mRNA_E-siliculosus-1a_F_contig147.2755.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig147.2755.1
Unique NamemRNA_E-siliculosus-1a_F_contig147.2755.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: D8LFU2_ECTSI (Sec23_helical domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFU2_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.390e-73
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 1
Query:  349 MSRFTQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVELGSG 729
            MSRFTQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARP+VYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV+LGSG
Sbjct:    1 MSRFTQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPLVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVDLGSG 127          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A835ZE54_9STRA (zf-Sec23_Sec24 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE54_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.920e-36
Identity = 88/221 (39.82%), Postives = 124/221 (56.11%), Query Frame = 1
Query:   91 PDERPIRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCG-HMS-RFTQ-------ELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVELGS 726
            P+  PIRFT   FP SAA+K+A+G PW  +++PFT     A          P+P D VARC  CFAYIN +   + R+W+C+LCG H+S R  Q       +  RYR     + +PEL  + ++ ELP   +       E    + Y A E  A RP VYLA+VDE+GG  +   +++ L   V  LPD    G++T SDRVG+ D+AAPLP V+  ++G+
Sbjct:   25 PEALPIRFTTHTFPLSAAVKDASGIPWGVSITPFTQQ--QATDAAMDSASTPMPSDLVARCSTCFAYINPYCVVSRRWWRCSLCGAHVSLRHAQPTVATGSDPERYRQPHPLQKVPELIHQVLDLELPFGPQ-------ETSSLHQYAAAE--ADRPPVYLALVDETGGAAFLSAVSQALQRVVSTLPDHHCFGLITFSDRVGIFDVAAPLPLVRFADIGA 234          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A388JLL3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JLL3_CHABU)

HSP 1 Score: 101 bits (252), Expect = 9.470e-21
Identity = 71/206 (34.47%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFT--DVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQELS-RYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
            IRF+L  FP   A+ + +G PW C V PF   D       + QR        + VARCE+CFAYIN +       WKC+LC   + F++E   RY +R     L EL +  V+FE+  D       +GEV    G L   P      VY+A VD +GG E+ D++   L   ++ L      G+VT S ++GL D+   +P  + V
Sbjct:    3 IRFSLNKFPADGALLSKSGVPWGCVVQPFALEDESSLLRKNLQR-------AEDVARCEDCFAYINGYCHVERYSWKCSLCDCYNSFSEEQQKRYGNRSEHMYLHELVRSQVDFEVAADE------DGEV---GGDLHTRP------VYIAAVDLTGGEEFLDLVKSALLAALEALSPAALFGLVTFSHKIGLYDVQGAVPVAKYV 186          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A1Y1HSD2_KLENI (Sec23/Sec24 zinc finger family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSD2_KLENI)

HSP 1 Score: 95.9 bits (237), Expect = 7.470e-19
Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPF--TDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFT-QELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
            IRF++ +FP   A+ +  G PW C V PF  +D     G D             VARCEECFAYIN+       +W+CALC   ++F  ++L+RY ++       EL+   VE ++P++    + ++                 RPV Y+A VD S G ++ +++   L   ++ LP     G+VT S ++GL D    +P V+ V
Sbjct:    3 IRFSVNSFPKDGAVLDDTGLPWGCVVQPFAISDAQPLLGADTNL-----TSASDVARCEECFAYINAACRIKPYWWRCALCDAENQFAGEQLARYSNQVLLSQRMELSPGLVELDVPVEEDREVGKD--------------IHTRPV-YIAAVDLSAGEDFLELVKSALLAALEALPPAALFGLVTFSHKLGLYDCQGDIPVVKHV 188          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: Q9ZQH3_ARATH (At2g27460 n=39 Tax=Brassicaceae TaxID=3700 RepID=Q9ZQH3_ARATH)

HSP 1 Score: 94.4 bits (233), Expect = 2.500e-18
Identity = 62/209 (29.67%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFT-----DVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQE-LSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
            +R T+  FP  +  + A+G PW  TV+PF       +G   G +G   P          RCE C+AY N++ E     W C+LCG ++    + ++RY +     S+PE+T   ++ E+PLD                   +E   ARPV Y+A +D S   E+ ++    L   ++ L      G+VT S ++GL D+  P+P V+ V
Sbjct:    3 VRATVSRFPIDSDAQEASGLPWGLTVTPFAAKDENGIGPACGSNGHLLP----------RCENCYAYFNTYCELDQWAWNCSLCGTLNGLPSDAIARYSNPH---SIPEMTSSFIDLEMPLDGS----------------EEEMTQARPV-YVAAIDISSSEEFLELTKSALLAALEALSPGALFGLVTFSHKIGLYDVQGPIPVVKNV 181          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: D8TML6_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TML6_VOLCA)

HSP 1 Score: 94.4 bits (233), Expect = 2.570e-18
Identity = 64/209 (30.62%), Postives = 108/209 (51.67%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCG-HMSRFTQELSRYR-DRRTFRSLPELTQETVEF--ELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVEL 720
            + FTL+ FP + ++K  +G P++C + P+  +G     D   G    V    +ARC +C++YIN +  F +  W C+LC  H +   Q+  RYR D    + LPE+  E  E   E P+      +   +  L +      PA   PVV +A+VD + G E+ +++   L+  ++ LP   R  ++T+S+R+GL D+ +  P V+ V L
Sbjct:    3 VDFTLKRFPINGSLKEQSGLPFSCVLQPYHRLGEK---DAAAGDATAVRSGAIARCAQCYSYINCYCVFDTAGWVCSLCNRHNALKPQQQKRYRLDPSILQVLPEVRSEVFETLAEEPIPVAMPPLEGSQAALHDPGSVSGPA---PVV-VALVDTAAGEEFLELVRSSLEAALEALPPVTRFALITMSNRLGLHDVRSSEPSVRYVPL 204          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A8J4EXZ9_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EXZ9_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 3.600e-18
Identity = 63/209 (30.14%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCG-HMSRFTQELSRYR-DRRTFRSLPELTQETVEF--ELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVEL 720
            + FTL+ FP +  +K  +G P++C + P+  +       G     R    + +ARC +C++YIN +  F +  W C+LC  H +   Q+  RYR D    + LPE+  E  E   E P+      +       ++      PA   PVV +A+VD + G E+ +++   L+  ++ LP   R  ++T+S+R+GL D+ AP P V+ V L
Sbjct:    3 VDFTLKRFPINGRLKEHSGLPFSCVLQPYHRLPDKEAATGDASAAR---SNSIARCAQCYSYINCYCVFDTAGWVCSLCNRHNALKPQQQKRYRLDPTVLQELPEVRSEVFETLAEEPIPVPMPALEGSPAAQQDPGCVSGPA---PVV-VALVDTAAGEEFLELVRSSLEAALEALPPVTRFALITMSNRLGLHDVRAPEPSVRYVSL 204          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: UPI00053C92FF (protein transport protein SEC24-like isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C92FF)

HSP 1 Score: 92.8 bits (229), Expect = 8.430e-18
Identity = 63/206 (30.58%), Postives = 96/206 (46.60%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFT--DVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQE-LSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
            ++ T+  FP  A  + A+G PW  TV+PF   D  G     G  G         + RCE C+AY NS+ E     W C+LCG ++  + E ++RY      +S PE+    ++ ELPLD                   +E   ARPV Y+A +D S   E+ ++    L   ++ L      G+ T S ++GL D+  P+P V+ V
Sbjct:    3 VQATVSRFPFDADAQEASGLPWGLTVTPFAAKDENGVGPAYGSNG-------HLLPRCENCYAYFNSYCELDQWAWNCSLCGTLNGLSSEAIARY---SLPQSSPEMISSFIDLELPLDGS----------------EEEMTQARPV-YVAAIDLSSSEEFLELTKSALLAALEALSPGALFGLATFSHKIGLYDVQGPIPVVKNV 181          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A061RZK4_9CHLO (Sec23 sec24 transport family protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZK4_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.190e-17
Identity = 69/217 (31.80%), Postives = 103/217 (47.47%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGP---PRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQELSRYRDRRTFRS-LPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARP--------VVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVEL 720
            + F+L  FP S  IK   G P+ C V PF            + P   P    +D VARC EC+AYIN +  F    W C+LCG+ + + +       R + RS LPEL    V  E+   +KG ++       E     +E AAA P         VY+AVVD + G E+ +++   L   ++ LP     G+++  D++GL D+   +P V+ V L
Sbjct:    3 LSFSLRKFPVSGEIKGQCGLPFGCVVQPFAQF--------DKLPLDTPLRSNLDSVARCSECYAYINKYCLFERGGWVCSLCGNYNDYHRLFHNKYVRESTRSKLPELQDSIV--EIKCSAKGMLLE-----AEEAGDPEEKAAAIPDNVELVGRPVYVAVVDLACGEEFLELVKSSLLAALEALPPVALFGIISFCDKIGLHDVQGKVPIVKYVPL 204          
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: G5DW79_SILLA (Sec23/sec24 transport family protein (Fragment) n=2 Tax=Silene latifolia TaxID=37657 RepID=G5DW79_SILLA)

HSP 1 Score: 92.0 bits (227), Expect = 1.550e-17
Identity = 65/210 (30.95%), Postives = 101/210 (48.10%), Query Frame = 1
Query:  106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPID--RVARCEECFAYINSFSEFTSRFWKCALCGHMSRF-TQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVELGS 726
            +R T   FP     + +AG PW  T++PF+       G  + G P  + ID   + RCE C+AY N++ E     W C+LCG ++   T  +++Y   +   S PE++   V+ ELPL+                    E   ARPV Y+A VD S   E+ D++   L   ++ LP     G+ T S ++GL D+  P+P V+ V + S
Sbjct:    3 VRATANRFPIDQDEQESAGIPWGVTLTPFS-------GRDENGNPPAIGIDGESLPRCENCWAYFNTYCELDQWAWTCSLCGTLNGLSTHCIAKYSHPQ---SCPEMSSSFVDLELPLEGSDG----------------ESMQARPV-YVAAVDLSSSEEFIDLIKSALLAALEALPTGALFGLATFSLKLGLYDVQGPVPVVKNVFIPS 185          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFU2_ECTSI1.390e-7398.43Sec23_helical domain-containing protein n=2 Tax=Ec... [more]
A0A835ZE54_9STRA3.920e-3639.82zf-Sec23_Sec24 domain-containing protein n=1 Tax=T... [more]
A0A388JLL3_CHABU9.470e-2134.47Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A1Y1HSD2_KLENI7.470e-1931.07Sec23/Sec24 zinc finger family protein n=1 Tax=Kle... [more]
Q9ZQH3_ARATH2.500e-1829.67At2g27460 n=39 Tax=Brassicaceae TaxID=3700 RepID=Q... [more]
D8TML6_VOLCA2.570e-1830.62Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4EXZ9_9CHLO3.600e-1830.14Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
UPI00053C92FF8.430e-1830.58protein transport protein SEC24-like isoform X1 n=... [more]
