mRNA_E-siliculosus-1a_F_contig14769.2781.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A265E350_9GAMM (DNA-binding response regulator n=12 Tax=Halomonas TaxID=2745 RepID=A0A265E350_9GAMM) HSP 1 Score: 69.3 bits (168), Expect = 2.660e-13 Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTRNVLIIEDNPGIGEL+RIHVAELGM PVLCER
Sbjct: 1 MTRNVLIIEDNPGIGELVRIHVAELGMNPVLCER 34
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A060B7N8_9GAMM (Chemotaxis protein CheY n=13 Tax=Halomonas TaxID=2745 RepID=A0A060B7N8_9GAMM) HSP 1 Score: 67.8 bits (164), Expect = 1.020e-12 Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTRNVLIIEDNPGIGEL+R+HVAELGM P+LCER
Sbjct: 1 MTRNVLIIEDNPGIGELVRMHVAELGMNPILCER 34
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A099PAS2_9GAMM (Chemotaxis protein CheY n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A099PAS2_9GAMM) HSP 1 Score: 67.4 bits (163), Expect = 1.430e-12 Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTRNVLI+EDNPGIGEL+R+HVAELGM P+LCER
Sbjct: 1 MTRNVLIVEDNPGIGELVRMHVAELGMNPILCER 34
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: UPI001F3E5713 (response regulator transcription factor n=2 Tax=Halomonas TaxID=2745 RepID=UPI001F3E5713) HSP 1 Score: 63.9 bits (154), Expect = 2.980e-11 Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTRNVLI+EDNPGIGEL+ +HV ELGM PVLCER
Sbjct: 1 MTRNVLIVEDNPGIGELVSMHVTELGMNPVLCER 34
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: W5YUL1_9GAMM (Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=10 Tax=Marinobacteraceae TaxID=2887365 RepID=W5YUL1_9GAMM) HSP 1 Score: 62.4 bits (150), Expect = 1.130e-10 Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTRNVLI+EDNPGIGEL+R+HVA+LGM VLC+R
Sbjct: 1 MTRNVLIVEDNPGIGELVRMHVADLGMNAVLCDR 34
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: UPI002002E647 (response regulator transcription factor n=1 Tax=Marinobacter goseongensis TaxID=453838 RepID=UPI002002E647) HSP 1 Score: 62.0 bits (149), Expect = 1.590e-10 Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTRN+LI+EDNPGIGEL+R+ VA+LGM PVLC+R
Sbjct: 1 MTRNILIVEDNPGIGELVRMQVADLGMNPVLCDR 34
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: E4PK01_MARAH (Two-component response regulator n=27 Tax=Marinobacteraceae TaxID=2887365 RepID=E4PK01_MARAH) HSP 1 Score: 55.1 bits (131), Expect = 5.800e-8 Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTR VLIIEDNPGIGEL+R+ V++LGM PVL +R
Sbjct: 1 MTRTVLIIEDNPGIGELVRMQVSDLGMKPVLVDR 34
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: M7D9C6_9GAMM (Two-component response regulator n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=M7D9C6_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 1.120e-7 Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCE 99
MTR VLIIEDNPGIGEL+R+ VA+LGM PVL +
Sbjct: 1 MTRTVLIIEDNPGIGELVRMQVADLGMEPVLVD 33
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A1H3C4B0_9GAMM (DNA-binding response regulator, OmpR family, contains REC and winged-helix (WHTH) domain n=2 Tax=Marinobacter mobilis TaxID=488533 RepID=A0A1H3C4B0_9GAMM) HSP 1 Score: 53.9 bits (128), Expect = 1.590e-7 Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCER 102
MTR VLIIEDNPGI +L+R+HV +LGMT + C+R
Sbjct: 5 MTRTVLIIEDNPGIAQLVRMHVEDLGMTAIHCDR 38
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Match: A0A455VH29_9GAMM (Uncharacterized protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455VH29_9GAMM) HSP 1 Score: 50.8 bits (120), Expect = 1.730e-7 Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 1
Query: 1 MTRNVLIIEDNPGIGELIRIHVAEL 75
MTRNVLIIEDNPGIGEL+R+HVAEL
Sbjct: 1 MTRNVLIIEDNPGIGELVRMHVAEL 25 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14769.2781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14769.2781.1 >prot_E-siliculosus-1a_F_contig14769.2781.1 ID=prot_E-siliculosus-1a_F_contig14769.2781.1|Name=mRNA_E-siliculosus-1a_F_contig14769.2781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=34bp MTRNVLIIEDNPGIGELIRIHVAELGMTPVLCERback to top mRNA from alignment at E-siliculosus-1a_F_contig14769:3..104- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14769.2781.1 ID=mRNA_E-siliculosus-1a_F_contig14769.2781.1|Name=mRNA_E-siliculosus-1a_F_contig14769.2781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=102bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14769:3..104- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14769:3..104- >mRNA_E-siliculosus-1a_F_contig14769.2781.1 ID=mRNA_E-siliculosus-1a_F_contig14769.2781.1|Name=mRNA_E-siliculosus-1a_F_contig14769.2781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=204bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14769:3..104- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |