mRNA_E-siliculosus-1a_F_contig1479.2792.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: D8LBW9_ECTSI (Novel cap binding protein nCBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW9_ECTSI) HSP 1 Score: 773 bits (1996), Expect = 5.250e-277 Identity = 486/516 (94.19%), Postives = 491/516 (95.16%), Query Frame = 1
Query: 142 LLANNHLGP------DEGHLHSSLEPPAGXXXXXXXXXXXXXXXXXTDDLADSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFGPRGGPPGGAWTRHGRGGGPRGMGDRGDDHHHKDGDRAAPAAGGGMPQETWARGPPEARDRDRDAGGFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGKDYGXXXXXGDRERGDXXXKGFGRGDRVDREKDLEKWGKVRKDPTSHRDXXXXXXXGDPAFRDRAEFRDRDTTDRDWGRLRRPGPPPGVGGGLRGIGXXXXXXXXXXXXXXXXXXXXLERLERQSSLDEGKGRDWGKLRHTTPASPDG 1668
L A+++ GP GHLHSSLEPPAGXXXXXXXXXXXXX TD LADSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFGPRGGPPGGAWTRHGRGGGPRGMGDRGDDHHHKDG+RAAPAAGGGMPQETWARGPPEARDRDRDAGGFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGKDY XXXXX XXXKGFGRGDRVDREKDLEKWGKVRKDPTSHRDXXXXXXXGDP FRDRAEFRDRDTTDRDWGRLRRPGPPPGVGGGLRGIGXXXXXXXXXXXXXXXXXXXXL+RLERQSSLDEGKGRDWGKLRHTTPASPDG
Sbjct: 23 LKASSYPGPLGKAAHSAGHLHSSLEPPAGXXXXXXXXXXXXXA---TDGLADSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFGPRGGPPGGAWTRHGRGGGPRGMGDRGDDHHHKDGERAAPAAGGGMPQETWARGPPEARDRDRDAGGFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKDYXXXXXXXXXXXXXXXXKGFGRGDRVDREKDLEKWGKVRKDPTSHRDXXXXXXXGDPTFRDRAEFRDRDTTDRDWGRLRRPGPPPGVGGGLRGIGXXXXXXXXXXXXXXXXXXXXLQRLERQSSLDEGKGRDWGKLRHTTPASPDG 535
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: A0A835Z354_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z354_9STRA) HSP 1 Score: 258 bits (660), Expect = 1.300e-79 Identity = 121/183 (66.12%), Postives = 150/183 (81.97%), Query Frame = 1
Query: 307 LYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
LY+ PED TG QT IQNRYCFWY +KG ++ + +E YES IK + SFQTVEHFWRIYNH+ R DQVP TD HLF+DGIKP WED+ N+RGG ++RLKKGLASR + L+LA+IGEQFDVGNEICGAV+SVRYSEDV+ VWNR+A N E +KIRD ++R+L++P+FVQ+EYRRHQD++
Sbjct: 11 LYDSPEDTTGGTQTAIQNRYCFWYKQKGNKQLT---TEDYESSIKQLASFQTVEHFWRIYNHLQRPDQVPIGTDYHLFKDGIKPAWEDSHNARGGLWMMRLKKGLASR--QELLLAMIGEQFDVGNEICGAVMSVRYSEDVVYVWNRNADNREAADKIRDQIRRILKLPNFVQLEYRRHQDSM 188
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: A0A7S2B9L2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9L2_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.210e-71 Identity = 107/194 (55.15%), Postives = 150/194 (77.32%), Query Frame = 1
Query: 280 SASGPAYES--LYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
+A+ P Y L +EPEDL +QT IQNRY FW+ ++ Q +S ++ +++ ++ + SFQTV+HFWR+Y+H+ RA +P TD HLF+DGIKPTWED SN +GG+ +IRL+KGLA+R WE L+L I+GEQFDVGNE+CGAV+S+RY+ED+IS+WNR+A NTE KIRD ++RLL++P+F+ EY+RH D L
Sbjct: 7 AATAPRYSDAELVDEPEDLE--KQTAIQNRYVFWFMQR--QSKSAVGNDNFDANLQQIASFQTVQHFWRVYDHVQRATSLPQMTDFHLFKDGIKPTWEDPSNKQGGKWIIRLRKGLAARYWEELLLGIVGEQFDVGNEVCGAVLSIRYNEDIISIWNRNADNTEATSKIRDHMRRLLRLPAFISTEYKRHADAL 196
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: A0A6G0XTE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE8_9STRA) HSP 1 Score: 233 bits (594), Expect = 1.730e-68 Identity = 101/168 (60.12%), Postives = 134/168 (79.76%), Query Frame = 1
Query: 352 IQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
IQN YCFWY +K + K + D E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WEDA+N RGG+ +IR++KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IRDT+++LL +P FV +EY+RH +L
Sbjct: 22 IQNTYCFWYMKKNSGK-TLDDQESYEKSIKEIGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKSGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 188
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: A0A1V9Z309_9STRA (Eukaryotic initiation factor 4E n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z309_9STRA) HSP 1 Score: 228 bits (582), Expect = 2.280e-67 Identity = 99/172 (57.56%), Postives = 135/172 (78.49%), Query Frame = 1
Query: 343 QTLIQNRYCFWYYRKGAQ-KESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
+T +QN YCFWY +K K + D E+YE IK + F+TV+ FWR+Y+H++R + +PN TD HLF+ GIKP WEDA+N RGG+ +IR++KG++SR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IRDT+++LL +P FV +EY+RH +L
Sbjct: 4 ETALQNAYCFWYMKKNTGGKAALDDQESYEKSIKELGEFKTVQGFWRLYDHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGISSRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVVLEYKRHDTSL 175
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: W4FZB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZB5_9STRA) HSP 1 Score: 229 bits (583), Expect = 4.620e-67 Identity = 101/179 (56.42%), Postives = 137/179 (76.54%), Query Frame = 1
Query: 319 PEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
P D G + IQN Y FWY +K + K +D E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED +N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N+E +IRDT+++LL +P FV +EY+RH +L
Sbjct: 11 PVDTAG--EVPIQNTYTFWYMKKNSGKALED-QESYEKSIKEISEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDTANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 186
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: A0A485LDV3_9STRA (Aste57867_20004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDV3_9STRA) HSP 1 Score: 229 bits (583), Expect = 8.420e-67 Identity = 99/171 (57.89%), Postives = 135/171 (78.95%), Query Frame = 1
Query: 343 QTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
++ IQN YCFWY +K + K +E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WEDA+N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IRDT+++LL +P FV +EY+RH +L
Sbjct: 19 ESPIQNTYCFWYMKKNSGK-----TESYEKSIKELGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 184
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: D0MYJ6_PHYIT (Eukaryotic initiation factor 4E, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0MYJ6_PHYIT) HSP 1 Score: 226 bits (575), Expect = 2.320e-66 Identity = 99/174 (56.90%), Postives = 135/174 (77.59%), Query Frame = 1
Query: 334 GTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
GT +T IQN Y FWY ++ +K SE+YE IK + F+TV+ FW+IYNH++R + +PN D HLF+ GIKP WED++N RGG+ ++RL+KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IRDT++++L +P FV +EY+RH +L
Sbjct: 18 GTTETPIQNMYTFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDSANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 189
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: A0A024TVS7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVS7_9STRA) HSP 1 Score: 226 bits (577), Expect = 2.540e-66 Identity = 105/194 (54.12%), Postives = 142/194 (73.20%), Query Frame = 1
Query: 274 ADSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
AD SG A D TG ++ IQN Y FWY +K + K +D E+YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IRDT++++L +P F +EY+RH +L
Sbjct: 3 ADRPSGTA--------SDATG--ESPIQNTYTFWYMKKNSGKALED-QESYEKSIKEIAEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDSANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFASLEYKRHDTSL 185
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Match: G4YG94_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YG94_PHYSP) HSP 1 Score: 223 bits (569), Expect = 1.530e-65 Identity = 98/174 (56.32%), Postives = 134/174 (77.01%), Query Frame = 1
Query: 334 GTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 855
G+ +T IQN Y FWY ++ +K SE+YE IK + F+TV+ FW+IYNH++R + +PN D HLF+ GIKP WED +N RGG+ ++RL+KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IRDT++++L +P FV +EY+RH +L
Sbjct: 12 GSAETPIQNMYSFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 183 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1479.2792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1479.2792.1 >prot_E-siliculosus-1a_F_contig1479.2792.1 ID=prot_E-siliculosus-1a_F_contig1479.2792.1|Name=mRNA_E-siliculosus-1a_F_contig1479.2792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=513bp METLLANNHLGPDEGHLHSSLEPPAGGDHSNNNGGGGGGAAAATDDLADSback to top mRNA from alignment at E-siliculosus-1a_F_contig1479:316..7565+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1479.2792.1 ID=mRNA_E-siliculosus-1a_F_contig1479.2792.1|Name=mRNA_E-siliculosus-1a_F_contig1479.2792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7250bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1479:316..7565+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1479:316..7565+ >mRNA_E-siliculosus-1a_F_contig1479.2792.1 ID=mRNA_E-siliculosus-1a_F_contig1479.2792.1|Name=mRNA_E-siliculosus-1a_F_contig1479.2792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3078bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1479:316..7565+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |