mRNA_E-siliculosus-1a_F_contig1470.2759.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1470.2759.1
Unique NamemRNA_E-siliculosus-1a_F_contig1470.2759.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1470.2759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1470contigE-siliculosus-1a_F_contig1470:21176..21620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size345
Model size445
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1470.2759.1prot_E-siliculosus-1a_F_contig1470.2759.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1470 21223..21567 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.704811-UTR-E-siliculosus-1a_F_contig1470:21175..212221622927981.704811-UTR-E-siliculosus-1a_F_contig1470:21175..21222Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1470 21176..21222 +
1696318761.9257815-UTR-E-siliculosus-1a_F_contig1470:21175..212221696318761.9257815-UTR-E-siliculosus-1a_F_contig1470:21175..21222Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1470 21176..21222 +
1622927981.7728407-UTR-E-siliculosus-1a_F_contig1470:21567..216201622927981.7728407-UTR-E-siliculosus-1a_F_contig1470:21567..21620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1470 21568..21620 +
1696318761.940589-UTR-E-siliculosus-1a_F_contig1470:21567..216201696318761.940589-UTR-E-siliculosus-1a_F_contig1470:21567..21620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1470 21568..21620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.7198124-CDS-E-siliculosus-1a_F_contig1470:21222..215671622927981.7198124-CDS-E-siliculosus-1a_F_contig1470:21222..21567Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 21223..21567 +
1696318761.9332583-CDS-E-siliculosus-1a_F_contig1470:21222..215671696318761.9332583-CDS-E-siliculosus-1a_F_contig1470:21222..21567Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 21223..21567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1470.2759.1

>prot_E-siliculosus-1a_F_contig1470.2759.1 ID=prot_E-siliculosus-1a_F_contig1470.2759.1|Name=mRNA_E-siliculosus-1a_F_contig1470.2759.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=115bp
MPTRPSGHQQHASPTLLLTVFLCVYLFLLNYSRRRLCQGEHQVSRLSRSG
IDRLLLVLLLLVHAVDKIWYMHPFLADAGPIFSNRERIAAGCVDIYPTCL
AIVRCGRRGGRLRS*
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mRNA from alignment at E-siliculosus-1a_F_contig1470:21176..21620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1470.2759.1 ID=mRNA_E-siliculosus-1a_F_contig1470.2759.1|Name=mRNA_E-siliculosus-1a_F_contig1470.2759.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=445bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1470:21176..21620+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAGAGGATTCATGATTGAGATGTGGGCGTTTCTCCATGCACTGCCATG
CCCACGAGACCGAGCGGGCATCAACAACATGCATCGCCTACGTTATTACT
TACAGTCTTTCTGTGCGTGTATTTATTTCTCCTTAATTACTCACGAAGAA
GATTGTGCCAAGGAGAGCATCAAGTCAGCAGGCTAAGCAGATCAGGCATA
GATAGATTGTTGCTCGTGTTGTTGTTGCTGGTTCATGCTGTCGACAAAAT
ATGGTACATGCACCCTTTTCTGGCAGATGCAGGGCCGATCTTCTCAAACA
GGGAACGCATAGCGGCGGGGTGTGTGGACATTTACCCTACGTGCCTTGCC
ATCGTGCGTTGTGGACGGAGAGGCGGGCGCTTACGTAGCTGACTGCACGA
CAGAGCGTGACATATTTTTTTTTTATTTTCTAAATATGACCCAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1470:21176..21620+

>mRNA_E-siliculosus-1a_F_contig1470.2759.1 ID=mRNA_E-siliculosus-1a_F_contig1470.2759.1|Name=mRNA_E-siliculosus-1a_F_contig1470.2759.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1470:21176..21620+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCACGAGACCGAGCGGGCATCAACAACATGCATCGCCTACGTTATT
ACTTACAGTCTTTCTGTGCGTGTATTTATTTCTCCTTAATTACTCACGAA
GAAGATTGTGCCAAGGAGAGCATCAAGTCAGCAGGCTAAGCAGATCAGGC
ATAGATAGATTGTTGCTCGTGTTGTTGTTGCTGGTTCATGCTGTCGACAA
AATATGGTACATGCACCCTTTTCTGGCAGATGCAGGGCCGATCTTCTCAA
ACAGGGAACGCATAGCGGCGGGGTGTGTGGACATTTACCCTACGTGCCTT
GCCATCGTGCGTTGTGGACGGAGAGGCGGGCGCTTACGTAGCTGAATGCC
CACGAGACCGAGCGGGCATCAACAACATGCATCGCCTACGTTATTACTTA
CAGTCTTTCTGTGCGTGTATTTATTTCTCCTTAATTACTCACGAAGAAGA
TTGTGCCAAGGAGAGCATCAAGTCAGCAGGCTAAGCAGATCAGGCATAGA
TAGATTGTTGCTCGTGTTGTTGTTGCTGGTTCATGCTGTCGACAAAATAT
GGTACATGCACCCTTTTCTGGCAGATGCAGGGCCGATCTTCTCAAACAGG
GAACGCATAGCGGCGGGGTGTGTGGACATTTACCCTACGTGCCTTGCCAT
CGTGCGTTGTGGACGGAGAGGCGGGCGCTTACGTAGCTGA
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