mRNA_E-siliculosus-1a_F_contig14751.2774.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14751.2774.1
Unique NamemRNA_E-siliculosus-1a_F_contig14751.2774.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A3T1DSJ7_9GAMM (Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Halomonas olivaria TaxID=390919 RepID=A0A3T1DSJ7_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 9.310e-32
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ LGTPKSSRAVGNAVGANPIALWIPCHRVI
Sbjct:  138 TNFQIAVWRALLTIPEGQLASYSHIAQALGTPKSSRAVGNAVGANPIALWIPCHRVI 194
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BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: UPI001F100F38 (methylated-DNA--[protein]-cysteine S-methyltransferase n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F100F38)

HSP 1 Score: 118 bits (296), Expect = 2.170e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ+LGTPKSSRAVGNAVGANPIALWIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIAQSLGTPKSSRAVGNAVGANPIALWIPCHRVI 247
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BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A7G7Z970_9GAMM (Methylated-DNA--[protein]-cysteine S-methyltransferase n=6 Tax=Halomonas TaxID=2745 RepID=A0A7G7Z970_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 3.120e-31
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ LGTPKSSRAVGNAVGANPIALWIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIAQALGTPKSSRAVGNAVGANPIALWIPCHRVI 247
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A1J8PAI2_9GAMM (6-O-methylguanine DNA methyltransferase n=1 Tax=Halomonas sp. QHL1 TaxID=1123773 RepID=A0A1J8PAI2_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 3.120e-31
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ LGTPKSSRAVGNAVGANPIALWIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIAQALGTPKSSRAVGNAVGANPIALWIPCHRVI 247
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BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A7Z7MWQ3_9GAMM (AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase n=1 Tax=Halomonas sp. hl-4 TaxID=1761789 RepID=A0A7Z7MWQ3_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 3.120e-31
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ LGTPKSSRAVGNAVGANPIALWIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIAQALGTPKSSRAVGNAVGANPIALWIPCHRVI 247
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: UPI00201F2E3A (methylated-DNA--[protein]-cysteine S-methyltransferase n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201F2E3A)

HSP 1 Score: 117 bits (294), Expect = 4.310e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQ+AVWRALLTIPEGQLASYSHIAQ LGTPKSSRAVGNAVGANPIALWIPCHRVI
Sbjct:  193 TNFQVAVWRALLTIPEGQLASYSHIAQVLGTPKSSRAVGNAVGANPIALWIPCHRVI 249
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BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A7Z0RWH0_9GAMM (Methylated-DNA--[protein]-cysteine S-methyltransferase n=1 Tax=Halomonas salicampi TaxID=1449798 RepID=A0A7Z0RWH0_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 4.400e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ LGTPKSSRAVGNAVGANP+ALWIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIAQALGTPKSSRAVGNAVGANPVALWIPCHRVI 247
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A511UUX3_9GAMM (Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511UUX3_9GAMM)

HSP 1 Score: 117 bits (292), Expect = 7.700e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ LGTP+SSRAVGNAVGANPIALWIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIAQALGTPRSSRAVGNAVGANPIALWIPCHRVI 247
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A265DTY4_9GAMM (6-O-methylguanine DNA methyltransferase n=4 Tax=Halomonas TaxID=2745 RepID=A0A265DTY4_9GAMM)

HSP 1 Score: 117 bits (292), Expect = 8.740e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIAQ LGTPKSSRAVGNAVGANPIA+WIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIAQALGTPKSSRAVGNAVGANPIAVWIPCHRVI 247
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Match: A0A7Z0LSR0_9GAMM (Methylated-DNA--[protein]-cysteine S-methyltransferase n=5 Tax=Halomonas TaxID=2745 RepID=A0A7Z0LSR0_9GAMM)

HSP 1 Score: 116 bits (291), Expect = 1.230e-30
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALWIPCHRVI 171
            TNFQIAVWRALLTIPEGQLASYSHIA+ LGTPKSSRAVGNAVGANPIALWIPCHRVI
Sbjct:  191 TNFQIAVWRALLTIPEGQLASYSHIARALGTPKSSRAVGNAVGANPIALWIPCHRVI 247
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3T1DSJ7_9GAMM9.310e-3298.25Methylated-DNA--protein-cysteine methyltransferase... [more]
UPI001F100F382.170e-3198.25methylated-DNA--[protein]-cysteine S-methyltransfe... [more]
A0A7G7Z970_9GAMM3.120e-3198.25Methylated-DNA--[protein]-cysteine S-methyltransfe... [more]
A0A1J8PAI2_9GAMM3.120e-3198.256-O-methylguanine DNA methyltransferase n=1 Tax=Ha... [more]
A0A7Z7MWQ3_9GAMM3.120e-3198.25AraC family transcriptional regulator, regulatory ... [more]
UPI00201F2E3A4.310e-3196.49methylated-DNA--[protein]-cysteine S-methyltransfe... [more]
A0A7Z0RWH0_9GAMM4.400e-3196.49Methylated-DNA--[protein]-cysteine S-methyltransfe... [more]
A0A511UUX3_9GAMM7.700e-3196.49Methylated-DNA--protein-cysteine methyltransferase... [more]
A0A265DTY4_9GAMM8.740e-3196.496-O-methylguanine DNA methyltransferase n=4 Tax=Ha... [more]
A0A7Z0LSR0_9GAMM1.230e-3096.49Methylated-DNA--[protein]-cysteine S-methyltransfe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14751contigE-siliculosus-1a_F_contig14751:808..978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size171
Model size171
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko01000,ko03000,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.K
EC2.1.1.63
EggNOG OGs1N2YQ@1224,1RPR3@1236,1XJAT@135619,COG0350@1,COG0350@2,COG2207@1,COG2207@2
EggNOG free text desc.6-O-methylguanine DNA methyltransferase, DNA binding domain
KEGG koko:K00567,ko:K10778
Preferred nameada
Seed eggNOG ortholog1504981.KO116_2064
Seed ortholog evalue2.1e-24
Seed ortholog score117.5
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.0334804-CDS-E-siliculosus-1a_F_contig14751:807..9781622927985.0334804-CDS-E-siliculosus-1a_F_contig14751:807..978Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14751 808..978 -
1696318763.2665377-CDS-E-siliculosus-1a_F_contig14751:807..9781696318763.2665377-CDS-E-siliculosus-1a_F_contig14751:807..978Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14751 808..978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14751.2774.1prot_E-siliculosus-1a_F_contig14751.2774.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14751 808..978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14751.2774.1

>prot_E-siliculosus-1a_F_contig14751.2774.1 ID=prot_E-siliculosus-1a_F_contig14751.2774.1|Name=mRNA_E-siliculosus-1a_F_contig14751.2774.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
TNFQIAVWRALLTIPEGQLASYSHIAQTLGTPKSSRAVGNAVGANPIALW
IPCHRVI
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mRNA from alignment at E-siliculosus-1a_F_contig14751:808..978-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14751.2774.1 ID=mRNA_E-siliculosus-1a_F_contig14751.2774.1|Name=mRNA_E-siliculosus-1a_F_contig14751.2774.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14751:808..978- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCAACTTCCAAATTGCGGTTTGGCGGGCACTGCTGACAATTCCAGAAGG
TCAGCTTGCCAGTTATTCTCATATTGCTCAGACGCTGGGCACTCCTAAGT
CTTCCCGTGCAGTCGGCAATGCGGTGGGTGCTAACCCAATCGCGCTGTGG
ATCCCCTGCCACCGGGTGATT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14751:808..978-

>mRNA_E-siliculosus-1a_F_contig14751.2774.1 ID=mRNA_E-siliculosus-1a_F_contig14751.2774.1|Name=mRNA_E-siliculosus-1a_F_contig14751.2774.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14751:808..978- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCAACTTCCAAATTGCGGTTTGGCGGGCACTGCTGACAATTCCAGAAGG
TCAGCTTGCCAGTTATTCTCATATTGCTCAGACGCTGGGCACTCCTAAGT
CTTCCCGTGCAGTCGGCAATGCGGTGGGTGCTAACCCAATCGCGCTGTGG
ATCCCCTGCCACCGGGTGATTACCAACTTCCAAATTGCGGTTTGGCGGGC
ACTGCTGACAATTCCAGAAGGTCAGCTTGCCAGTTATTCTCATATTGCTC
AGACGCTGGGCACTCCTAAGTCTTCCCGTGCAGTCGGCAATGCGGTGGGT
GCTAACCCAATCGCGCTGTGGATCCCCTGCCACCGGGTGATT
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