A0A061RZK4_9CHLO1.190e-1731.80Sec23 sec24 transport family protein n=1 Tax=Tetra... [more]
G5DW79_SILLA1.550e-1730.95Sec23/sec24 transport family protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig147contigE-siliculosus-1a_F_contig147:73090..76311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size756
Model size759
Exons6
Ec32 orthologEc-01_000930.2
Ec32 ortholog descriptionvon Willebrand factor, type A
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsCOG5028@1,KOG1985@2759
EggNOG free text desc.ER to Golgi vesicle-mediated transport
KEGG ModuleM00404
KEGG Pathwayko04141,map04141
KEGG koko:K14007
Seed eggNOG ortholog2880.D8LFU2
Seed ortholog evalue2.4e-64
Seed ortholog score252.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig147.2755.1prot_E-siliculosus-1a_F_contig147.2755.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig147 73090..76310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.4534733-CDS-E-siliculosus-1a_F_contig147:73089..732281622927981.4534733-CDS-E-siliculosus-1a_F_contig147:73089..73228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 73090..73228 +
1696318761.8485568-CDS-E-siliculosus-1a_F_contig147:73089..732281696318761.8485568-CDS-E-siliculosus-1a_F_contig147:73089..73228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 73090..73228 +
1622927981.475389-CDS-E-siliculosus-1a_F_contig147:73967..741481622927981.475389-CDS-E-siliculosus-1a_F_contig147:73967..74148Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 73968..74148 +
1696318761.8589203-CDS-E-siliculosus-1a_F_contig147:73967..741481696318761.8589203-CDS-E-siliculosus-1a_F_contig147:73967..74148Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 73968..74148 +
1622927981.490383-CDS-E-siliculosus-1a_F_contig147:74466..745721622927981.490383-CDS-E-siliculosus-1a_F_contig147:74466..74572Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 74467..74572 +
1696318761.8669245-CDS-E-siliculosus-1a_F_contig147:74466..745721696318761.8669245-CDS-E-siliculosus-1a_F_contig147:74466..74572Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 74467..74572 +
1622927981.5121634-CDS-E-siliculosus-1a_F_contig147:74946..750031622927981.5121634-CDS-E-siliculosus-1a_F_contig147:74946..75003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 74947..75003 +
1696318761.8748226-CDS-E-siliculosus-1a_F_contig147:74946..750031696318761.8748226-CDS-E-siliculosus-1a_F_contig147:74946..75003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 74947..75003 +
1622927981.5292072-CDS-E-siliculosus-1a_F_contig147:75481..755951622927981.5292072-CDS-E-siliculosus-1a_F_contig147:75481..75595Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 75482..75595 +
1696318761.882457-CDS-E-siliculosus-1a_F_contig147:75481..755951696318761.882457-CDS-E-siliculosus-1a_F_contig147:75481..75595Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 75482..75595 +
1622927981.5455396-CDS-E-siliculosus-1a_F_contig147:76151..763101622927981.5455396-CDS-E-siliculosus-1a_F_contig147:76151..76310Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 76152..76310 +
