mRNA_E-siliculosus-1a_F_contig148.2805.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI) HSP 1 Score: 543 bits (1398), Expect = 1.270e-192 Identity = 275/276 (99.64%), Postives = 275/276 (99.64%), Query Frame = 2
Query: 8 MARAGAFVAIACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 835
MARAGAFVA ACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA
Sbjct: 1 MARAGAFVAFACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 276
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA) HSP 1 Score: 401 bits (1031), Expect = 7.730e-137 Identity = 212/275 (77.09%), Postives = 234/275 (85.09%), Query Frame = 2
Query: 8 MARAGAFVAIACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
M ++ A +A VG + AF + A +R TSS L MA NA+H+KDF IAPSILSADMAKLG+EVDNAM+AGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV N IDVHLMVSPVDRIVGDFAEAGAS+ITFHPEASPHVDRTL LIKS GCK+GLVFNPATPLD AKYVLDKVDIILLMSVNPGFGGQ+FIP+TLDKLREAR MIDESG+DIRLE+DGG NIKEIAEAGADMFVAGSA+F NPRT E Y +TI K+R+ELA A I
Sbjct: 1 MVKSTAVAVLATVGVACAFAP-----ASAPSRPTSS-LRMA-NNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSGLVFNPATPLDFAKYVLDKVDIILLMSVNPGFGGQAFIPATLDKLREARAMIDESGFDIRLEIDGGVTQNNIKEIAEAGADMFVAGSAVFKNPRTVEAYTDTITKLRAELAAAQI 268
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA) HSP 1 Score: 388 bits (997), Expect = 8.130e-132 Identity = 199/262 (75.95%), Postives = 218/262 (83.21%), Query Frame = 2
Query: 35 IACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELA 820
+AC G + V V +T + MAA KKDFWIAPSILSAD AKLGQEVDN ++AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTL LIKS GCK+GLVFNPATPL A++VLDKVDIILLMSVNPGFGGQSFIP TL KL+EARKMIDESGYDIRLEVDGG GVANIK+IAEAGAD FVAGSAI NPRT++ YK TID MR+ELA
Sbjct: 7 LACAGVAALATVAHGFVPPVPRSYTRGRMAMAA-----KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELA 263
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN) HSP 1 Score: 380 bits (976), Expect = 1.770e-128 Identity = 186/227 (81.94%), Postives = 203/227 (89.43%), Query Frame = 2
Query: 152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
KDF IAPSILSAD A+LG+EV N++SAGAD+VHFDVMDNHYVPNLTIGP+VC LR HGVT PIDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTL LI+ GCKAGLVFNPATPLD KYV+DKVDIILLMSVNPGFGGQSFIP+TLDK REARK+ID SGYDIRLE+DGG ANIKE+AEAG DMFVAGSAIF +PRTEE+YK TID MR ELA A +
Sbjct: 43 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAKV 269
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A6S8QFJ5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8QFJ5_9STRA) HSP 1 Score: 379 bits (974), Expect = 3.440e-128 Identity = 186/228 (81.58%), Postives = 204/228 (89.47%), Query Frame = 2
Query: 149 KKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
+KDF IAPSILSAD AKLG EVD +++AGAD+VHFDVMDNHYVPNLTIGP+VC LR HGVT PIDVHLMVSPVDRIV DFA+AGAS+ITFHPEASPHVDRTL LI+S GCK+GLVFNPATPLD KYV+DKVDIILLMSVNPGFGGQ+FIP+TLDK REARKMIDESGYDIRLE+DGG ANIKE+AEAG DMFVAGSAIF +PRTEE YK+TID MR ELA A +
Sbjct: 41 EKDFLIAPSILSADFAKLGAEVDASLAAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVQDFADAGASYITFHPEASPHVDRTLQLIRSTGCKSGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQAFIPATLDKAREARKMIDESGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEAYKKTIDAMRDELAAAKV 268
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: L1JR28_GUITC (Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR28_GUITC) HSP 1 Score: 364 bits (934), Expect = 4.290e-122 Identity = 172/228 (75.44%), Postives = 197/228 (86.40%), Query Frame = 2
Query: 152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 835
KD+ IAPSILSAD AKLGQEVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK LR+HGVT PIDVHLMV PVDRI+GDF +AGAS+ITFHPEAS H+DRTL +I+ GCKAGLV NPAT LD+ KYV+DK+DIILLMSVNPGFGGQ FIPS L+K +EARK+ID SGYDIRLE+DGG V NIK++AE G DMFVAGSAI PRT++ YK TIDKMR +LA A +A
Sbjct: 49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAKVA 276
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA) HSP 1 Score: 363 bits (933), Expect = 6.300e-122 Identity = 181/244 (74.18%), Postives = 208/244 (85.25%), Query Frame = 2
Query: 89 GASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELA 820
G TR + SSL M A+ + KD+ IAPSILSA+ AKLG+EVDN ++AGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFA+AGA +ITFHPEAS H+DR+LGLIKS GCK+GLVFNPAT LD+AKYVLDKVDIILLMSVNPGFGGQSFIP DK+++ARKMIDESGYDI+LE+DGG V NIK+IAEAG DMFVAGSAI PR ++ Y ETI MR +LA
Sbjct: 28 GLGTRVSKSSLKMGAD--FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSGLVFNPATSLDYAKYVLDKVDIILLMSVNPGFGGQSFIP-IYDKIKQARKMIDESGYDIKLEIDGGVNVNNIKDIAEAGVDMFVAGSAILKEPRNKDAYAETIKTMREQLA 268
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S0LBR0_9EUKA (Ribulose-phosphate 3-epimerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBR0_9EUKA) HSP 1 Score: 358 bits (919), Expect = 4.610e-120 Identity = 173/226 (76.55%), Postives = 199/226 (88.05%), Query Frame = 2
Query: 155 DFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
++ IAPSILSAD AKLG+EVD ++AGAD VHFDVMDNHYVPNLTIGPLVCK LR+HG+T PIDVHLMVSPVDRI+GDFA+AGAS+ITFHPEA+ H+DR+L L+++ GCK+GLVFNPAT LD KYV+DKVDI+LLMSVNPGFGGQSFIP+TLDKLREAR MIDESG+DI LE+DGG G ANI E+A AGADMFVAGSAIFN P +YKETIDKMR+ELA +
Sbjct: 32 EYLIAPSILSADFAKLGEEVDTVLAAGADTVHFDVMDNHYVPNLTIGPLVCKALRNHGITAPIDVHLMVSPVDRIIGDFADAGASYITFHPEATTHIDRSLQLVRAAGCKSGLVFNPATSLDCLKYVMDKVDIVLLMSVNPGFGGQSFIPATLDKLREARAMIDESGFDISLEIDGGVGPANIAEVAAAGADMFVAGSAIFNTP----DYKETIDKMRAELATVPV 253
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S0M6B2_9CRYP (Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6B2_9CRYP) HSP 1 Score: 356 bits (914), Expect = 2.290e-119 Identity = 171/228 (75.00%), Postives = 199/228 (87.28%), Query Frame = 2
Query: 152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 835
KDF IAPSILSA+ AKLG+EVDN ++AGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMVSPVDRI+GDF +AGAS+ITFHPEA+ HVDR+L L+++ GCK+GLVFNP+T LD+ KYV+DKVDIILLMSVNPGFGGQ FIP+ LDK REARKMIDESG+DIRLE+DGG V NIK++AEAG D FVAGSAI PRT++ Y+ TI++MR+ LA A A
Sbjct: 25 KDFLIAPSILSANFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVSPVDRIIGDFVDAGASYITFHPEATNHVDRSLSLVRAAGCKSGLVFNPSTSLDYLKYVMDKVDIILLMSVNPGFGGQKFIPNVLDKAREARKMIDESGFDIRLEIDGGVTVDNIKDVAEAGVDFFVAGSAILKAPRTKDAYRSTINQMRTNLAAAKRA 252
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Match: A0A7S2E7A3_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7A3_9STRA) HSP 1 Score: 356 bits (913), Expect = 4.010e-119 Identity = 174/227 (76.65%), Postives = 195/227 (85.90%), Query Frame = 2
Query: 152 KDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATI 832
KD+ IAPSILSAD AKLG+EVDN + AGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD +GDF +AGAS+ITFHPEA+ HVDR+L LIK+ GCKAGLVFNPAT LD A+YV+DK+DIILLMSVNPGFGGQ+FIP+TLDK R ARKMIDE+G D RLE+DGG V NIKE+ EAG DMFVAGSAI PRT E YK TID+MR ELA A +
Sbjct: 37 KDYLIAPSILSADFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHVDRSLQLIKAGGCKAGLVFNPATSLDIAEYVMDKLDIILLMSVNPGFGGQAFIPATLDKARLARKMIDEAGVDCRLEIDGGVKVDNIKEVCEAGVDMFVAGSAILKEPRTVEAYKATIDEMRKELAAAEM 263 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig148.2805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig148.2805.1 >prot_E-siliculosus-1a_F_contig148.2805.1 ID=prot_E-siliculosus-1a_F_contig148.2805.1|Name=mRNA_E-siliculosus-1a_F_contig148.2805.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=277bp MARAGAFVAIACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDback to top mRNA from alignment at E-siliculosus-1a_F_contig148:58118..61121+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig148.2805.1 ID=mRNA_E-siliculosus-1a_F_contig148.2805.1|Name=mRNA_E-siliculosus-1a_F_contig148.2805.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3004bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig148:58118..61121+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig148:58118..61121+ >mRNA_E-siliculosus-1a_F_contig148.2805.1 ID=mRNA_E-siliculosus-1a_F_contig148.2805.1|Name=mRNA_E-siliculosus-1a_F_contig148.2805.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig148:58118..61121+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |