mRNA_E-siliculosus-1a_F_contig1475.2772.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1475.2772.1
Unique NamemRNA_E-siliculosus-1a_F_contig1475.2772.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Match: D7FKY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY9_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.210e-38
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 3 
Query:   30 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARLSNGNNGSSPSGGDGRGE 281
            MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARLSN  NGSSPSGG GRGE
Sbjct:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARLSN--NGSSPSGGGGRGE 82
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BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Match: W7U0Z4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Z4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.260e-9
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:   45 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARL 230
            F  ++++ VPA  VVGA MELFMLNTGFYDVALRKEAERR E   E +    ++E  +R +L
Sbjct:    4 FLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERTKRRQL 65
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BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Match: K8Z8J1_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8J1_NANGC)

HSP 1 Score: 63.5 bits (153), Expect = 5.670e-9
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:   45 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARL 230
            F  ++++ VPA  VVGA MELFMLNTGFYDVALRKEAERR E   E +    ++E+ +R +L
Sbjct:   39 FLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMESTKRRQL 100
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BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Match: A0A482S9C6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9C6_9ARCH)

HSP 1 Score: 54.7 bits (130), Expect = 4.250e-6
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:   30 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEA 212
            MSS+     + + VP  FV+GAGMELFM+ TGFY +  RKEAERR +   + + R+AR+ A
Sbjct:    1 MSSNIIFQDLKRIVPICFVLGAGMELFMIKTGFYTIVTRKEAERRLDLWRQEEGRKARLRA 61
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BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Match: A0A6G0WTV1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTV1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.420e-6
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:   30 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEE 182
            M+ +     +++ VPA FVVGAGMELFM+ TGFYD+  + EAE RA+ + E
Sbjct:    1 MAQASLRPFLVKLVPACFVVGAGMELFMVKTGFYDIVTKNEAEIRAQKKAE 51
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BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Match: A0A485L2A5_9STRA (Aste57867_14693 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2A5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.870e-5
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:   57 MLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAE 170
            +++ VPA FVVGAGMELFM+ TGFYD+  + EAE RA+
Sbjct:   12 LIKLVPACFVVGAGMELFMVKTGFYDIVTKNEAEIRAQ 49
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BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Match: A0A1V9ZUD2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUD2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.930e-5
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:   39 SKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAE----RRAEAEE 179
            +  A ++ + VPA FV+GAGME+FM+ TGFYD+  + EAE    +RAE EE
Sbjct:    8 ASIAPLLRKLVPACFVIGAGMEVFMVKTGFYDIVTKNEAEIRAIKRAEREE 58
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1475.2772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FKY9_ECTSI5.210e-3896.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U0Z4_9STRA4.260e-956.45Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
K8Z8J1_NANGC5.670e-956.45Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A482S9C6_9ARCH4.250e-649.18Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0WTV1_9STRA8.420e-650.98Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L2A5_9STRA2.870e-563.16Aste57867_14693 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZUD2_9STRA7.930e-550.98Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1475contigE-siliculosus-1a_F_contig1475:10711..14110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size255
Model size1301
Exons3
Ec32 orthologEc-21_002320.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1475.2772.1prot_E-siliculosus-1a_F_contig1475.2772.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1475 11728..14081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.9240909-UTR-E-siliculosus-1a_F_contig1475:10710..117271622927984.9240909-UTR-E-siliculosus-1a_F_contig1475:10710..11727Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1475 10711..11727 -
1696318763.1960495-UTR-E-siliculosus-1a_F_contig1475:10710..117271696318763.1960495-UTR-E-siliculosus-1a_F_contig1475:10710..11727Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1475 10711..11727 -
1622927984.9696069-UTR-E-siliculosus-1a_F_contig1475:14081..141101622927984.9696069-UTR-E-siliculosus-1a_F_contig1475:14081..14110Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1475 14082..14110 -
1696318763.241954-UTR-E-siliculosus-1a_F_contig1475:14081..141101696318763.241954-UTR-E-siliculosus-1a_F_contig1475:14081..14110Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1475 14082..14110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.9356015-CDS-E-siliculosus-1a_F_contig1475:11727..118231622927984.9356015-CDS-E-siliculosus-1a_F_contig1475:11727..11823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1475 11728..11823 -
1696318763.2080822-CDS-E-siliculosus-1a_F_contig1475:11727..118231696318763.2080822-CDS-E-siliculosus-1a_F_contig1475:11727..11823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1475 11728..11823 -
1622927984.947476-CDS-E-siliculosus-1a_F_contig1475:12585..126511622927984.947476-CDS-E-siliculosus-1a_F_contig1475:12585..12651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1475 12586..12651 -
1696318763.2253013-CDS-E-siliculosus-1a_F_contig1475:12585..126511696318763.2253013-CDS-E-siliculosus-1a_F_contig1475:12585..12651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1475 12586..12651 -
1622927984.959271-CDS-E-siliculosus-1a_F_contig1475:13988..140811622927984.959271-CDS-E-siliculosus-1a_F_contig1475:13988..14081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1475 13989..14081 -
1696318763.233955-CDS-E-siliculosus-1a_F_contig1475:13988..140811696318763.233955-CDS-E-siliculosus-1a_F_contig1475:13988..14081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1475 13989..14081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1475.2772.1

>prot_E-siliculosus-1a_F_contig1475.2772.1 ID=prot_E-siliculosus-1a_F_contig1475.2772.1|Name=mRNA_E-siliculosus-1a_F_contig1475.2772.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=85bp
MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEE
EYQARRARIEARRRARLSNGNNGSSPSGGDGRGE*
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mRNA from alignment at E-siliculosus-1a_F_contig1475:10711..14110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1475.2772.1 ID=mRNA_E-siliculosus-1a_F_contig1475.2772.1|Name=mRNA_E-siliculosus-1a_F_contig1475.2772.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3400bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1475:10711..14110- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACAGCGTAGTGTTGCGCTGCGAACGACAATGAGCAGCAGCAAGTTCGCC
ACCGTCATGCTGCAGTTTGTGCCGGCGTCTTTCGTTGTCGGAGCCGGCAT
GGAGCTGTTCATGCTCAACACGGTGAGTGTTAAAGAAGCCTGAAGCCTCT
GGCAATCTCGCCGCATTTATTCTCGTTGACACTGCCTCCTGCCTGTCAGC
AGATCCGCGTAGGCGCGACAGCAACAGCACCGAGCTATAGCAGTGCTTCG
CCTCCCGCTAGACTCCAGCTGCAGTCACCGAGTGTAGGGCACGTGCAATG
AAGGATTTTTTTATCAAATTCTGCTGAAGTGATGCGTGTTCAAACTGGCT
GTTGTGCAGCAGTTCCCACGTGCTGACTCGATCGATTGATCAAGCGATCT
GCATGTCCAACCGACGACATTGCGCAACAGCAGCAAAGTATGTGTTCGTC
GCCAGGGCTATCCCCGGCGATGCAGCAAGACTTTCCCTTGGGGTGTTATA
CCGTGCAACTCACGTCAACAACGGTGTGCAATCCATCGATGCCGAGATGT
TGCTTTTTTCTGACTACCGATAGACTCTACAATACTCATTGCTGTTGCCG
TACAAATGCGATCCTGTCTGTGCAGTCACGAGGGGCATCACAACCCCTCA
TGTTATTGAAACTCGGGTGAAAACGTACCGACGCAATAGCCACCTGTGGG
CCCCCGGCTGACCCGCTGATGCACCCAGAAAACACGCCGAAAGGAAAGGC
ATACAACATCATGTCCAGAATGTATGGGATCTCACACACAAGCAAACTTT
GTGGTATCTCATATTTGAATACGAACGACGTGTTTTCATTGGTAAGCCGG
TTAGCGCGGTCCGTGCCAGCTATTATTTCATGAAACACACACACGTCCCT
TTCTACCTTATGGACGCAAGTCTGCACCAGCCGGGGTCGCATAGGGGGAA
GATGAACACAGGTTTCTTGGCCTTCCCTCTTTTGTCCTCTGTAGGCACGT
GACACGCGCCTATCGCGTTTTCATTCGTGGTCGATGTTTTCTCCAGGAAA
CACACGTAGAGTACATAGCACTCATGAAGAATCATTCACGTGGGCGTAGC
ATACGGTTCGCCTCGTCGAATGGAAGGGGCAGTCTGTTGCTGGCAGCCTG
TTCAGGGTGTCAGTCCGGTTTAGGTGTACGTGCTGCAGTTTTCTTTGGAC
GTAAATAGCAGCTTCACCCGCCGGCGGCGCGGCCCTCTCTTGTTCGCGAG
CTTCCCACCCAGAAGCTCACATTTCGCGCTGCCCTTGAATGCCGCACACG
AGCCGTGGGACGCGATTAATTATTGGAGTGCTGCTGAAAAAAGCTGCTGC
TCCTCATCTGCTAGTTTTTTCTGCGCAAGTTTTAAACATACTCCCACTAT
TGTCGGTTGTTGTTAATGCTGCTGCTGCTGCTTCTGTCCTTGCCTGCATC
TGTGTGTAGGGCTTTTATGACGTGGCGTTGAGAAAAGAGGCGGAGAGACG
GGCGGAAGCAGAGGAGGAATACCAGGTCTGTGTCTGTGTGTGTGTGAGAG
AGAGACAGAACCTCACTTGAGACACGCGTTCCATCGGCACAATTTTGCCT
CGAGTGGGTTCTTTTCGACGGGGTTTTGGTCGAATCGTCGTGGCGAAATG
TTTGATATGCGCAGCGCATGCGAGCGCAAGAGCACCAGCGTTATCACGCT
CGCTCAAGGCGGACCCGATTGTCCGTCCGAAACCTAAAACGGTACTGCTA
CCTATCCCGAAATTTACGATCGGTGACTGTAAAGAAAACGACCTGATAGT
AGGACGAGCGCATTACGTACCAAGGCAACTAACTGCCCATGTTCTTGCTA
GCCATCTTTTCCGAAATTATTAAGTACAAGGGGGCGGTCACGCCAGGACG
TCTATAATAGCATGTATTCACCACCAACCTTTCCGGTGCTCTTTTTTTTT
TTTCGGGACGGCCGTTATGTTGCTCTGCTCCTTGATGGTGGTGGTGGTCT
TGTTGTTCGTCGCCGTCGCCATCATCCACGCCTCGAAGGTTTGGTGCGGC
AGAGTCACGCCAGGGTGTCTACCCAGTGTCTAGCATGATTCACCACCATC
CTTCCCGGTGCTCCATTTTTTCAGGACGACCTTTGTGTTTCTCTGTATTT
TGGTTGTTCGTTGTGGCCATCGCGTTCATCCAAGCTGTCATCGGTTTTAG
ACTTGGTTGCGGCGGTGACTGACCATTTTTTTTTTTGTTGTGTGTGTTTT
CGAACGATGTAACGGGGTTTTTCCTCTGGCGATGCAGGCGAGACGAGCTA
GGATAGAGGCGCGGAGACGAGCGAGACTCAGCAACGGCAACAACGGAAGC
AGTCCAAGCGGAGGGGACGGGCGTGGCGAATGATGCGCCGCGGTCTCACC
CCCCGCCCCCGGGTAGTGGGCGCGATTCCGACACCATCAACAAAGACAAC
CTCAATAACGGGAGTACGCCGGCAGGCGTGTCGCAGCGCGCGGGATTTTT
TTTGGAAACCGGCGATTTTGCGCGATTGATTCGAGGAGGGCGTGATCACC
TTATGGGCCGGTGACCTCTCCCTTGCTTCCTTCCCTTTGTTTGGCTGAAA
AAAAAAAAAGAGGCGTTTTGCATTTAGAGGCAGTTGGCGCGTCTGTTTGA
AGGAGGTGCAATTCTTCACGATATCGGTCGGTGATCTCCCTTTTGCAGCA
TTCCCGTCGTCGGCCGAGAGAAGTAAGTGGTTGTGTGTCTGGAGATATTT
TTTCGAGGTTGTTTCAAGAAGGGGTGTTCAAGGTGTCGTTTCTGTGATCT
GATCTCCCTCCCTTCCTCCCTTCTCGTGATTGGGAGAGAGGATGCTGGCG
TGTGTGTGTTTGAGGAAAATTGTTGCGAGGTTGGTTCGATTAGGTGTCTT
CAAGTTACCGGTCGGTGATCTCCCGCTGCTTCCTTGGCGTGTTGTTGGGT
ATAGAGAAGCGACAGTGATCCCTCGCTTCCCAGGTGCAGCGCAACTAAGG
CGAGCGAGACCCGCACTGTAAATAATACAATGGACGCGACTAGACCAAGG
TCCGCGGCTACGCGGTCATGTTTTGTTTTTTTTAACTGCACTTTGGAAAA
ATCAACGGCGCAGCCGTCTCGATGTTTTATTTTTGGTAGTCCTCCTGATT
CCCGTCTCTCTTTGCTGCTTTAGGAGTTCGTTGTGGCTCGGTGGGCAACG
AGCTTGCCTGTTTTACCCCGAATCAGTGAAAGTGGACTTCATCAGCGGGA
TACCTGCGCATTCATCGTGTTAGACCGCGCGACGGTGCTCTTGGTAGAGC
TGCCTCATCCTGTCCTTCATCGAGGCCCAAACTGGAGCCTTTTGCATATA
TGGCTCATGTTTCTGGGGGCCGGCGCAGGTTTCCATGCAGGCAAAGCGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1475:10711..14110-

>mRNA_E-siliculosus-1a_F_contig1475.2772.1 ID=mRNA_E-siliculosus-1a_F_contig1475.2772.1|Name=mRNA_E-siliculosus-1a_F_contig1475.2772.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1475:10711..14110- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCAGCAGCAAGTTCGCCACCGTCATGCTGCAGTTTGTGCCGGCGTC
TTTCGTTGTCGGAGCCGGCATGGAGCTGTTCATGCTCAACACGATGAGCA
GCAGCAAGTTCGCCACCGTCATGCTGCAGTTTGTGCCGGCGTCTTTCGTT
GTCGGAGCCGGCATGGAGCTGTTCATGCTCAACACGGGCTTTTATGACGT
GGCGTTGAGAAAAGAGGCGGAGAGACGGGCGGAAGCAGAGGAGGAATACC
AGGGCTTTTATGACGTGGCGTTGAGAAAAGAGGCGGAGAGACGGGCGGAA
GCAGAGGAGGAATACCAGGCGAGACGAGCTAGGATAGAGGCGCGGAGACG
AGCGAGACTCAGCAACGGCAACAACGGAAGCAGTCCAAGCGGAGGGGACG
GGCGTGGCGAATGAGCGAGACGAGCTAGGATAGAGGCGCGGAGACGAGCG
AGACTCAGCAACGGCAACAACGGAAGCAGTCCAAGCGGAGGGGACGGGCG
TGGCGAATGA
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