1696318761.889838-CDS-E-siliculosus-1a_F_contig147:76151..763101696318761.889838-CDS-E-siliculosus-1a_F_contig147:76151..76310Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 76152..76310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig147.2755.1

>prot_E-siliculosus-1a_F_contig147.2755.1 ID=prot_E-siliculosus-1a_F_contig147.2755.1|Name=mRNA_E-siliculosus-1a_F_contig147.2755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=252bp
SDVQTPAASRTPTASMSDAEESDSNIPYFFPDERPIRFTLEAFPHSAAIK
NAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINS
FSEFTSRFWKCALCGHMSRFTQELSRYRDRRTFRSLPELTQETVEFELPL
DSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEV
LDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVELGSGMGAGGGG
GQ
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mRNA from alignment at E-siliculosus-1a_F_contig147:73090..76311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig147.2755.1 ID=mRNA_E-siliculosus-1a_F_contig147.2755.1|Name=mRNA_E-siliculosus-1a_F_contig147.2755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3222bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:73090..76311+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCAGACGTTCAGACGCCTGCAGCCAGCAGGACGCCTACGGCAAGCATGTC TGACGCGGAGGAGAGCGACAGCAACATCCCCTACTTCTTCCCGGACGAGC GCCCCATCCGCTTCACGCTGGAAGCTTTTCCACACTCAGGTTAGAAGTGC CCCTCGTGTCATTCCCTGTTCCGCCGCAGGAGGCGTTTCACGGACTCAAG GGACGGCCCTGGCGCCCTCGCACGACACACCGGTGGCGGTGACACACAAA GTAGTTGATAGCTTCACTTGGCCATGCGCGTGCGTATGCCCGGAATACAG CACGGGCCTACCTAGACTACGCGATGTACACACAGGACCCGTACTATGTT TCGTGAGCGGCTCGTGGACAACGCAGTGTTGGCAACCGGTGACCGGTACA AGCCCGTTCGCGGCACCCCACCAGGGCTACGAACACCGTGCACGGGTTTG GTTGCACTGAGAGCTAGGGTCAGCCCGAGTTTTCCGCGCCCAATCGGTTC ACCCGACGTTACATGCGGCAGAAATGTGTAGTCGTCTGCGGCTGAGTCTA CTGCTGTTTGTAACGTACTTATGCACATAGACGGACATAGTGCCACCTAC TCTCGTTTTCGTCTGTTCGCTGTCATCACCATACTGTCGTCTCCATTCCC TGGCGTGTGCATGCCTCGACACACACATGGAAACAGGACCGTTTTCGTGG TGGCCTACCATATACTGTAGTTATAGGTGTTCAATTCGATGGTGATTGTG CGCCTGCCGTAGTATTCGGTCCACTGCCAACATCGCCCCTATTAATAGCA GTTTCCTCCCTTGAATTTTTCCCCGACGGCCCTGACGACCCTGCCGTGAT CAATGCGCTGCCCCGATGCCTACACTAGCCGCCATCAAGAACGCCGCTGG GGCGCCGTGGGCATGTACCGTTTCTCCGTTCACGGATGTGGGGGGCCCCG CGGGCGGGGACGGACAGCGGGGACCCCCTCGCCCTGTACCGATCGACCGA GTTGCGAGATGCGAAGAGTGCTTCGCCTACATCAACAGCTTCAGCGAGTT CACCTCTAGGTTCGTGTGTGATGTTGGAGGGCGAACAGGCCTGTTCGGAT AGGCCGACCAGCTGAGCGTCCTGTGAAACGAATGGGCTTCGCGCGCGGAT GAACACAGACAGAATTACGACCAGAAGAGGAGCTTTCTTGACGTGCGGTC CAAGCAGGGGCATTGCCACCCCACGCTCTTGACGAAAGCAGGCATTCTCG CAGGTCACTGGCGCCTGCGTCGCGCCCACCCATCCGGATGCCTCTTGTCA ACCGAATTGCAGCAAGCACTGGCCTTAGCTCCATCCTCCAATGTCGGCTG TTTCGTTCGTGCGCCGAACGCCGACAGGTTCTGGAAGTGTGCGCTGTGCG GACATATGAGCCGTTTCACGCAGGAGCTCTCCCGCTACCGCGACAGGCGC ACCTTCCGCTCCTTACCGGAACTGACACAAGAGGTTGGTGAACCTTTTTT GTTCTTTGAGTCTGAAGACGTGCTTTCCACCCGCTTCATCACCGTGGGGG TTCTCGAGGTCATTGATGGACGAAATCGGTGTTGGCTAAGGTGGCATGTT GGTGTCGGCTAGTTCTACAGTACTGCGGTGTGGTTTTGTTTTTCGGAGTG TTGGCTCTGTGCACGAGAAGCCCTTCCCCCCGGCGGTGCTTTCCTTTCTT GGAACCCTCCCAACAGCAGCACGGCCGGCTGTGTTGGCTGGCGCCGTTGC TAGCGGTAGGAAACACGATGACATCGACTATGCTAGACTACACCTCCCTG TGTCAAGGGTTCAAGTTCATTGCTCGTGCACCGTCCGTACACCTGAAATA CTGGCAGACGGTGGAGTTCGAGCTACCTCTGGACAGCAAGGGAGCCATGA TGCGAAACGGAGAGGTAAGGCGGTTCTCCCCCCCCCCCCGCCCTTTCCTT GGAGTACCGAATGTCCTAATGAGCATCACCTTCCCAGGAACACAGCAGTG