mRNA_E-siliculosus-1a_F_contig1472.2763.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1472.2763.1
Unique NamemRNA_E-siliculosus-1a_F_contig1472.2763.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: D8LG93_ECTSI (Calcium-dependent protein kinase 2 (PfCDPK2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG93_ECTSI)

HSP 1 Score: 544 bits (1402), Expect = 2.610e-179
Identity = 302/325 (92.92%), Postives = 309/325 (95.08%), Query Frame = 2 
Query:  494 QMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQLDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASMPHLNVNSSSIRHLERTVQDARKQKQAALQQFGTSGPTPEESIDDMDTSLEEXXXXXXXXXXXXXXXXYNRREAVMQASLLRCASDLIEKGPFRRATLEVSDPAAQKALREAAVYGGAPPPPSRGPSGPDPLARRSSEETAGSAGATQMAVDGWRSMPPQVEEEPHPWGRGEHMVTAATAVQKLVQ 1468
            +MDKDGSGTISLEEFD+VLSSQANLSKADIRAIFASVD            LAATLERRQLDEMRL+LAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASMPHLNVNSSSIRHLERTVQDARKQKQAALQQFGT+GPTPEESIDDMDTSL+EXXXXXXXXXXXXX   YNRREAVMQASLLRCASDLIEKGPFRRATLEVSDPAAQKALR+AAVYGGAPPPPSRGPSGPDPLARR SEETAGSAGATQMAVDGW+SMPPQVEEEPHPWGRGEHMVTAATAVQKLVQ
Sbjct:  394 KMDKDGSGTISLEEFDNVLSSQANLSKADIRAIFASVDXXXXXXXXXXXXLAATLERRQLDEMRLKLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASMPHLNVNSSSIRHLERTVQDARKQKQAALQQFGTNGPTPEESIDDMDTSLDEXXXXXXXXXXXXX---YNRREAVMQASLLRCASDLIEKGPFRRATLEVSDPAAQKALRDAAVYGGAPPPPSRGPSGPDPLARRLSEETAGSAGATQMAVDGWKSMPPQVEEEPHPWGRGEHMVTAATAVQKLVQ 715
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A6H5JLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX9_9PHAE)

HSP 1 Score: 525 bits (1353), Expect = 1.680e-177
Identity = 294/329 (89.36%), Postives = 311/329 (94.53%), Query Frame = 2 
Query:  482 ASRRQMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQLDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASMPHLNVNSSSIRHLERTVQDARKQKQAALQQFGTSGPTPEESIDDMDTSLEEXXXXXXXXXXXXXXXXYNRREAVMQASLLRCASDLIEKGPFRRATLEVSDPAAQKALREAAVYGGAPPPPSRGPSGPDPLARRSSEETAGSAGATQMAVDGWRSMPPQVEEEPHPWGRGEHMVTAATAVQKLVQ 1468
            ++ ++MDKDGSGTISLEEFD+VLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQLDEMRL+LAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASMPHLNVNSSSIR LERTVQDARKQKQAA QQFGTSGPTPEES+DDM TSLE XXXXXXXXXXXXXXXXYNRREAVM+ASLLRCASDLI+ GPFRRATLE+SDPAA+KALR+AA  G AP   ++GPSGPDPLA R SEETAGSAGATQ  VDGW+SMPPQ EEEPHPWG G+HMVTAATAVQKL+Q
Sbjct:   15 STTKRMDKDGSGTISLEEFDNVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQLDEMRLKLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASMPHLNVNSSSIRQLERTVQDARKQKQAARQQFGTSGPTPEESMDDMGTSLEXXXXXXXXXXXXXXXXXYNRREAVMRASLLRCASDLIQTGPFRRATLEISDPAAKKALRDAAACG-APHLTAQGPSGPDPLAWRPSEETAGSAGATQRVVDGWKSMPPQEEEEPHPWGSGDHMVTAATAVQKLMQ 342
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A835ZF12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF12_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.230e-15
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 2 
Query:  584 RAIFASVDVDNGNELNFNEFLAATLERRQLDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPG-LRLATYRSASM 913
            +AIF  V +D    L+FN+F+AA++ RR LD+  LRLAFDRLD+DHSG I   DL   VG+   +  +    KE+D + DG I+F EF  AMR+ +  G L LAT R+  +
Sbjct: 1770 QAIFDGVVMDGSRTLSFNDFMAASMSRRMLDDRSLRLAFDRLDYDHSGAISVDDLELTVGAGADEVTLKAAIKEWDTDGDGAINFQEFCAAMRQKEDVGILDLATMRNRKL 1880
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A2C6KT39_9APIC (Calcium-dependent protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KT39_9APIC)

HSP 1 Score: 85.5 bits (210), Expect = 1.340e-13
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 2 
Query:  491 RQMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQ-LDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAP----GLRLA 892
            R++D D SG I +     VL +  ++ + +   IF  +D     E+N++EFLAATL+ R  L++  +R AFDR D D+SG I   +LR ++G        ++I ++ D  ++G IDF EF LA+   +AP     LRLA
Sbjct:  263 RKIDVDNSGCIKMNRLVEVLVTFLDIPREEALRIFQRIDQSGAEEINYSEFLAATLQTRMALNDQLIREAFDRFDVDNSGHISLDNLRYVLGDSYDSIPAEDILRQCDRKQNGVIDFDEFMLALTTDEAPEGSSSLRLA 401
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A0G4EWG0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EWG0_VITBC)

HSP 1 Score: 85.1 bits (209), Expect = 3.030e-13
Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = 2 
Query:  491 RQMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERR-QLDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKAD 871
            +++DKDG+GTI+L E   VL  +  + +A+ + IF ++D    +EL++ EFLAATL+ +  L E  +R AF + D DH+G I   +LR ++G       I+EI K  D    G I++ EF  A+   D
Sbjct:  469 KKLDKDGNGTITLNELQDVLMHRLAIPEAEAQRIFQAMDQSGDHELHYCEFLAATLQAKFVLQEHVIREAFQKFDVDHTGYISVDNLRTVLGETYNGTKIEEIIKGCDFRGTGVIEYDEFLTALTSDD 596
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A2A9M163_9APIC (Calcium-dependent protein kinase CDPK4 n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M163_9APIC)

HSP 1 Score: 85.1 bits (209), Expect = 4.770e-13
Identity = 51/168 (30.36%), Postives = 89/168 (52.98%), Query Frame = 2 
Query:  491 RQMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQ-LDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASMPHLNVNSSSIRHLERTVQDARKQKQA 991
            R++D D SG I ++    VL +  ++ + +   IF  +D     E+N++EFLAATL+ R  L++  +R AF+R D D+SG I   +LR ++G       ++EI ++ D  ++G I+F EF LA+   DA  L     +  +     + +   RH+       + ++QA
Sbjct: 1035 RKIDVDNSGCIKMDRMVAVLVTFLDIPRDEALRIFRRIDQTGAEEINYSEFLAATLQTRMALNQQLIREAFERFDVDNSGHISLDNLRYVLGDSYDSVSVEEILRQCDRKQNGVIEFDEFMLALTGDDAEVLERGNAKELAAQGEALTAQVSRHMSELADAVQARQQA 1202
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A086JIY7_TOXGO (Calcium-dependent protein kinase CDPK4 n=2 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A086JIY7_TOXGO)

HSP 1 Score: 79.7 bits (195), Expect = 1.850e-12
Identity = 44/124 (35.48%), Postives = 74/124 (59.68%), Query Frame = 2 
Query:  491 RQMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERR-QLDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAM 859
            R++D D SG I ++    VL +  ++ + +   IF  +D     E+N++EFLAATL+ R  L++  +R AF+R D D+SG I   +LR ++G       ++EI ++ D  ++G I+F EF LA+
Sbjct:   94 RKIDIDNSGCIKMDRMVAVLVTFLDVPRDEALRIFQRIDQTRAEEINYSEFLAATLQTRIALNQQLIREAFERFDVDNSGHISLENLRYVLGDSYDSLSVEEILRQCDRKQNGVIEFDEFMLAL 217
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: F0V9Y6_NEOCL (Putative CAM kinase, CDPK family n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0V9Y6_NEOCL)

HSP 1 Score: 81.6 bits (200), Expect = 5.350e-12
Identity = 46/129 (35.66%), Postives = 76/129 (58.91%), Query Frame = 2 
Query:  491 RQMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERR-QLDEMRLRLAFDRLDFDHSGTIDATDLRNIVGSDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADA 874
            R++D D SG I ++    VL +  ++ + +   IF  +D     E+N++EFLAATL+ R  L++  +R AF+R D D+SG I   +LR ++G       ++EI ++ D  ++G IDF EF LA+   +A
Sbjct:  994 RKIDIDNSGCIKMDRMVAVLVTFLDVPRDEALRIFRRIDQTGAEEINYSEFLAATLQTRIALNQQLIREAFERFDVDNSGHISLDNLRYVLGDSYDSLSVEEILRQCDRKQNGVIDFDEFMLALTGDEA 1122
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A7J6LWV6_PEROL (Uncharacterized protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LWV6_PEROL)

HSP 1 Score: 80.5 bits (197), Expect = 8.330e-12
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2 
Query:  479 YASRRQMDKDGSGTISLEEFDHVLS-SQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQLDEMRL-RLAFDRLDFDHSGTIDATDLRNIVG----SDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKAD 871
            Y +   +D  GSGTI+L EF   +  ++  + +A I  +FA +D D  +E+++ EFLAA + +     + L + AF  LD    G I + +LR I+G     DL +E + E+ +EFD N DG IDF EF   M+  D
Sbjct:  519 YRTFEALDVTGSGTITLPEFRSAMKKARPEMGEAKIDELFAGIDTDASDEIDYTEFLAAAISQVTFSRIDLCKKAFRILDRKQDGKISSDELRQIMGITQRDDLDEESVAEVIREFDTNGDGFIDFQEFLSMMQSYD 655
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BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Match: A0A1R2BYC9_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BYC9_9CILI)

HSP 1 Score: 79.3 bits (194), Expect = 1.140e-11
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 2 
Query:  491 RQMDKDGSGTISLEE----FDHVLSSQANLSKADIRAIFASVDVDNGNELNFNEFLAATLERRQL-DEMRLRLAFDRLDFDHSGTIDATDLRNIVGS--DLGQEGIDEIFKEFDLNKDGEIDFGEFKLAM 859
