mRNA_E-siliculosus-1a_F_contig1473.2765.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1473.2765.1
Unique NamemRNA_E-siliculosus-1a_F_contig1473.2765.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1473.2765.1 vs. uniprot
Match: D7FIG1_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG1_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 1.850e-124
Identity = 190/194 (97.94%), Postives = 191/194 (98.45%), Query Frame = 1 
Query:    1 MLYLTLDDDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPLEPDLDGDKPVEDFLEYAKTPHLELLHDGGGDVAATTRGGGRKDGRAELLVIGRQDWISTLQTCR 582
            MLYLTL+DDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFG PLEPDLDGDKPVEDFLEYAKTPHLELLHD GGDVA TTRGGGRKDGRAELLVIGRQDWISTLQTCR
Sbjct:    1 MLYLTLEDDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGQPLEPDLDGDKPVEDFLEYAKTPHLELLHDSGGDVATTTRGGGRKDGRAELLVIGRQDWISTLQTCR 194
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BLAST of mRNA_E-siliculosus-1a_F_contig1473.2765.1 vs. uniprot
Match: A0A6H5L5Z7_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z7_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 7.760e-104
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 1 
Query:   94 DGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPLEPDLDGDKPVEDFLEYAKTPHLELLHDGGGDVAATTRGGGRKDGRAELLVIGRQDWISTLQTCRH 585
            DGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHE VRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPL+PDLDGDKPVEDFLEYAKTPHLEL HDGGGDVAA TRGGGRKDGRAELLVIGRQDW+STL+TCRH
Sbjct:   17 DGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHEFVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPLDPDLDGDKPVEDFLEYAKTPHLELPHDGGGDVAAKTRGGGRKDGRAELLVIGRQDWVSTLRTCRH 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1473.2765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIG1_ECTSI1.850e-12497.94Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5L5Z7_9PHAE7.760e-10496.34Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1473contigE-siliculosus-1a_F_contig1473:8764..11072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size585
Model size585
Exons4
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1473.2765.1prot_E-siliculosus-1a_F_contig1473.2765.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1473 8764..11072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.5930214-CDS-E-siliculosus-1a_F_contig1473:8763..90031622927983.5930214-CDS-E-siliculosus-1a_F_contig1473:8763..9003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 8764..9003 -
1696318762.6608515-CDS-E-siliculosus-1a_F_contig1473:8763..90031696318762.6608515-CDS-E-siliculosus-1a_F_contig1473:8763..9003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 8764..9003 -
1622927983.604307-CDS-E-siliculosus-1a_F_contig1473:9381..95041622927983.604307-CDS-E-siliculosus-1a_F_contig1473:9381..9504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 9382..9504 -