TGCCAGCAACATATCCACAGCGCCCGACTTTCGCCGCCAATGCGCACGCG GCACTTCCGCACGTAATAGCAAGCGTTACGGCGCTGTTGAGTGAGAGGTG GGGTTGTTGAATGGCGGCATCACTCGGGCTTGCCAGCGCGACAGCTGTGG TAGGATGTCGTCGCGTCGTATGCGAGTCGGGGCAACGGCGCCTGCTTTTC GCCGTATCCAGAGGGGGGAATCTCGGTTGCGGTCCTCATCTACCAGAACA ATTTTTCATCGCATGACTCCGAGATGGCGGAACAGGACGTGTGCCGGCAC TTGCTCTTCGCGTTCATAACCTTGCGTTTCCTGCATGAGGGATGAGCTCA TACCCCCCCCGTTGCTCTGTTTTCGTACGCATGCCTTCCCAGGTGCTGCT CGAAAACGGGTACCTGGCTCAAGAGCCGGCGGCGGCCCGGCCGGTGGTGT ACCTGGCCGTCGTCGATGAGTCCGGAGGGCCGGAATACCATGACGTCATG GCCGAGGTACTGTACGACGACTTGACAGTCAGTCCCCGCGAAGCCTTGTG CGTCCATCTGCCGGCATTTTTTATGTCCTTTTCCCCGTCATGAACACCTT TTTCGGACGTCTTTTGTTTTTCAGGTTTTTATTTTTTCGAAAGCTCGTGA GATTTCGGGTGTGTGGTGCGCTTGTTGCCCGTGGGGGACCGGGCGAGCAG CCACATGGGCGCAGCATGACGAACTCACGTTGACAGAGAAGACAAATCAG CACCCCCGCTGCGCTCCCGCCCGCGCGTGCCATTTCCCGCTTTCCCGTCG GTATACGGGCGATGATTGGGGGGGGGGGGACGCAAACTGGACACGCGCAA AAGAAATATAGAAAGGGAAACTGATTGCTTGCCGTATAAACTTGGTACAT GGAACGCGTTATTCACGCTCATCATAATCATCTCGACTGCCTGCCTCGCT TGTTTGTGGTGTCTTTTGTGTGTTCTCCCTCTCACCCTCTCTTTCTCCCT TTATCCTCCCTCCCCCCCTCTCTCCCTCTCCCTCTCCCTCTCTGTGTCTC CTTCTCTGCCAGGTGCTGGACACGTGCGTTCAGCGCCTTCCGGACGATTG CCGGCTGGGCGTGGTGACGGTATCGGACCGCGTGGGTCTGGTCGATCTCG CGGCGCCCTTGCCGCACGTACAGCTCGTCGAGCTGGGGTCGGGAATGGGG GCCGGCGGCGGCGGAGGGCAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig147:73090..76311+

>mRNA_E-siliculosus-1a_F_contig147.2755.1 ID=mRNA_E-siliculosus-1a_F_contig147.2755.1|Name=mRNA_E-siliculosus-1a_F_contig147.2755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:73090..76311+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCAGACGTTCAGACGCCTGCAGCCAGCAGGACGCCTACGGCAAGCATGTC
TGACGCGGAGGAGAGCGACAGCAACATCCCCTACTTCTTCCCGGACGAGC
GCCCCATCCGCTTCACGCTGGAAGCTTTTCCACACTCAGTCAGACGTTCA
GACGCCTGCAGCCAGCAGGACGCCTACGGCAAGCATGTCTGACGCGGAGG
AGAGCGACAGCAACATCCCCTACTTCTTCCCGGACGAGCGCCCCATCCGC
TTCACGCTGGAAGCTTTTCCACACTCAGCCGCCATCAAGAACGCCGCTGG
GGCGCCGTGGGCATGTACCGTTTCTCCGTTCACGGATGTGGGGGGCCCCG
CGGGCGGGGACGGACAGCGGGGACCCCCTCGCCCTGTACCGATCGACCGA
GTTGCGAGATGCGAAGAGTGCTTCGCCTACATCAACAGCTTCAGCGAGTT
CACCTCTAGCCGCCATCAAGAACGCCGCTGGGGCGCCGTGGGCATGTACC
GTTTCTCCGTTCACGGATGTGGGGGGCCCCGCGGGCGGGGACGGACAGCG
GGGACCCCCTCGCCCTGTACCGATCGACCGAGTTGCGAGATGCGAAGAGT
GCTTCGCCTACATCAACAGCTTCAGCGAGTTCACCTCTAGGTTCTGGAAG
TGTGCGCTGTGCGGACATATGAGCCGTTTCACGCAGGAGCTCTCCCGCTA
CCGCGACAGGCGCACCTTCCGCTCCTTACCGGAACTGACACAAGAGGTTC
TGGAAGTGTGCGCTGTGCGGACATATGAGCCGTTTCACGCAGGAGCTCTC
CCGCTACCGCGACAGGCGCACCTTCCGCTCCTTACCGGAACTGACACAAG
AGACGGTGGAGTTCGAGCTACCTCTGGACAGCAAGGGAGCCATGATGCGA
AACGGAGAGACGGTGGAGTTCGAGCTACCTCTGGACAGCAAGGGAGCCAT
GATGCGAAACGGAGAGGTGCTGCTCGAAAACGGGTACCTGGCTCAAGAGC
CGGCGGCGGCCCGGCCGGTGGTGTACCTGGCCGTCGTCGATGAGTCCGGA
GGGCCGGAATACCATGACGTCATGGCCGAGGTGCTGCTCGAAAACGGGTA
CCTGGCTCAAGAGCCGGCGGCGGCCCGGCCGGTGGTGTACCTGGCCGTCG
TCGATGAGTCCGGAGGGCCGGAATACCATGACGTCATGGCCGAGGTGCTG
GACACGTGCGTTCAGCGCCTTCCGGACGATTGCCGGCTGGGCGTGGTGAC
GGTATCGGACCGCGTGGGTCTGGTCGATCTCGCGGCGCCCTTGCCGCACG
TACAGCTCGTCGAGCTGGGGTCGGGAATGGGGGCCGGCGGCGGCGGAGGG
CAGGTGCTGGACACGTGCGTTCAGCGCCTTCCGGACGATTGCCGGCTGGG
CGTGGTGACGGTATCGGACCGCGTGGGTCTGGTCGATCTCGCGGCGCCCT
TGCCGCACGTACAGCTCGTCGAGCTGGGGTCGGGAATGGGGGCCGGCGGC
GGCGGAGGGCAG
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