            R +D D SGT+S +E    F  +  ++ N    ++  I   VD+D   E+ ++EF++ATL R+QL  + RL +AF   D D SGTI A +L+ ++G   +  +E   ++  E DLN DG ID  EF   M
Sbjct:  334 RSLDTDNSGTLSAKELKEGFSILFGNEINDVDGEVEKIMKQVDLDGSGEIEYSEFVSATLNRQQLLSKERLEMAFKAFDLDQSGTITANELKQVLGKSHNYDEEMWTKLIAEADLNGDGVIDLTEFTKMM 463
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1472.2763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG93_ECTSI2.610e-17992.92Calcium-dependent protein kinase 2 (PfCDPK2) n=1 T... [more]
A0A6H5JLX9_9PHAE1.680e-17789.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZF12_9STRA9.230e-1545.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2C6KT39_9APIC1.340e-1336.69Calcium-dependent protein n=1 Tax=Cystoisospora su... [more]
A0A0G4EWG0_VITBC3.030e-1337.50Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A2A9M163_9APIC4.770e-1330.36Calcium-dependent protein kinase CDPK4 n=1 Tax=Bes... [more]
A0A086JIY7_TOXGO1.850e-1235.48Calcium-dependent protein kinase CDPK4 n=2 Tax=Tox... [more]
F0V9Y6_NEOCL5.350e-1235.66Putative CAM kinase, CDPK family n=2 Tax=Neospora ... [more]
A0A7J6LWV6_PEROL8.330e-1236.50Uncharacterized protein n=5 Tax=Perkinsus olseni T... [more]
A0A1R2BYC9_9CILI1.140e-1136.92Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1472contigE-siliculosus-1a_F_contig1472:251..5267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1008
Model size2719
Exons5
Ec32 orthologEc-17_004210.1
Ec32 ortholog descriptionCalcium-dependent protein kinase 2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.T
EC2.7.11.1
EggNOG OGsKOG0032@1,KOG0032@2759
EggNOG free text desc.protein serine/threonine kinase activity
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
KEGG Pathwayko04626,ko05145,map04626,map05145
KEGG koko:K13412
Seed eggNOG ortholog2880.D8LG93
Seed ortholog evalue5.7e-154
Seed ortholog score550.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.014426-UTR-E-siliculosus-1a_F_contig1472:250..7131622927983.014426-UTR-E-siliculosus-1a_F_contig1472:250..713Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1472 251..713 +
1696318762.4937131-UTR-E-siliculosus-1a_F_contig1472:250..7131696318762.4937131-UTR-E-siliculosus-1a_F_contig1472:250..713Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1472 251..713 +
1622927983.116579-UTR-E-siliculosus-1a_F_contig1472:4019..52671622927983.116579-UTR-E-siliculosus-1a_F_contig1472:4019..5267Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1472 4020..5267 +
1696318762.5444078-UTR-E-siliculosus-1a_F_contig1472:4019..52671696318762.5444078-UTR-E-siliculosus-1a_F_contig1472:4019..5267Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1472 4020..5267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.033713-CDS-E-siliculosus-1a_F_contig1472:713..8251622927983.033713-CDS-E-siliculosus-1a_F_contig1472:713..825Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 714..825 +
1696318762.5033023-CDS-E-siliculosus-1a_F_contig1472:713..8251696318762.5033023-CDS-E-siliculosus-1a_F_contig1472:713..825Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 714..825 +
1622927983.0552847-CDS-E-siliculosus-1a_F_contig1472:1598..17601622927983.0552847-CDS-E-siliculosus-1a_F_contig1472:1598..1760Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 1599..1760 +
1696318762.5116313-CDS-E-siliculosus-1a_F_contig1472:1598..17601696318762.5116313-CDS-E-siliculosus-1a_F_contig1472:1598..1760Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 1599..1760 +
1622927983.072304-CDS-E-siliculosus-1a_F_contig1472:2268..23711622927983.072304-CDS-E-siliculosus-1a_F_contig1472:2268..2371Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 2269..2371 +
1696318762.519177-CDS-E-siliculosus-1a_F_contig1472:2268..23711696318762.519177-CDS-E-siliculosus-1a_F_contig1472:2268..2371Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 2269..2371 +
1622927983.0877664-CDS-E-siliculosus-1a_F_contig1472:2646..27521622927983.0877664-CDS-E-siliculosus-1a_F_contig1472:2646..2752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 2647..2752 +
1696318762.5266716-CDS-E-siliculosus-1a_F_contig1472:2646..27521696318762.5266716-CDS-E-siliculosus-1a_F_contig1472:2646..2752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 2647..2752 +
1622927983.1027544-CDS-E-siliculosus-1a_F_contig1472:3494..40191622927983.1027544-CDS-E-siliculosus-1a_F_contig1472:3494..4019Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 3495..4019 +
1696318762.5343459-CDS-E-siliculosus-1a_F_contig1472:3494..40191696318762.5343459-CDS-E-siliculosus-1a_F_contig1472:3494..4019Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1472 3495..4019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1472.2763.1prot_E-siliculosus-1a_F_contig1472.2763.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1472 714..4019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1472.2763.1

>prot_E-siliculosus-1a_F_contig1472.2763.1 ID=prot_E-siliculosus-1a_F_contig1472.2763.1|Name=mRNA_E-siliculosus-1a_F_contig1472.2763.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=336bp
MMVLFYASRRQMDKDGSGTISLEEFDHVLSSQANLSKADIRAIFASVDVD
NGNELNFNEFLAATLERRQLDEMRLRLAFDRLDFDHSGTIDATDLRNIVG
SDLGQEGIDEIFKEFDLNKDGEIDFGEFKLAMRKADAPGLRLATYRSASM
PHLNVNSSSIRHLERTVQDARKQKQAALQQFGTSGPTPEESIDDMDTSLE
EEDEGDDDSSAGGAGGGYNRREAVMQASLLRCASDLIEKGPFRRATLEVS
DPAAQKALREAAVYGGAPPPPSRGPSGPDPLARRSSEETAGSAGATQMAV
DGWRSMPPQVEEEPHPWGRGEHMVTAATAVQKLVQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1472:251..5267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1472.2763.1 ID=mRNA_E-siliculosus-1a_F_contig1472.2763.1|Name=mRNA_E-siliculosus-1a_F_contig1472.2763.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5017bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1472:251..5267+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTTGGTTGTGCGTCGTCTTGCCGCCCTTTCATGCACGAAACCCGAGCTT
TACAAGTAGCTGATTTGCTTCATTGAACCCAAATGCTGAGCATCCAATTG
CCTGTGCCCACCGTGCGAGTGATCCCAGCACAGGAATCGATTTGCGCAGC
TGGATTGTTCCACAACCAAGAGGGTGTGAAAACCTACCGATACGTGATAA
TCTCGACGAGATCTGCCCGATGCCACCCGATTCCTTTCTGCTGGTATCTT
TCTTTGCGAAAATAAGAACGGCTGACACTCTCCATGGATTGGTGTTATTC
TGGGTGGGCTTTTCATCCGTGAATATGTTGCATCTTGGATAAGTCAGAAA
ACATTGTGCGCCGACCACGATACCTTTGCACTGAGAAGAGTTTGATTCGT
GTTTCATTAACCAACTGTTGTTGCTTGTTGTGTTGTATACATACTGATGA
CGTTTTTTTTTCCATGATGGTGCTGTTTTATGCCTCTCGTCGCCAGATGG
ACAAAGACGGTAGTGGCACCATCAGCTTGGAAGAGTTCGACCACGTCCTC
TCGAGCCAAGCCAATCTATCAAAAGGTGAGCCAATTACTCGAAAGGCGTA
CCGCAGGCGATGCGCATTACAACGTACCTTCGGGACCCCGGAGTAAAGTG
ATATCGATAGGATAGTAAGGCTAGGGGAACTGTATAGAGCCAACTTTGGC
AAGATAGGACAAAGTAGGAAGGAACGATTGGCCATGGGTGATCGGTCCTG
TCGGAACAATACTCGGTCCTCTCGAGGACGCGTGGTCAATGGGCTAGTCG
CTGGCATGCAAGACACGAGAGTACGCCCGGGAGTAAAGGTTGTCCGGCCG
TCTGCGAGTGTATGTTCCCTCGGCAGCAGAAGTGATCTACAAGTATCGGC
TGTTTTTTACGTTGGACTTGCTCTTTGGCGAGCTACCGCCGTTTGTTACC
GCGCTTCCATTCTGTTGGGTGAACGAACGTCGATGGTGCTTCTGCATGGG
GTCATCTCCCCTCCCTGGGTGCCATCGAATGCATGTAGAGGTGCGCGTGG
GGAAAGAGACCTCTACCTAGACCTAACCCTCCCGGTCGTTCAACGTTGAG
CTTGCACGGTGGATCACTCGTGCAGGTATGGCCTTATAAGACGTCGCCGA
TGCCAATTGTTGCGTTTTCTTCGGAAGATGTACCTCGTACCTCCGAGCTC
AATCAATGTCGTATCGGTCTTTCGGTGCGGGTTCACATGTTTCATCCTCT
TGGTGTCCTCTTGTTTTTCTACTCGCTTTCTTCGTTGTTTGCTCTTGACG
CTGTTGGTGTGTGGGTGGGTGGTGCTTGTTTTGGTTTTATCTGCGCAGCG
GACATCCGTGCGATCTTCGCAAGCGTGGATGTTGACAACGGTAACGAGCT
CAACTTCAACGAGTTCCTGGCGGCGACCTTGGAGAGACGGCAACTGGACG
AGATGAGACTTAGACTGGCCTTTGATAGGTTGGACTTCGACCACAGCGGC
ACAATTGATGGTGCGCCACTGCCTTTTTATGGGGACGACCATACCCTCTG
TTGGTTATGCGGTAGCATGCTAGTGTGACTTTGTTTCGCGTTCATGGCGC
GGTCATCGTTGTTGGCCAGGACGGCTGGCGTTTGTTGTGCCTTGCGTTGC
CATGCCTTGCACGGACCGATGGCATTGCGACAACAGCGGGGCTGGTAGCG
ATGGGAGACAAGATGTCTCGTATCGTTCGTGGCATGTCTCGTATCTTTCG
TAACATGGTTTTGTGTTTCTGGCGAACCGTTGTTCTGGCTCGTGTATCCT
TGTGTTGTGTATTGTTTGGGTTGCTCATGGTGGTTCTACTCTTTGTGTAG
CAAATCTACTTCGTGCTTCTGGTAGGCAGAACCAGGTTCTGTTCCGTTTC
GTCTCATACAGAACGCGCGAAGGCGTATGCATAGCTGGTGTTGTCGCTCA
TGCTCGACCTCTGCTCTTGCTGGTCTGTCATATTTTATTCTTGTCCTGCG
TTTGTTCGCCCACCTCAGCGACCGATCTTCGAAATATCGTGGGGAGCGAT
CTGGGGCAGGAGGGCATCGATGAGATCTTCAAGGAGTTCGACCTCAACAA
AGACGGCGAGATAGATTTCGGGTAAGCAGAAGCAGAATCGCACTCATTCG
GTACACTCAATGAAGGCACAGTACGGTATCGTAGTCGCGTCCCTAAGAGG
GAGGGACGGAGGGAGATAAGATAGGAAAGAGGGAGCCAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTCTGTATTTGCGCGCAGGCA
CCGAGATGCACAACGTCCTATCTAATATCCCAACCCTGATACTGTGTCCG
TGTGGACCTACTAAATATTACTATTTTGTTTTTGTTTTCCCTCCAGTGAG
TTTAAGCTGGCGATGCGCAAGGCCGATGCGCCGGGGCTGCGACTAGCAAC
CTACCGATCGGCTTCCATGCCACATCTCAACGTCAACTCCTCGAGCATCC
GGGTGAGTTAGTCAGCCACCTACATGTAGAATTATCTTTGTACCATACCA
TGGTTGTGCCGTTTCTTGCCTGCGGAGTAATGCTGTTTACAGTTTTGGTT
CTTTTTGGTTTGTTGAGGCTCGCTGTGCTCTTGGAGTCATAAACACGTCG
GCGGCGTGAGCAGAGCTGTTGAGAGCGGGAAACGTCACTGATGGCTGCTG
GGAGCTGATTCACACCAACATACGATGTTTTGCTTTCATCTTGCATAACG
CCTCTTGATGGCGCCATTAATATGTACCAGCTCTGATGAACACACTGTAC
CAGCTCTGATGAACACACTCCGGATGCCCGCCTTGTAGGCTACATGCGAT
AGTGCGTTCGGTTCCGTGGTTGTGTCCGTAGCAACGCTCATGAGCGAATC
TGTTGTTCCCTTGTGATTCCGCCTTGTCAAGGGGACCCACGGACGAGGAG
CGGTACGTTTTTCCTCAACTAAGTTGTAGCCTACGGGCGAAGCATAAGCC
ACGTCCTCAAAGTGTCCAAGAGTCCTACAGCAGTGCATGCGCTACAAATA
CAAGGCGTGCTGTGTGTCAACATTGTCGTGTCACTTTTCTTCGCGTCGCT
TCAAGGTTTCGGTGGTGGTGGTTTTTCGGTAGTTTCTACGCAAATGCTAC
TCTCTCTTCGTTATACTACGGGATTAAGTTCATTCCAGTGATCCCTCCAC
GTCCCGCCGTCCCGCCGCTGACCCCCCCCCCCCCCCCTATCCAGCACTTG
GAGCGAACAGTGCAAGACGCTCGCAAGCAGAAGCAGGCGGCCCTCCAGCA
GTTCGGCACGAGCGGGCCCACCCCCGAAGAGTCGATCGACGACATGGACA
CGTCCCTAGAGGAAGAGGACGAAGGGGACGACGACTCCAGCGCCGGCGGG
GCGGGCGGCGGCTACAACCGCAGAGAGGCGGTTATGCAGGCCTCCCTCCT
CCGGTGCGCGTCGGACCTGATCGAGAAGGGCCCGTTCCGACGAGCGACAC
TCGAGGTCTCCGACCCCGCCGCCCAGAAGGCATTGCGGGAAGCGGCCGTT
TACGGCGGAGCCCCCCCCCCCCCCTCTCGGGGTCCCTCAGGACCGGACCC
CCTGGCACGGAGGTCGAGCGAGGAGACGGCGGGGTCGGCGGGGGCCACGC
AGATGGCCGTGGACGGGTGGAGGTCGATGCCGCCCCAGGTGGAGGAGGAG
CCACATCCGTGGGGCCGCGGGGAGCACATGGTTACCGCGGCGACGGCGGT
GCAGAAGCTGGTGCAGTAGTAGGCTAGCGGTAGTGGTGATGGTGGTGAGG
ACTGCCGTAGGATAGGTTGCATGACATGACGCAAGATATCACACCCCCTG
GACCGATTTTCAGAGGTCGATTACTCGGCCGGACGAAACAGTGACGGTGC
CGCAAATGGCGGAAGGCGTTACAACCGCCTCGTGGAGAGTGTTCCCAAAG
CACGCCGTTTGATTTTGGCATCCTCTTCGTCGTGGAGTAGTCAGGCGTTG
CAAACTGGTCCTGGGGGTGTGGTGTCTTACATCATGGAACCTACGGTACG
AGCGCGGACTGCTGGGTTTCACCCGGCCGCTACAGAGCAGCATCGAGGTT
GGCAGCAGCATGGCAGCAATGATGGCGCTTTGGCGGCGATGTCGCCGAGC
AGACGAGCGGCGCGTGATGACAGCGACGGCCCCTCAGCGAGGTTGGCAGA
AGAATGACACCGACAACAGCTTTGGTGGCGATGTCGCCCGGCACATGAGC
GGTGTGCGATAATAGTCCCGCGGCGAAAGGTTAGAGAACAGCACTGGGTG
AAGGTTCCCTTGTACAGAGAAGGGCTTCAATAAATATTGCTTTTTCGATC
GGAATAGCGCCTGGCTTGCTACAAGCTCGGGCTTGGCCGTCATGGCGTCT
ACACTTGAGCAGCGTTTGGATGGAGTGAGGGCGGTGCTTTGCTCTTCGTA
GGGCCTGTTTTTTAAGAACCTGTTTTTTTATGCCAATGTGTGGTGTTGCG
TGCTCGATTGTGCTCCCCACTCTATGCACTCACGTGGCTCTATCGAAGAG
CTTCAGAGTGCCAATATTTCCTGTTGTACAGCCCTGAGTGCGGCCGTAAG
ACGTATGACGACGTTGGCGTTTGACGGATAGGGTACCTTTCCCGCTGCGG
GAGGGAACGGTCGTCTTGCGCAGATTTGTTAACTCGAGGTCCTCTCTACA
GCAGCAGTAGACTAGTCTAGTGGGTTCTTCGTTTCGTCTGCTTTTGGCAT
GGTGTTCGTCCGTGGCTAAGTTTGTTTTTAGCAGTTTAGTTGCATGAGTT
CCATCCGCAACTGTGTCACTGGGCATGTCTCTGACATTTGGGGCACGCTT
AGCAGGTATCTACCCCGTATGTGTTCGCCACGTCGCTGGGTTGTAACGCT
TTCACGAGCAGGGGAACAAACGCAGTGAGGAGGCCCGTTTTTTTTTTTAG
CACAAAATGTGTCGTGTCTAGACTACAATCCCACGACGTTATATGCATAT
TAATGCCGCGTTCCAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1472:251..5267+

>mRNA_E-siliculosus-1a_F_contig1472.2763.1 ID=mRNA_E-siliculosus-1a_F_contig1472.2763.1|Name=mRNA_E-siliculosus-1a_F_contig1472.2763.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2016bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1472:251..5267+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGGTGCTGTTTTATGCCTCTCGTCGCCAGATGGACAAAGACGGTAG
TGGCACCATCAGCTTGGAAGAGTTCGACCACGTCCTCTCGAGCCAAGCCA
ATCTATCAAAAGATGATGGTGCTGTTTTATGCCTCTCGTCGCCAGATGGA
CAAAGACGGTAGTGGCACCATCAGCTTGGAAGAGTTCGACCACGTCCTCT
CGAGCCAAGCCAATCTATCAAAAGCGGACATCCGTGCGATCTTCGCAAGC
GTGGATGTTGACAACGGTAACGAGCTCAACTTCAACGAGTTCCTGGCGGC
GACCTTGGAGAGACGGCAACTGGACGAGATGAGACTTAGACTGGCCTTTG
ATAGGTTGGACTTCGACCACAGCGGCACAATTGATGCGGACATCCGTGCG
ATCTTCGCAAGCGTGGATGTTGACAACGGTAACGAGCTCAACTTCAACGA
GTTCCTGGCGGCGACCTTGGAGAGACGGCAACTGGACGAGATGAGACTTA
GACTGGCCTTTGATAGGTTGGACTTCGACCACAGCGGCACAATTGATGCG
ACCGATCTTCGAAATATCGTGGGGAGCGATCTGGGGCAGGAGGGCATCGA
TGAGATCTTCAAGGAGTTCGACCTCAACAAAGACGGCGAGATAGATTTCG
GCGACCGATCTTCGAAATATCGTGGGGAGCGATCTGGGGCAGGAGGGCAT
CGATGAGATCTTCAAGGAGTTCGACCTCAACAAAGACGGCGAGATAGATT
TCGGTGAGTTTAAGCTGGCGATGCGCAAGGCCGATGCGCCGGGGCTGCGA
CTAGCAACCTACCGATCGGCTTCCATGCCACATCTCAACGTCAACTCCTC
GAGCATCCGGTGAGTTTAAGCTGGCGATGCGCAAGGCCGATGCGCCGGGG
CTGCGACTAGCAACCTACCGATCGGCTTCCATGCCACATCTCAACGTCAA
CTCCTCGAGCATCCGGCACTTGGAGCGAACAGTGCAAGACGCTCGCAAGC
AGAAGCAGGCGGCCCTCCAGCAGTTCGGCACGAGCGGGCCCACCCCCGAA
GAGTCGATCGACGACATGGACACGTCCCTAGAGGAAGAGGACGAAGGGGA
CGACGACTCCAGCGCCGGCGGGGCGGGCGGCGGCTACAACCGCAGAGAGG
CGGTTATGCAGGCCTCCCTCCTCCGGTGCGCGTCGGACCTGATCGAGAAG
GGCCCGTTCCGACGAGCGACACTCGAGGTCTCCGACCCCGCCGCCCAGAA
GGCATTGCGGGAAGCGGCCGTTTACGGCGGAGCCCCCCCCCCCCCCTCTC
GGGGTCCCTCAGGACCGGACCCCCTGGCACGGAGGTCGAGCGAGGAGACG
GCGGGGTCGGCGGGGGCCACGCAGATGGCCGTGGACGGGTGGAGGTCGAT
GCCGCCCCAGGTGGAGGAGGAGCCACATCCGTGGGGCCGCGGGGAGCACA
TGGTTACCGCGGCGACGGCGGTGCAGAAGCTGGTGCAGTAGCACTTGGAG
CGAACAGTGCAAGACGCTCGCAAGCAGAAGCAGGCGGCCCTCCAGCAGTT
CGGCACGAGCGGGCCCACCCCCGAAGAGTCGATCGACGACATGGACACGT
CCCTAGAGGAAGAGGACGAAGGGGACGACGACTCCAGCGCCGGCGGGGCG
GGCGGCGGCTACAACCGCAGAGAGGCGGTTATGCAGGCCTCCCTCCTCCG
GTGCGCGTCGGACCTGATCGAGAAGGGCCCGTTCCGACGAGCGACACTCG
AGGTCTCCGACCCCGCCGCCCAGAAGGCATTGCGGGAAGCGGCCGTTTAC
GGCGGAGCCCCCCCCCCCCCCTCTCGGGGTCCCTCAGGACCGGACCCCCT
GGCACGGAGGTCGAGCGAGGAGACGGCGGGGTCGGCGGGGGCCACGCAGA
TGGCCGTGGACGGGTGGAGGTCGATGCCGCCCCAGGTGGAGGAGGAGCCA
CATCCGTGGGGCCGCGGGGAGCACATGGTTACCGCGGCGACGGCGGTGCA
GAAGCTGGTGCAGTAG
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