1696318762.6750948-CDS-E-siliculosus-1a_F_contig1473:9381..95041696318762.6750948-CDS-E-siliculosus-1a_F_contig1473:9381..9504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 9382..9504 -
1622927983.6230938-CDS-E-siliculosus-1a_F_contig1473:9974..101271622927983.6230938-CDS-E-siliculosus-1a_F_contig1473:9974..10127Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 9975..10127 -
1696318762.687268-CDS-E-siliculosus-1a_F_contig1473:9974..101271696318762.687268-CDS-E-siliculosus-1a_F_contig1473:9974..10127Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 9975..10127 -
1622927983.635453-CDS-E-siliculosus-1a_F_contig1473:11003..110721622927983.635453-CDS-E-siliculosus-1a_F_contig1473:11003..11072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 11004..11072 -
1696318762.6987948-CDS-E-siliculosus-1a_F_contig1473:11003..110721696318762.6987948-CDS-E-siliculosus-1a_F_contig1473:11003..11072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1473 11004..11072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1473.2765.1

>prot_E-siliculosus-1a_F_contig1473.2765.1 ID=prot_E-siliculosus-1a_F_contig1473.2765.1|Name=mRNA_E-siliculosus-1a_F_contig1473.2765.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=195bp
MLYLTLDDDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALER
LGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRG
TVLLTNNVLDREGAEGVRVLGAGQEFGHPLEPDLDGDKPVEDFLEYAKTP
HLELLHDGGGDVAATTRGGGRKDGRAELLVIGRQDWISTLQTCRH
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mRNA from alignment at E-siliculosus-1a_F_contig1473:8764..11072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1473.2765.1 ID=mRNA_E-siliculosus-1a_F_contig1473.2765.1|Name=mRNA_E-siliculosus-1a_F_contig1473.2765.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2309bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1473:8764..11072- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCTACCTCACGCTCGACGACGACCCTTTTCCGGACCAAGAATACGA
TGAGGAGGCTCTCCTGGAGGTGTGTTTCACGGCCAACAACGCTGCACATC
AAAGAACATGCCTGCACGTTAGACAGGCTAACCCACCAGCCTGGTGGTCT
AGACTACAGCAGTGCCGCTCGCCCATAGACCATAGACCATAGACCATAGA
CTAAGAAACATCGCAAGACGGTCAAGGCTTACAGCACATGCATGGTCACG
TATGGGGGCTCGGCAATAATAGCTTGTGTTCAATCGTCGAGACATGAAGG
CTGTGAGCGTTTCTCCAATACTGTTGGGATTTCTGAGCGGGTCGGTCCTG
CTGAATTGAGTTCGTCCGTTTATGCGCATCAAGTATGTGTGGCTTCGAGT
CTCCCTAGCCACTTAGCAGTGGATTTTGTCCATGTAAGTAGACTTTCTTC
AGAGGTCAAGTTGCTGGTGGAGAGAGACAACAGAAGCAGTCGCGGTGTCC
GTTGGGTCATTTAATGGTCGGGAGGACTGGACCCCTCGGAGATCACTGCT
GACTCCGAGACGGATTCATGGACCCCAAAGCGTACATCATCTCCTGTGTC
AGATGAGCTGACCCTGCTAGACTATGCTAGACAACAGACTGCCCAGTCAA
CCCCAGACTGGGTAGTCTACAGTCTACGAAGCGCCAGTGGGCTTTCAAAC
TGATCAACAAGGCGACGTGCCTATTGTTCGGCTCCGTCCTTTCACCCCTG
TGAGGGATAACAGTATTGTACTGCACTGAAGGACCTCCCGCCTGGGGCGC
CGGGGAAACGTAGCGGGCTTGACCCCGCTGCAGGTTTTGGGTTGTCCAAG
ACGAGTATGTATATATATATACACGATGCGCAAATACAAGTAGTCACTGC
AACATTTTTTACATTGCTGATGCTATTCCGCAAACACACAACAAGTTGGT
GCGGTCGGTGGCAAGAAGGGACGGGGATGACCGAACGGTTAGTGAGCTCA
TCAGATTTCAGGATGCTTTGGAACGGCTGGGACTCCTTTGGACACCATTG
GATTCCCTCGACAAACATCAGGCCCACGAACTCGTGCGGAACCTTCACGT
GAGTCGTGAGTAACATCCACAACCAAATGCGCCAAGAACAACGAGGTTAT
CACGGGTGTAAGGGACCGGCCATTTGTATTGGAAATCGTTCCATCTCATC
CTATATCGAGCGGTGAGTCTCTTTTTTTCATGGAGATTATTTGGCAATGA
CCATCGATCGTAAGCTTTAGTCTTGCTTCATGGTTGTCGGTGAAATGGAC
CAATCTGCCTGCCGTAGGGCATTCATTTCCTTGAGACGACTGCAGCAGAC
ATTCAATTTCCGAGTAGAAGGTCTGCCCGAACCCACATGATGCCTATGGA
CGTCGACCTTGGAGTGGTCCAAACTATAAAAGGTACTCTAATGGGCGTTC
TACAAGTCTATTTATAGCGTTTCTTGTATTGAAATGGCTACAGTCGTGCT
GGAGTGAAGAGATTGAAACGCTCAAAGTTGAAAACATGCTCGCGCGATGG
TACCCCGATGACACACAGCTGGAACTGACTGCGCCGGGAGACATGGTGTA
CCTCAAGCACTCGCCAGCGATGAGGTCGTACGTCGTGTTGAGGGGGACAG
TTCTGCTCACTAACAACGTGCTTGATAGAGAAGGGGCGGAGGTGAGAGAC
TCACAACAAAGGATAAAGGAAAATTGTCTGCTAATCCACCTTTTGCTATG
AGCCAGCCTCTCCGGCAACGACGGGGTACGGGTGTTGTCAGTGAGGTCGT
GACGGTGCACGAGCGCATCGAAAGCAGCTGAGACACACAGGACACTTTGC
CCCTGCCTTACCTGCCTGGCACGTGCTCTTGATAAAAGCTCGGTTGGACT
GCCTCGGACAACAAGTAAAAGCCAAGGCAACACGAAACTATTTGCCGCCA
TTTCGAGTTTTTTGGGCCGGCTGCAGCACGTCTGCGGAGCATCATACCGG
TATCATCTCCAGTATTGGGTGTCACTACTGGAAGCAAACGTTTTTCACCC
GCTCTCGCTGTCCCCAAAGGGTGTGCGTGTGCTGGGGGCGGGGCAGGAGT
TCGGCCACCCCCTGGAGCCAGACCTGGATGGTGACAAGCCTGTTGAGGAC
TTTCTTGAATATGCGAAGACTCCACACCTAGAGCTTCTACACGACGGCGG
CGGCGACGTTGCCGCTACGACCCGCGGTGGGGGCAGGAAGGATGGGAGAG
CCGAGCTTCTGGTCATCGGACGTCAGGACTGGATTTCAACACTCCAAACT
TGCAGGCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1473:8764..11072-

>mRNA_E-siliculosus-1a_F_contig1473.2765.1 ID=mRNA_E-siliculosus-1a_F_contig1473.2765.1|Name=mRNA_E-siliculosus-1a_F_contig1473.2765.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1473:8764..11072- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCTACCTCACGCTCGACGACGACCCTTTTCCGGACCAAGAATACGA
TGAGGAGGCTCTCCTGGAGATGCTCTACCTCACGCTCGACGACGACCCTT
TTCCGGACCAAGAATACGATGAGGAGGCTCTCCTGGAGTTGGTGCGGTCG
GTGGCAAGAAGGGACGGGGATGACCGAACGGTTAGTGAGCTCATCAGATT
TCAGGATGCTTTGGAACGGCTGGGACTCCTTTGGACACCATTGGATTCCC
TCGACAAACATCAGGCCCACGAACTCGTGCGGAACCTTCACTTGGTGCGG
TCGGTGGCAAGAAGGGACGGGGATGACCGAACGGTTAGTGAGCTCATCAG
ATTTCAGGATGCTTTGGAACGGCTGGGACTCCTTTGGACACCATTGGATT
CCCTCGACAAACATCAGGCCCACGAACTCGTGCGGAACCTTCACCTGGAA
CTGACTGCGCCGGGAGACATGGTGTACCTCAAGCACTCGCCAGCGATGAG
GTCGTACGTCGTGTTGAGGGGGACAGTTCTGCTCACTAACAACGTGCTTG
ATAGAGAAGGGGCGGAGCTGGAACTGACTGCGCCGGGAGACATGGTGTAC
CTCAAGCACTCGCCAGCGATGAGGTCGTACGTCGTGTTGAGGGGGACAGT
TCTGCTCACTAACAACGTGCTTGATAGAGAAGGGGCGGAGGGTGTGCGTG
TGCTGGGGGCGGGGCAGGAGTTCGGCCACCCCCTGGAGCCAGACCTGGAT
GGTGACAAGCCTGTTGAGGACTTTCTTGAATATGCGAAGACTCCACACCT
AGAGCTTCTACACGACGGCGGCGGCGACGTTGCCGCTACGACCCGCGGTG
GGGGCAGGAAGGATGGGAGAGCCGAGCTTCTGGTCATCGGACGTCAGGAC
TGGATTTCAACACTCCAAACTTGCAGGCACGGTGTGCGTGTGCTGGGGGC
GGGGCAGGAGTTCGGCCACCCCCTGGAGCCAGACCTGGATGGTGACAAGC
CTGTTGAGGACTTTCTTGAATATGCGAAGACTCCACACCTAGAGCTTCTA
CACGACGGCGGCGGCGACGTTGCCGCTACGACCCGCGGTGGGGGCAGGAA
GGATGGGAGAGCCGAGCTTCTGGTCATCGGACGTCAGGACTGGATTTCAA
CACTCCAAACTTGCAGGCAC
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