mRNA_E-siliculosus-1a_F_contig14748.2770.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14748.2770.1
Unique NamemRNA_E-siliculosus-1a_F_contig14748.2770.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14748.2770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14748contigE-siliculosus-1a_F_contig14748:2..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size270
Model size503
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14748.2770.1prot_E-siliculosus-1a_F_contig14748.2770.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14748 102..416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.5935605-UTR-E-siliculosus-1a_F_contig14748:1..1011622927984.5935605-UTR-E-siliculosus-1a_F_contig14748:1..101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14748 2..101 +
1696318763.0852327-UTR-E-siliculosus-1a_F_contig14748:1..1011696318763.0852327-UTR-E-siliculosus-1a_F_contig14748:1..101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14748 2..101 +
1622927984.6696062-UTR-E-siliculosus-1a_F_contig14748:416..5491622927984.6696062-UTR-E-siliculosus-1a_F_contig14748:416..549Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14748 417..549 +
1696318763.115209-UTR-E-siliculosus-1a_F_contig14748:416..5491696318763.115209-UTR-E-siliculosus-1a_F_contig14748:416..549Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14748 417..549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.618437-CDS-E-siliculosus-1a_F_contig14748:101..2461622927984.618437-CDS-E-siliculosus-1a_F_contig14748:101..246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14748 102..246 +
1696318763.0952904-CDS-E-siliculosus-1a_F_contig14748:101..2461696318763.0952904-CDS-E-siliculosus-1a_F_contig14748:101..246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14748 102..246 +
1622927984.6367164-CDS-E-siliculosus-1a_F_contig14748:291..4161622927984.6367164-CDS-E-siliculosus-1a_F_contig14748:291..416Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14748 292..416 +
1696318763.1053252-CDS-E-siliculosus-1a_F_contig14748:291..4161696318763.1053252-CDS-E-siliculosus-1a_F_contig14748:291..416Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14748 292..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14748.2770.1

>prot_E-siliculosus-1a_F_contig14748.2770.1 ID=prot_E-siliculosus-1a_F_contig14748.2770.1|Name=mRNA_E-siliculosus-1a_F_contig14748.2770.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=90bp
MPGLVASEKGHSEKGEGSPTPLTLLGNVGVVWLVVNIITPPVIVLYFRAA
VSTDRQVLLFRRSLGTNQEILPVITPGGGYDSVGTNTYT*
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mRNA from alignment at E-siliculosus-1a_F_contig14748:2..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14748.2770.1 ID=mRNA_E-siliculosus-1a_F_contig14748.2770.1|Name=mRNA_E-siliculosus-1a_F_contig14748.2770.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=548bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14748:2..549+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGGGAGGGGGGACGGCGGCGCGAAGCATGTAGTAAAAGGGTGCCACG
CGGGCGAGTTCGACGGGAGGACGAAAGGAGGGAAGTCGTCGTGTTTATCC
ATGCCGGGTTTGGTTGCTTCTGAAAAAGGTCACAGCGAAAAGGGAGAGGG
GTCCCCAACCCCTCTCACTCTTTTGGGCAATGTTGGCGTGGTTTGGTTGG
TGGTAAATATCATCACACCACCGGTGATCGTGCTGTATTTTCGGGGCGGG
GGGGGGGTGTCCAATGGGCTATTGAGCGATAAGTCTCGAGCCGCAGTAAG
CACCGACAGGCAGGTGCTGCTCTTCCGCCGCTCGCTCGGAACGAACCAAG
AAATATTGCCTGTTATCACACCAGGGGGGGGATATGATAGCGTTGGTACT
AACACGTACACGTGAACATAATTCGACCCACTGCTGCTGCGGTGTCGTGT
TTGGCGCACCCTGTGTTACCCACTCCGGTTGTACGTTGCGCAGGCCGCAC
GTGTTTGCGTTCGTGCTGATTTGTCGATGGGGCTTGGGGATTTGGGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14748:2..549+

>mRNA_E-siliculosus-1a_F_contig14748.2770.1 ID=mRNA_E-siliculosus-1a_F_contig14748.2770.1|Name=mRNA_E-siliculosus-1a_F_contig14748.2770.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14748:2..549+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGGGTTTGGTTGCTTCTGAAAAAGGTCACAGCGAAAAGGGAGAGGG
GTCCCCAACCCCTCTCACTCTTTTGGGCAATGTTGGCGTGGTTTGGTTGG
TGGTAAATATCATCACACCACCGGTGATCGTGCTGTATTTTCGGGATGCC
GGGTTTGGTTGCTTCTGAAAAAGGTCACAGCGAAAAGGGAGAGGGGTCCC
CAACCCCTCTCACTCTTTTGGGCAATGTTGGCGTGGTTTGGTTGGTGGTA
AATATCATCACACCACCGGTGATCGTGCTGTATTTTCGGGCCGCAGTAAG
CACCGACAGGCAGGTGCTGCTCTTCCGCCGCTCGCTCGGAACGAACCAAG
AAATATTGCCTGTTATCACACCAGGGGGGGGATATGATAGCGTTGGTACT
AACACGTACACGTGACCGCAGTAAGCACCGACAGGCAGGTGCTGCTCTTC
CGCCGCTCGCTCGGAACGAACCAAGAAATATTGCCTGTTATCACACCAGG
GGGGGGATATGATAGCGTTGGTACTAACACGTACACGTGA
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