mRNA_E-siliculosus-1a_F_contig14751.2773.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A1U9R9A9_9GAMM (Phosphodiesterase n=2 Tax=root TaxID=1 RepID=A0A1U9R9A9_9GAMM) HSP 1 Score: 447 bits (1149), Expect = 1.280e-157 Identity = 209/230 (90.87%), Postives = 221/230 (96.09%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFG P+EYATFKQ+LAELTLPVYLIPGNHDDRQ+LR AFP+HRYLFQ+ DYLQWVVDDYPV IVGLDSSVPGKPHGELSEASLQWLDATLAEQP KPTLVMVHHHPFVSGIDHMDRQPL+HA+ALA VIGK+ VERVLCGHLHRSIQARFANT+A+SCPGVSHQVSLDL PDGP+SFQLEPPGYLLHQWS+ANGMVTHQGFIEHYPGPFPFYDANGLID
Sbjct: 59 DLVLISGDLVDFGHPDEYATFKQILAELTLPVYLIPGNHDDRQNLRDAFPEHRYLFQHTDYLQWVVDDYPVSIVGLDSSVPGKPHGELSEASLQWLDATLAEQPEKPTLVMVHHHPFVSGIDHMDRQPLQHANALAEVIGKYAQVERVLCGHLHRSIQARFANTMAISCPGVSHQVSLDLTPDGPASFQLEPPGYLLHQWSSANGMVTHQGFIEHYPGPFPFYDANGLID 288
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: UPI001F0DF10A (phosphodiesterase n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F0DF10A) HSP 1 Score: 435 bits (1118), Expect = 5.470e-153 Identity = 200/230 (86.96%), Postives = 216/230 (93.91%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFGLPEEYATFKQ+LAELTLPVYLIPGNHD+RQHL AFP+HRYLFQ+ YLQWVVDDYPVR++GLDSSVPGKPHGELS+ SL WLDATLAE+P KPTLVMVHHHPFVSGIDHMDRQPL+ ++ALA VIG+H+ VERVLCGHLHRS+QARF NTLA+SCPGVSHQVSLDLNPDGPS F LEPPGYLLHQWS ANGM+THQGFIEHYPGPFPFYDANGLID
Sbjct: 53 DLVLISGDLVDFGLPEEYATFKQILAELTLPVYLIPGNHDERQHLCAAFPEHRYLFQHHHYLQWVVDDYPVRLIGLDSSVPGKPHGELSDESLAWLDATLAEKPEKPTLVMVHHHPFVSGIDHMDRQPLKQSTALAEVIGQHSQVERVLCGHLHRSVQARFGNTLAISCPGVSHQVSLDLNPDGPSRFLLEPPGYLLHQWSAANGMITHQGFIEHYPGPFPFYDANGLID 282
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A0D6E910_9GAMM (3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=19 Tax=Halomonas TaxID=2745 RepID=A0A0D6E910_9GAMM) HSP 1 Score: 429 bits (1102), Expect = 1.860e-150 Identity = 200/230 (86.96%), Postives = 213/230 (92.61%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFG +EYATFKQ+LAELTLPVY+IPGNHDDR HLR AFP+HRYLFQ++DYLQWV++DYPVR+VGLDSSVPGKPHGELS+ SLQ LD TLAEQP KPTLVMVHHHPFVSGIDHMDRQPL+ ALA VIGKH VERVLCGHLHRSIQARFANTLA+SCPGVSHQVSLDL+PDGPSSFQLEPPGYLLHQWS NGMVTHQGFIE YPGPFPFYDANGLID
Sbjct: 59 DLVLISGDLVDFGHSDEYATFKQILAELTLPVYVIPGNHDDRDHLRAAFPEHRYLFQHRDYLQWVIEDYPVRLVGLDSSVPGKPHGELSDESLQXLDTTLAEQPEKPTLVMVHHHPFVSGIDHMDRQPLKRPDALADVIGKHAQVERVLCGHLHRSIQARFANTLAISCPGVSHQVSLDLSPDGPSSFQLEPPGYLLHQWSATNGMVTHQGFIERYPGPFPFYDANGLID 288
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A117KHP9_9GAMM (Metallophosphoesterase n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A117KHP9_9GAMM) HSP 1 Score: 425 bits (1093), Expect = 4.360e-149 Identity = 197/230 (85.65%), Postives = 211/230 (91.74%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFG P+EYATFKQ+LA+LTLPV+L PGNHDDRQHLR AFP+HRYLFQ+ DY+QWVVDDYPVR+VGLDSSVPGKPHGELS+ SL+WLDATLAEQP KPTLVMVHHHPFVSGI HMDRQPL+ ALA VI KH VERVLCGHLHRSIQ RFANTLA+SCPGVSHQVSLDL PDGPSSFQLEPPGYLLHQWS NG+VTHQGFIE YPGPFPF+DANGLID
Sbjct: 59 DLVLISGDLVDFGHPDEYATFKQILADLTLPVFLTPGNHDDRQHLRAAFPEHRYLFQHSDYVQWVVDDYPVRLVGLDSSVPGKPHGELSDESLRWLDATLAEQPEKPTLVMVHHHPFVSGIAHMDRQPLKRPDALAEVISKHPQVERVLCGHLHRSIQTRFANTLAISCPGVSHQVSLDLTPDGPSSFQLEPPGYLLHQWSATNGLVTHQGFIERYPGPFPFFDANGLID 288
