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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig148.2798.1 vs. uniprot
Match: D8LBI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI5_ECTSI) HSP 1 Score: 485 bits (1249), Expect = 3.560e-166 Identity = 279/289 (96.54%), Postives = 282/289 (97.58%), Query Frame = 2
Query: 278 MSVTPTRSGGVTSWSILMDFRYPFPWETTAAFVLRVKTKGPPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPTAKTLSEDGINISLQRLGTVRDCSSWRACEDDPNVTMYSKRVDFDIRMPVGPTIMMQQVAQPLMRWFRTKSQLCRELEVQAIREFVAAEKGKTEEERTERLANDAAWMAALTAEATPPLSPXXXXXXXXXXXXEADRKEQVHAEEEQAQPTTRLAGARARVKNVVSKARAKLAKVVGAGAAERSRSQAXXXXXXXXXXXXAADGSS 1144
MSVTPTRSGGVTSWSILMDFRYPFPWETTAAFVLRVK KGPPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPT KTLSEDGIN+SLQRLGTVRDCSSWRACEDDPNVTMYSKRVDFDIRMPVGPTIMMQ VAQPLMRWFRTKS LCRELEVQAIREF+ AEKGKTEEERTERLANDAAWMAALTAEATPP+SPXXXXXXXXXXX EADRKEQVHAEEEQAQPT RLAGARARVKNVVSKARAKLAKVVGAGAAERSRSQAXXXXXXXXXXXXAADGSS
Sbjct: 1 MSVTPTRSGGVTSWSILMDFRYPFPWETTAAFVLRVKAKGPPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPTTKTLSEDGINMSLQRLGTVRDCSSWRACEDDPNVTMYSKRVDFDIRMPVGPTIMMQ-VAQPLMRWFRTKSHLCRELEVQAIREFIEAEKGKTEEERTERLANDAAWMAALTAEATPPVSPXXXXXXXXXXXSEADRKEQVHAEEEQAQPT-RLAGARARVKNVVSKARAKLAKVVGAGAAERSRSQAXXXXXXXXXXXXAADGSS 287
BLAST of mRNA_E-siliculosus-1a_F_contig148.2798.1 vs. uniprot
Match: A0A835YI97_9STRA (PRELI/MSF1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI97_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.790e-33 Identity = 69/158 (43.67%), Postives = 100/158 (63.29%), Query Frame = 2
Query: 308 VTSWSILMDFR---YPFPWETTAAFVLRVKTKGPPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPTAKTLSEDGINISLQRLGTVRDCSSWRACEDDPNVTMYSKRVDFDIRMPVGPTIMMQQVAQPLMRWFRTKSQLCRELEVQAI 772
VTS+ L+ F YPFPWE A FVL KTKGPPD+ + L + F Y++ MPWYARL+LG ++W DV+ + + ++E G N +L G V D S W A +++P T+YSK VDF+++ ++++ V+ PL++WFR KS L RE+E AI
Sbjct: 54 VTSFVALISFHTSVYPFPWERVADFVLSEKTKGPPDDQIKLITEGLTFHYSIPMPWYARLLLGPVVLWDDVITVDYVKREMTERGRNTNLLSHGLVTDTSHWVASKENPQETLYSKTVDFNVKATWSAELILR-VSGPLIKWFRAKSMLMREIETAAI 210
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 903 |
| Model size | 1943 |
| Exons | 7 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog | Ec-27_003860.3 |
