACCGTGACTGAACGACGGCGTGAGTGCAATACATG TACAACGTGGGTCGATGACAAAGAATGCTTTTAAGTCAGTTGGTCAGAGG AAGCGGAGCAGGTAGTAGAAGTAAAGTCGAGAGATCCTACTAGGCATTGG AAACGTTTCTTGGGGTATGCATGGGCATACGCCAGCCGCAAGCTTTTCAA CAACGGTGAAACTTTTAACTTCCAGATACTACAATCGTCCTAACATTTGC ATACCTTGCCATTGCTTTCATGATATCCGTTCAAAGACAAGGGCTTCGCT GACCTACTGCCCCTGTTCGGTCTTGCTTTCACGCTCCACCAGTCTGCTCC CAAAAAAATTCGGGAGGAAGATGGCGGCGCGACATGCACAGCAGAAAAAC ATCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig148:58118..61121+

>mRNA_E-siliculosus-1a_F_contig148.2805.1 ID=mRNA_E-siliculosus-1a_F_contig148.2805.1|Name=mRNA_E-siliculosus-1a_F_contig148.2805.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig148:58118..61121+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTAGGGCAGGAGCGTTCGTTGCAATCGCGTGCGTAGGCGCAAGCCA
AGCGTTCGTGGTCCCGACGGCAACCGTCTCGGGCGCATCAACCCGACACA
CGTCGTCGTCATTGACGATGGCAGCAGAGAACGCGTACCACAAGAAGGAC
TTCTGGATCGCCCCGTCGATCCTCTCGGCGGACATGGCAAAGCTGGGCCA
GGAGGTGGACAACGCGATGTCGGCGGGCGCGGACATCGTTCACTTCGATG
TGATGGACAACCACTACGTGCCTAACCTTACGATCGGGCCCCTCGTGTGC
AAGGGGCTGAGGGACCACGGCGTCACCAACCCCATCGACGTGCACCTCAT
GGTGTCGCCCGTCGACCGCATCGTCGGCGACTTCGCTGAGGCCGGCGCGT
CGTTCATCACGTTCCACCCCGAGGCGTCGCCCCACGTGGACCGTACCCTG
GGGCTCATCAAGTCATACGGCTGCAAGGCTGATGGCTAGGGCAGGAGCGT
TCGTTGCAATCGCGTGCGTAGGCGCAAGCCAAGCGTTCGTGGTCCCGACG
GCAACCGTCTCGGGCGCATCAACCCGACACACGTCGTCGTCATTGACGAT
GGCAGCAGAGAACGCGTACCACAAGAAGGACTTCTGGATCGCCCCGTCGA
TCCTCTCGGCGGACATGGCAAAGCTGGGCCAGGAGGTGGACAACGCGATG
TCGGCGGGCGCGGACATCGTTCACTTCGATGTGATGGACAACCACTACGT
GCCTAACCTTACGATCGGGCCCCTCGTGTGCAAGGGGCTGAGGGACCACG
GCGTCACCAACCCCATCGACGTGCACCTCATGGTGTCGCCCGTCGACCGC
ATCGTCGGCGACTTCGCTGAGGCCGGCGCGTCGTTCATCACGTTCCACCC
CGAGGCGTCGCCCCACGTGGACCGTACCCTGGGGCTCATCAAGTCATACG
GCTGCAAGGCTGGACTTGTGTTCAACCCTGCGACTCCTCTTGACCACGCC
AAGTACGTACTGGACAAGGTCGACATCATCCTACTCATGTCTGTCAACCC
TGGCTTCGGCGGGCAGAGCTTCATCCCCAGCACCCTCGACAAGCTGAGGG
AGGCACGCAAGATGATCGACGAGTCCGGCTACGACATCCGCCTTGAGGAC
TTGTGTTCAACCCTGCGACTCCTCTTGACCACGCCAAGTACGTACTGGAC
AAGGTCGACATCATCCTACTCATGTCTGTCAACCCTGGCTTCGGCGGGCA
GAGCTTCATCCCCAGCACCCTCGACAAGCTGAGGGAGGCACGCAAGATGA
TCGACGAGTCCGGCTACGACATCCGCCTTGAGGTGGACGGTGGTTGCGGT
GTAGCCAACATCAAGGAGATCGCGGAGGCGGGCGCGGACATGTTCGTCGC
GGGGTCGGCTATCTTCAACAACCCCAGGACGGAGGAAAACTACAAGGAGA
CTATCGACAAGATGCGCTCCGAGCTCGCCGACGCGACCATCGCGTAGGTG
GACGGTGGTTGCGGTGTAGCCAACATCAAGGAGATCGCGGAGGCGGGCGC
GGACATGTTCGTCGCGGGGTCGGCTATCTTCAACAACCCCAGGACGGAGG
AAAACTACAAGGAGACTATCGACAAGATGCGCTCCGAGCTCGCCGACGCG
ACCATCGCGTAG
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