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A7Z7MWV8_9GAMM (3',5'-cyclic AMP phosphodiesterase CpdA n=1 Tax=Halomonas sp. hl-4 TaxID=1761789 RepID=A0A7Z7MWV8_9GAMM) HSP 1 Score: 425 bits (1093), Expect = 4.360e-149 Identity = 195/230 (84.78%), Postives = 212/230 (92.17%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFG P+EYATFK +LA+LTLPVYLIPGNHDDR HLR AFP+HRYLFQ++DYLQWVVDDYPVR+VGLDSSVPGKPHGELS+ SLQWLD TL+EQP KPTLVMVHHHPF+SGIDHMDRQPL+ ALA VIG+H VER+LCGHLHRSIQARFANTLA+SCPGVSHQVSLDL PDGP+ FQLEPPGYLLH WS +GMVTHQGFIEHYPGPFPFYDA+GLID
Sbjct: 59 DLVLISGDLVDFGHPDEYATFKHILADLTLPVYLIPGNHDDRHHLRNAFPEHRYLFQHRDYLQWVVDDYPVRLVGLDSSVPGKPHGELSDESLQWLDTTLSEQPDKPTLVMVHHHPFMSGIDHMDRQPLKRPDALADVIGQHPQVERMLCGHLHRSIQARFANTLAISCPGVSHQVSLDLTPDGPAHFQLEPPGYLLHHWSATSGMVTHQGFIEHYPGPFPFYDASGLID 288
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: UPI001CF374CA (phosphodiesterase n=1 Tax=Halomonas sp. SBBP1 TaxID=2599306 RepID=UPI001CF374CA) HSP 1 Score: 424 bits (1091), Expect = 8.790e-149 Identity = 196/230 (85.22%), Postives = 211/230 (91.74%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFG P+EYATFKQLLA+LTLPVYLIPGNHDDRQHLR AFP+HRYLFQ++DYLQWVVDDYPVR++GLDSSVP KPHG+LS+ SL+WLD TL EQP KPTLVMVHHHPFVSGIDHMDRQPL+ ALA VIGKH +ERVLCGHLHRSIQARFANTL +SCPGVSHQVSLDL PDGP+ FQLEPPGYLLHQWS ANGMVTHQGFI+ Y GPFPFYDANGLID
Sbjct: 59 DLVLISGDLVDFGHPDEYATFKQLLADLTLPVYLIPGNHDDRQHLRHAFPEHRYLFQHRDYLQWVVDDYPVRLIGLDSSVPDKPHGKLSDESLEWLDTTLTEQPDKPTLVMVHHHPFVSGIDHMDRQPLKRPEALADVIGKHPQIERVLCGHLHRSIQARFANTLVISCPGVSHQVSLDLTPDGPAHFQLEPPGYLLHQWSAANGMVTHQGFIDPYSGPFPFYDANGLID 288
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A1A9R813_9GAMM (Phosphodiesterase n=4 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1A9R813_9GAMM) HSP 1 Score: 421 bits (1081), Expect = 2.930e-147 Identity = 196/230 (85.22%), Postives = 208/230 (90.43%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFG P+EYATF Q+LA+L LPVYLIPGNHDDRQHLR AFP+HRYLFQ+ YLQWVVDDYPVR+VGLDSSVP KPHGELS+ SLQWLD TLA QP KPTLVMVHHHPFVSGIDHMDRQPL+ ALA VIG+H VERVLCGHLHRSIQARFANTLA+SCPGVSHQVSLDL PDGP+ FQLEPPGYLLH WS ANGMVTHQGFI+ YPGPFPFYDANGLID
Sbjct: 59 DLVLISGDLVDFGHPDEYATFTQILADLVLPVYLIPGNHDDRQHLRAAFPEHRYLFQHNGYLQWVVDDYPVRLVGLDSSVPDKPHGELSDESLQWLDKTLAAQPDKPTLVMVHHHPFVSGIDHMDRQPLKRPEALADVIGQHAQVERVLCGHLHRSIQARFANTLAISCPGVSHQVSLDLTPDGPAHFQLEPPGYLLHHWSAANGMVTHQGFIDSYPGPFPFYDANGLID 288
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A2A3XET4_9GAMM (Phosphodiesterase n=2 Tax=Halomonas TaxID=2745 RepID=A0A2A3XET4_9GAMM) HSP 1 Score: 417 bits (1073), Expect = 4.850e-146 Identity = 193/230 (83.91%), Postives = 210/230 (91.30%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
+LVLISGDLVDFG PEEYATFK +L++LTLPVYLIPGNHDDRQ LR AFP+HRYLFQ++D+L WV+DDYPVR+VGLDSSVPGKP+GELS ASL+WLD L EQP KPTLVMVHHHPFVSGIDHMD+QPL+HASAL VIGKH VERVLCGHLHRSIQARF NTLA+SCPGVSHQVSLDL PDGPS FQLEPPGYLLHQWS A+GM+THQGFI YPGPFPFYDANGLID
Sbjct: 59 NLVLISGDLVDFGHPEEYATFKHILSDLTLPVYLIPGNHDDRQSLRAAFPEHRYLFQHRDFLHWVIDDYPVRLVGLDSSVPGKPYGELSNASLEWLDKILTEQPEKPTLVMVHHHPFVSGIDHMDQQPLKHASALENVIGKHAQVERVLCGHLHRSIQARFGNTLAISCPGVSHQVSLDLTPDGPSRFQLEPPGYLLHQWSAAHGMITHQGFIACYPGPFPFYDANGLID 288
