mRNA_E-siliculosus-1a_F_contig14769.2781.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14769.2781.1
Unique NamemRNA_E-siliculosus-1a_F_contig14769.2781.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A265E350_9GAMM (DNA-binding response regulator n=12 Tax=Halomonas TaxID=2745 RepID=A0A265E350_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 2.660e-13
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTRNVLIIEDNPGIGEL+RIHVAELGM PVLCER
Sbjct:    1 MTRNVLIIEDNPGIGELVRIHVAELGMNPVLCER 34          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A060B7N8_9GAMM (Chemotaxis protein CheY n=13 Tax=Halomonas TaxID=2745 RepID=A0A060B7N8_9GAMM)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-12
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTRNVLIIEDNPGIGEL+R+HVAELGM P+LCER
Sbjct:    1 MTRNVLIIEDNPGIGELVRMHVAELGMNPILCER 34          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A099PAS2_9GAMM (Chemotaxis protein CheY n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A099PAS2_9GAMM)

HSP 1 Score: 67.4 bits (163), Expect = 1.430e-12
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTRNVLI+EDNPGIGEL+R+HVAELGM P+LCER
Sbjct:    1 MTRNVLIVEDNPGIGELVRMHVAELGMNPILCER 34          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: UPI001F3E5713 (response regulator transcription factor n=2 Tax=Halomonas TaxID=2745 RepID=UPI001F3E5713)

HSP 1 Score: 63.9 bits (154), Expect = 2.980e-11
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTRNVLI+EDNPGIGEL+ +HV ELGM PVLCER
Sbjct:    1 MTRNVLIVEDNPGIGELVSMHVTELGMNPVLCER 34          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: W5YUL1_9GAMM (Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=10 Tax=Marinobacteraceae TaxID=2887365 RepID=W5YUL1_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 1.130e-10
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTRNVLI+EDNPGIGEL+R+HVA+LGM  VLC+R
Sbjct:    1 MTRNVLIVEDNPGIGELVRMHVADLGMNAVLCDR 34          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: UPI002002E647 (response regulator transcription factor n=1 Tax=Marinobacter goseongensis TaxID=453838 RepID=UPI002002E647)

HSP 1 Score: 62.0 bits (149), Expect = 1.590e-10
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTRN+LI+EDNPGIGEL+R+ VA+LGM PVLC+R
Sbjct:    1 MTRNILIVEDNPGIGELVRMQVADLGMNPVLCDR 34          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: E4PK01_MARAH (Two-component response regulator n=27 Tax=Marinobacteraceae TaxID=2887365 RepID=E4PK01_MARAH)

HSP 1 Score: 55.1 bits (131), Expect = 5.800e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTR VLIIEDNPGIGEL+R+ V++LGM PVL +R
Sbjct:    1 MTRTVLIIEDNPGIGELVRMQVSDLGMKPVLVDR 34          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: M7D9C6_9GAMM (Two-component response regulator n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=M7D9C6_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.120e-7
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCE 99
            MTR VLIIEDNPGIGEL+R+ VA+LGM PVL +
Sbjct:    1 MTRTVLIIEDNPGIGELVRMQVADLGMEPVLVD 33          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A1H3C4B0_9GAMM (DNA-binding response regulator, OmpR family, contains REC and winged-helix (WHTH) domain n=2 Tax=Marinobacter mobilis TaxID=488533 RepID=A0A1H3C4B0_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 1.590e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
            MTR VLIIEDNPGI +L+R+HV +LGMT + C+R
Sbjct:    5 MTRTVLIIEDNPGIAQLVRMHVEDLGMTAIHCDR 38          
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A455VH29_9GAMM (Uncharacterized protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455VH29_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 1.730e-7
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 1
Query:    1 MTRNVLIIEDNPGIGELIRIHVAEL 75
            MTRNVLIIEDNPGIGEL+R+HVAEL
Sbjct:    1 MTRNVLIIEDNPGIGELVRMHVAEL 25          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A265E350_9GAMM2.660e-1394.12DNA-binding response regulator n=12 Tax=Halomonas ... [more]
A0A060B7N8_9GAMM1.020e-1288.24Chemotaxis protein CheY n=13 Tax=Halomonas TaxID=2... [more]
A0A099PAS2_9GAMM1.430e-1285.29Chemotaxis protein CheY n=4 Tax=Proteobacteria Tax... [more]
UPI001F3E57132.980e-1182.35response regulator transcription factor n=2 Tax=Ha... [more]
W5YUL1_9GAMM1.130e-1079.41Alkaline phosphatase synthesis transcriptional reg... [more]
UPI002002E6471.590e-1076.47response regulator transcription factor n=1 Tax=Ma... [more]
E4PK01_MARAH5.800e-873.53Two-component response regulator n=27 Tax=Marinoba... [more]
M7D9C6_9GAMM1.120e-775.76Two-component response regulator n=4 Tax=Gammaprot... [more]
A0A1H3C4B0_9GAMM1.590e-767.65DNA-binding response regulator, OmpR family, conta... [more]
A0A455VH29_9GAMM1.730e-792.00Uncharacterized protein n=1 Tax=Halomonas axialens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14769contigE-siliculosus-1a_F_contig14769:3..104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size102
Model size102
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.T
EggNOG OGs1MU3A@1224,1RQAV@1236,1XJCN@135619,COG0745@1,COG0745@2
EggNOG free text desc.Transcriptional regulatory protein, C terminal
Seed eggNOG ortholog1121940.AUDZ01000005_gene1967
Seed ortholog evalue3.9e-10
Seed ortholog score69.3
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.7854905-CDS-E-siliculosus-1a_F_contig14769:2..1041622927985.7854905-CDS-E-siliculosus-1a_F_contig14769:2..104Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14769 3..104 -
1696318763.6461308-CDS-E-siliculosus-1a_F_contig14769:2..1041696318763.6461308-CDS-E-siliculosus-1a_F_contig14769:2..104Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14769 3..104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14769.2781.1prot_E-siliculosus-1a_F_contig14769.2781.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14769 3..104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14769.2781.1

>prot_E-siliculosus-1a_F_contig14769.2781.1 ID=prot_E-siliculosus-1a_F_contig14769.2781.1|Name=mRNA_E-siliculosus-1a_F_contig14769.2781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=34bp
MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER
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mRNA from alignment at E-siliculosus-1a_F_contig14769:3..104-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14769.2781.1 ID=mRNA_E-siliculosus-1a_F_contig14769.2781.1|Name=mRNA_E-siliculosus-1a_F_contig14769.2781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=102bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14769:3..104- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACACGAAACGTACTGATTATTGAGGACAACCCAGGTATTGGCGAGCT CATCCGCATACACGTGGCTGAACTCGGCATGACCCCGGTTCTTTGTGAAC GG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14769:3..104-

>mRNA_E-siliculosus-1a_F_contig14769.2781.1 ID=mRNA_E-siliculosus-1a_F_contig14769.2781.1|Name=mRNA_E-siliculosus-1a_F_contig14769.2781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=204bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14769:3..104- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACACGAAACGTACTGATTATTGAGGACAACCCAGGTATTGGCGAGCT
CATCCGCATACACGTGGCTGAACTCGGCATGACCCCGGTTCTTTGTGAAC
GGATGACACGAAACGTACTGATTATTGAGGACAACCCAGGTATTGGCGAG
CTCATCCGCATACACGTGGCTGAACTCGGCATGACCCCGGTTCTTTGTGA
ACGG
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