| Ec32 ortholog description | expressed unknown protein |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig148.2798.1 >prot_E-siliculosus-1a_F_contig148.2798.1 ID=prot_E-siliculosus-1a_F_contig148.2798.1|Name=mRNA_E-siliculosus-1a_F_contig148.2798.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=301bp
MSVSPQLLALMSVTPTRSGGVTSWSILMDFRYPFPWETTAAFVLRVKTKG
PPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPTAKTLSE
DGINISLQRLGTVRDCSSWRACEDDPNVTMYSKRVDFDIRMPVGPTIMMQ
QVAQPLMRWFRTKSQLCRELEVQAIREFVAAEKGKTEEERTERLANDAAW
MAALTAEATPPLSPPPPAAPSSCCSSEADRKEQVHAEEEQAQPTTRLAGA
RARVKNVVSKARAKLAKVVGAGAAERSRSQAATRSAAAAAAGAAADGSSP
* back to topmRNA from alignment at E-siliculosus-1a_F_contig148:599..6642- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig148.2798.1 ID=mRNA_E-siliculosus-1a_F_contig148.2798.1|Name=mRNA_E-siliculosus-1a_F_contig148.2798.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig148:599..6642- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGTGTGCTGTGCGACCAGCTCACCACAGCCTGCAGAAAGCCTCTCCGT
TTCTCCCTTGGTACGGAGGCGTTGCGGCTTGCGTCGTTGACCTCAGCAGG
TAAGTGTATGTATGCATTGCGTCGGATGGAAGCACGGTCTCATAGAAGGT
TGGGTGGTCTAGAAGATGTAAGAGCGGCGAGATTTATTGCTGTACAACCA
GCAGCAGTCCACTCCTACCTTTTTTAGCTTTACCGACCAGTTCAGGAACA
CACTCCTTGGATTCGCGTCGGAAGTATGCGCGCAGCAGTGGTTGCGATAC
GAACATATAAATTGTGGGATACCTTTGCGCGTTATTCTTGGATTCGCGTC
AGAAGTATGTGTGTGGTTGCGATTTGATACGAACATAGACTACTCTGTAC
GGCGCGTGGGATGGACAACCTTGCCCGTAAATATTTTACACCTTACATAG
GTTAGCTGCGTCGCTCACATAGACTATATATATCGGGTCCGGAGCTTGCA
ATGTACTTGTATATAGCACCATCAGGGTGAACATGGACCTTTTGTTGGGG
AAGAACTTCTGTACACATATGTACCATGTGAGGTAGACCTACCTATCGTC
CTATCATACGCTATAGACGTTACCGGGAACACATGAATATAACATTCATT
GGGTACATGATTCTGGAATACACCAACACACACCCGACCTACAGCAGGGT
TTCGACGCGGAAGCGTGGACGACAGCCAATACGCCCAACCCCCGTCGAGA
TATGCTTAGAGTCTCCGCGCAACGTTGCTTCACACACGCAGCAGGGGGAA
GGTACCAAAACCGCCTCTCCCTGTGGTTGATGTTTAGCTAGTAGTGGACA
GCATCATCATTTGTGTCCATGCGTAAACCCATCAACGTAAAACCACCAAC
ATAGGAGGCAAACGTGCAAGGGGCGCGATCGTTCTTTTTTTAACTCACAG
CATTCCTCTCTGTTGTTGTCACGGTGCCACCCAGCCTGCAGCAGCCTCGA
GACTCCTTCTCTCCCTTGGGCGCGGCTTGGATCTGACTGGGAAGGAAACA
GGCTCTCTCTCTGTGTCCTCGTTCGCTTATCGGTCTTCTTCTTGGCTCGC
GTGTCATCCACGCGGTGCATGGGGGGCTCATCATGTCTGTGTCGCCGCAA
CTGCTCGCTCTCATGTCCGTCACCCCGACTCGGAGTGGCGGAGTCACCTC
CTGGTCCATCCTCATGGACTTTAGGTGAGAGAGGCAACACTTGGCCTCTC
AGGGGTAGGCAGCAGCAAGTGCAGCAACAGCAGTAGTTTGCGCCTGCTGT
GGTGCTGCAGGGTCAACCTGGCTGTAGGTTGTTTGCAATACGAACTCTTT
AGGCGCGTGTGGAAAAACGTAGGCTTTCGCGGTCCCCCGCCTCCGCTGCT
CACACACATGCCTGATCGGTTACCGGCTGCATCTGGTTAGTGCGTGCGTC
GAGCGAAAGGGGCCGTTCTTGCTACGGTTATGATGGCATGAGTAGGGAAC
CTGTGATGGTTATGACTGTGCCTTCTCTCCACAATACGTACGAGGGGCCA
TGTCATCTTGTAGAGCGCGCTCGTCCGTGGGGGCGGCATATATAGTAAGC
AGTGTTGAGGGCAAATAGAGAACGATCTGTGATGTTCTATTTGTTTCCCG
TCAACTTCACGTATTAGGACCAACCCCACCACTGGAAATCCCCCACTCCA
ACCTTTGTTCACACGGTGGGCCACGCGGTCTGTATCAACTTTTGTCGTAA
AGCATGCATGCAAAAGCGTGCGAGTAGTTTTCACTGGCACACCTCTCCTG
TCTGTCCGTCTTGTCTGTTTGTCTGCAATTCTTTCTCTCTCTGTTTCCCT
CTCTCTCCCTTTCTCTGTCGTCTCTCTCTTTCTCTCCTCTCCCCCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCCCTGTGTCATGCGCGCG
TGGTGTGCTACGTCGATCGCACTCGGCGGCGCTGTCGGCCGCTTCGTGCT
TGCTTGGCACAACAGATATCCCTTCCCGTGGGAAACTACGGCGGCGTTCG
TTTTGAGGGTGAAGACTAAGGGACCCCCAGACGAGATGGTCACTCTGGAG
GTGGACCGCAACGTGTGAGACACATGTGGCAGAATTTGGAGTAGCAGACA
AACAGCGATAGCGGCAGCGGGGGTTCCAAGTGTCGTGCCTAGAACCACCG
CCGTGCCCATACCTATGTTCCCATCTCCGCCGACCCCTGTTTGCGTACTT
ACGTCTTGCGTTCTACGCGGTACTCCGTTGCTGTATTTGTGTTGCCGTCG
ATATGGATAGCATATCTTCTCCGACGGTCCTAGTTGATTCGTCGATCTTT
CTCCCACCTACCTGACTTTTGTGCCTCACTTTCGTCTCCCTTAGTTATCC
GAAACGTAACACGCTTGCCGCTGGTGCACCAAACGTGGCATCTACGTTTC
TCCAGTGGGTTGCTTCACGCCACCCCACTCTATCCCACCCTGCCCCCCTA
CCGCCAGCTTCAAGTACAACGTGCACATGCCTTGGTACGCCCGGCTAGTC
CTCGGAAAGAACATCATATGGCACGACGTTCTTCACGCGAACCCAACCGC
CAAGGTACGTTCATGCTACTGCTGTTGCACTCCTACTCCTGCTGCAACTA
TGATACAGGACACGTTACTACCCCCTAGGTTACAACAGTGCTGTCGACGT
GATCGAGTGCGGCGTTTGTTTTGTCCTACATCTTCCGAGTAGAAAACGTT
GCAGCATCTACGTGTGTGATGTTTTCCCAGCAGTCCGCATCTGTTGGTGG
GAGGGGAGGCGGCAGTGCCGACGATTTCGCTCATCACCTCCCTCCAGCCT
CATCCTATCGCGGCATCGTCTCCCGCTTTAGTATTTCTGATTGCGCGCTT
TAGCCAACCCTGCTGGCGGACGTTCTCTGCTGCTGAGCCCACCTCGATAC
ACATTGCTATGTACAACGTGTGGCAACGGATCAGGAATCGTGCTGACAGA
AGTGACTCCACTGTATGACTGCATTGCCTACTCGTCACCGTGAACCAATT
TCCGCCTCGGTGTGTTTTTTTGGCATCGTTTGAATTCTGCTTCCCTCAAA
ACTGAATGCTGCAATTGGCGCATTGATTGTTTTTCCTTACTGCGCTTACG
CCCGCTTGGCCAGACGCTGTCAGAAGATGGCATCAACATAAGCCTGCAAC
GGCTGGGCACGGTGCGGGACTGCTCATCGTGGCGGGCATGCGAGGATGAT
CCAAACGTGACCATGTACAGTAAGCGAGTGGACTTTGACATCCGCATGCC
GGTGGGGCCAACGATCATGATGCAGGTATGGTATCGATCACGTAACGTGG
GCCTCTACGATACGTACAAAAGTTGAGTTTCTCGGCTGTGAGGGGTACAA
GTATGAGCGACTCACTCCCATGCGTATCTTTGATAGGCGTGATTCAGAAA
ATGGCGTACATAAATTACTCAGACCTTTGACACAGTTGTTATTCCGCACT
GCTGGTGTGTGCTCCCGGCAGCAGTCTGTCCATGTATGGTGCGCACATAT
CAGATGCCCATACACTCCTGTGTGCTGAGTCCTTTGTTGTCGTTGAATCG
TTGATGGGGATTGATTGCCACATAACCCACCAATACTCAAGAACATGCTT
TTTGTTCAACCCTCGCTCCATACTTGATCAGAGTGGAGAAACTAGCCGGG
AATGTAGAACATAGGCGAGTGTGGGTGCTGTAGGGATCGAGTGCTTCCAT
TTGGTGAGATCGAACCCTCAATCAAAATCAATTTCGGAGTGGTGGCGCGT
TCTGTGGTCCACAATGTTTTTCGTCCTGCGCCTAGTGTTTTCTCGGCGAT
CGGACGTACAAGTATTCGGTGTGGTGTGTGGTGTGTGGTGTAAGAAGGTA
CACAACGGAGACGACCGGTCGTTTTAAGACGGTTTGATCCACGTGGCGGT
TTTTGTTTGGACACAGCCACGGCGCGGTGGGCATGTGACAAGGCAGGGAG
GCTGGTTCATCTACTCGATCACCTAGTTTCTTTGGCGCTAGCCGCCGTCG
GGGGGGGGGCGGGGGGGGGCGAAGCGCGCCGAAAATCGGCAACTCTACAT
ACGTACAACACACCATCCAACCCCGCTAAAGTCATCGCCCAACAACCACA
AGTACAATTATTGTATTGTCAACAGTAGCAGCCGGAGCGGTCAACTATGA
AACGACCACTGTGTGTAACTTGTGACTTAATACAATATATTAACGACGAC
AAAGATTAAGACAGCAACGATTGTGACGACGTCAAAAGCAGGTGGCGCAG
CCCCTCATGCGATGGTTCAGGACCAAGAGCCAGTTGTGTAGAGAGCTGGA
AGTGCAGGCGATTCGCGAGTTTGTCGCGGCGGAGAAAGGGAAGACGGAGG
AGGAGCGGACAGAGCGCCTAGCGAACGACGCGGCATGGATGGCAGCCTTG
ACAGCGGAGGCAACCCCGCCCTTGTCTCCCCCCCCTCCTGCTGCGCCATC
CTCCTGTTGTTCTTCAGAGGCAGATCGGAAGGAACAGGTACACGCCGAGG
AAGAGCAAGCGCAGGTAAGTGCTTGCCTGACGGTTACGCTTGCCCATGCG
ACGAGTTTAGAGTTCGCTCTGGTTGGAATTTGATTTGATTCGCTCTGTTG
TGATTTGAGTGTAGACGTACGTACGCGTCCCTCCATTTGTTCCCTTTCAG
CAATGTCGTGTGGTTTGGCATGACGGATACAGATTGAGCTTCCTTGTATT
CGCCTGCAGCGATCGTGCATATGAATACGTGATGCACCTGTCGGTTTTGC
GCGCCCCCAAGTGATGATGCACTCCCATGTGCTTCGTTTCATGTCTCCCG
CCCTCGTATTATATATACTGTGTCTCGTACGTCGTTGGTACTTATGCTCA
GGCGAGCAATCTGATTTCCCTGCTCTTTTTTCCATTTTTTTTTTTGTCGT
GGATCGTCGTATTGGTTCATTGGGTACAATTTCCGCACGCCAACTCTTCT
CTCGCTGCCTCGTCTTTCCGGGTAAACTCGGGCCTTGCTGTGTTTGCATC
CGTCGTGTCGTCATGCAACGAAAGCCGACGACAAGGCTAGCGGGAGCCAG
GGCGAGGGTGAAGAACGTGGTCTCCAAGGCCAGGGCAAAGCTCGCCAAGG
TGGTGGGAGCGGGTGCGGCCGAGAGATCACGGTCGCAGGCGGCGACGAGG
TCGGCGGCGGCGGCGGCGGCCGGCGCGGCAGCGGACGGCTCGTCACCATG
ATTCTGCTCGCTGTTGGTTCGATTCCAGCAGGATAGGCTCTCTCCCGAGG
CGACGGCCGCAGCCACCCTAGAAGCGAAAGATGGTTGCGGTGGTGGGAGT
AATCACGCTACCGTGGCTTACGAGGCTATAGGTGGGGGAGTGCAAGAGGC
AGTTGGTAGGTCTGGGTGGCGGCATGTATTGTAGGGCGGGTAGCGTAAGG
AGAGGCCGGATTGCCGATCCTGGGGGTGGCCACCGTGAGCGGGGAAGCTG
TTTGTGTAATGTAAAATTATTTTTCGTGCAGGCGTTTCTTCGTTTGCTTT
GGTATCCACGGTATCTGTTGGTTTAGGTTGTGACTGTTTTCGGTTGGATT
GTTTTCTGTCTGTGGGGGGAGAGGTGGCCGGTTAGGGAGCTAACCCCCGT
TGTTGTGGGCTTTTGGATGTGTCCTGTTACAAATCCCCGGGTTTTTTTTT
GTTATTTTTTGGCCGCGCATGGTCCCTGCCTCCGTGTGGAGAATTTTTAT
TTGTTGCCAGAGTTGGTGGTTGTGACGGTGGGGAAGGGCGCTACATTTCC
CCCGCGCGGGGGGAGTCTCCTTGTGGGGGTCTGTATTTGATGATGAGAGT
GACACTCTGCGGCACTGGCTCGCGGCTCCGTACGATAAACTGTCCAGTGT
CAGATGTTCTCCCGTCTCTTTGTACAAGGGGTGTGGAGACCAAACTAGCG
TGTACCCACCTCCGTGCCAGTCTGAGCGTGTGTAGGCTACACGGGGAGAT
CAGTAGTGGCAAAAAGCTGTAGGAAGACGCACCATGACCCTACC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig148:599..6642- >mRNA_E-siliculosus-1a_F_contig148.2798.1 ID=mRNA_E-siliculosus-1a_F_contig148.2798.1|Name=mRNA_E-siliculosus-1a_F_contig148.2798.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1806bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig148:599..6642- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGTGTCGCCGCAACTGCTCGCTCTCATGTCCGTCACCCCGACTCG
GAGTGGCGGAGTCACCTCCTGGTCCATCCTCATGGACTTTAGATGTCTGT
GTCGCCGCAACTGCTCGCTCTCATGTCCGTCACCCCGACTCGGAGTGGCG
GAGTCACCTCCTGGTCCATCCTCATGGACTTTAGATATCCCTTCCCGTGG
GAAACTACGGCGGCGTTCGTTTTGAGGGTGAAGACTAAGGGACCCCCAGA
CGAGATGGTCACTCTGGAGGTGGACCGCAACGTATATCCCTTCCCGTGGG
AAACTACGGCGGCGTTCGTTTTGAGGGTGAAGACTAAGGGACCCCCAGAC
GAGATGGTCACTCTGGAGGTGGACCGCAACGTCTTCAAGTACAACGTGCA
CATGCCTTGGTACGCCCGGCTAGTCCTCGGAAAGAACATCATATGGCACG
ACGTTCTTCACGCGAACCCAACCGCCAAGCTTCAAGTACAACGTGCACAT
GCCTTGGTACGCCCGGCTAGTCCTCGGAAAGAACATCATATGGCACGACG
TTCTTCACGCGAACCCAACCGCCAAGACGCTGTCAGAAGATGGCATCAAC
ATAAGCCTGCAACGGCTGGGCACGGTGCGGGACTGCTCATCGTGGCGGGC
ATGCGAGGATGATCCAAACGTGACCATGTACAGTAAGCGAGTGGACTTTG
ACATCCGCATGCCGGTGGGGCCAACGATCATGATGCAGACGCTGTCAGAA
GATGGCATCAACATAAGCCTGCAACGGCTGGGCACGGTGCGGGACTGCTC
ATCGTGGCGGGCATGCGAGGATGATCCAAACGTGACCATGTACAGTAAGC
GAGTGGACTTTGACATCCGCATGCCGGTGGGGCCAACGATCATGATGCAG
CAGGTGGCGCAGCCCCTCATGCGATGGTTCAGGACCAAGAGCCAGTTGTG
TAGAGAGCTGGAAGTGCAGGCGATTCGCGAGTTTGTCGCGGCGGAGAAAG
GGAAGACGGAGGAGGAGCGGACAGAGCGCCTAGCGAACGACGCGGCATGG
ATGGCAGCCTTGACAGCGGAGGCAACCCCGCCCTTGTCTCCCCCCCCTCC
TGCTGCGCCATCCTCCTGTTGTTCTTCAGAGGCAGATCGGAAGGAACAGG
TACACGCCGAGGAAGAGCAAGCGCAGCAGGTGGCGCAGCCCCTCATGCGA
TGGTTCAGGACCAAGAGCCAGTTGTGTAGAGAGCTGGAAGTGCAGGCGAT
TCGCGAGTTTGTCGCGGCGGAGAAAGGGAAGACGGAGGAGGAGCGGACAG
AGCGCCTAGCGAACGACGCGGCATGGATGGCAGCCTTGACAGCGGAGGCA
ACCCCGCCCTTGTCTCCCCCCCCTCCTGCTGCGCCATCCTCCTGTTGTTC
TTCAGAGGCAGATCGGAAGGAACAGGTACACGCCGAGGAAGAGCAAGCGC
AGCCGACGACAAGGCTAGCGGGAGCCAGGGCGAGGGTGAAGAACGTGGTC
TCCAAGGCCAGGGCAAAGCTCGCCAAGGTGGTGGGAGCGGGTGCGGCCGA
GAGATCACGGTCGCAGGCGGCGACGAGGTCGGCGGCGGCGGCGGCGGCCG
GCGCGGCAGCGGACGGCTCGTCACCATGACCGACGACAAGGCTAGCGGGA
GCCAGGGCGAGGGTGAAGAACGTGGTCTCCAAGGCCAGGGCAAAGCTCGC
CAAGGTGGTGGGAGCGGGTGCGGCCGAGAGATCACGGTCGCAGGCGGCGA
CGAGGTCGGCGGCGGCGGCGGCGGCCGGCGCGGCAGCGGACGGCTCGTCA
CCATGA back to top
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