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A6F8X6L7_9GAMM (3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=2 Tax=Halomonas TaxID=2745 RepID=A0A6F8X6L7_9GAMM) HSP 1 Score: 417 bits (1071), Expect = 1.210e-145 Identity = 197/229 (86.03%), Postives = 205/229 (89.52%), Query Frame = 1
Query: 4 LVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
LVLISGDLVDFG PEEYATFKQL+AELTLPVYLIPGNHDDRQHLR AFPDHRYLFQ+QDYLQWVVDDYPVR+VGLDSSVPGKPHGELS SLQWLDATLAE P KPTLVMVHHHPFVSGI HMDRQPL ALA VI KH VERVLCGHLHRSIQARFANTLA+SCPGVSHQVSLDL P+GP+ FQLEP GYLLH WS +G VTHQGFI+ YPGPFPFYD NGLID
Sbjct: 66 LVLISGDLVDFGHPEEYATFKQLMAELTLPVYLIPGNHDDRQHLRAAFPDHRYLFQHQDYLQWVVDDYPVRLVGLDSSVPGKPHGELSNESLQWLDATLAEHPEKPTLVMVHHHPFVSGIGHMDRQPLNRPDALADVIRKHDQVERVLCGHLHRSIQARFANTLAMSCPGVSHQVSLDLTPNGPAHFQLEPTGYLLHHWSATHGTVTHQGFIDQYPGPFPFYDENGLID 294
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Match: A0A1R4HWW0_9GAMM (3',5'-cyclic-nucleotide phosphodiesterase n=5 Tax=Halomonas TaxID=2745 RepID=A0A1R4HWW0_9GAMM) HSP 1 Score: 401 bits (1031), Expect = 7.890e-140 Identity = 186/230 (80.87%), Postives = 202/230 (87.83%), Query Frame = 1
Query: 1 DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPDHRYLFQYQDYLQWVVDDYPVRIVGLDSSVPGKPHGELSEASLQWLDATLAEQPTKPTLVMVHHHPFVSGIDHMDRQPLRHASALAAVIGKHTHVERVLCGHLHRSIQARFANTLAVSCPGVSHQVSLDLNPDGPSSFQLEPPGYLLHQWSTANGMVTHQGFIEHYPGPFPFYDANGLID 690
DLVLISGDLVDFG P+EYATFKQ+LAELTLPVYLIPGNHDDR HLR AFP+H YLFQ YLQWV+DDYPVR+VGLDSSVPG+P+GELSE SL WLD TLAEQP PTLVM+HHHPF+SGIDHMDRQPL+ ALA +I KH VERVLCGH+HR+IQARF NTLA+SCPGVSH VSLDL PD PS FQLEPPGYLLHQWS GMVTHQGFI+ YPGP+PFYDANGLID
Sbjct: 47 DLVLISGDLVDFGHPDEYATFKQILAELTLPVYLIPGNHDDRDHLRTAFPEHDYLFQDAHYLQWVIDDYPVRLVGLDSSVPGEPYGELSEESLCWLDKTLAEQPQTPTLVMLHHHPFISGIDHMDRQPLKQPHALAEIINKHAQVERVLCGHVHRTIQARFGNTLAISCPGVSHYVSLDLTPDSPSRFQLEPPGYLLHQWSAEAGMVTHQGFIKQYPGPYPFYDANGLID 276 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14751.2773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14751.2773.1 >prot_E-siliculosus-1a_F_contig14751.2773.1 ID=prot_E-siliculosus-1a_F_contig14751.2773.1|Name=mRNA_E-siliculosus-1a_F_contig14751.2773.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=231bp DLVLISGDLVDFGLPEEYATFKQLLAELTLPVYLIPGNHDDRQHLRKAFPback to top mRNA from alignment at E-siliculosus-1a_F_contig14751:2..694+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14751.2773.1 ID=mRNA_E-siliculosus-1a_F_contig14751.2773.1|Name=mRNA_E-siliculosus-1a_F_contig14751.2773.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=693bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14751:2..694+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14751:2..694+ >mRNA_E-siliculosus-1a_F_contig14751.2773.1 ID=mRNA_E-siliculosus-1a_F_contig14751.2773.1|Name=mRNA_E-siliculosus-1a_F_contig14751.2773.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1386bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14751:2..694+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |