mRNA_E-siliculosus-1a_F_contig147.2755.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: D8LFU2_ECTSI (Sec23_helical domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFU2_ECTSI) HSP 1 Score: 247 bits (631), Expect = 1.390e-73 Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 1
Query: 349 MSRFTQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVELGSG 729
MSRFTQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARP+VYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV+LGSG
Sbjct: 1 MSRFTQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPLVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVDLGSG 127
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A835ZE54_9STRA (zf-Sec23_Sec24 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE54_9STRA) HSP 1 Score: 145 bits (367), Expect = 3.920e-36 Identity = 88/221 (39.82%), Postives = 124/221 (56.11%), Query Frame = 1
Query: 91 PDERPIRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCG-HMS-RFTQ-------ELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVELGS 726
P+ PIRFT FP SAA+K+A+G PW +++PFT A P+P D VARC CFAYIN + + R+W+C+LCG H+S R Q + RYR + +PEL + ++ ELP + E + Y A E A RP VYLA+VDE+GG + +++ L V LPD G++T SDRVG+ D+AAPLP V+ ++G+
Sbjct: 25 PEALPIRFTTHTFPLSAAVKDASGIPWGVSITPFTQQ--QATDAAMDSASTPMPSDLVARCSTCFAYINPYCVVSRRWWRCSLCGAHVSLRHAQPTVATGSDPERYRQPHPLQKVPELIHQVLDLELPFGPQ-------ETSSLHQYAAAE--ADRPPVYLALVDETGGAAFLSAVSQALQRVVSTLPDHHCFGLITFSDRVGIFDVAAPLPLVRFADIGA 234
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A388JLL3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JLL3_CHABU) HSP 1 Score: 101 bits (252), Expect = 9.470e-21 Identity = 71/206 (34.47%), Postives = 101/206 (49.03%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFT--DVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQELS-RYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
IRF+L FP A+ + +G PW C V PF D + QR + VARCE+CFAYIN + WKC+LC + F++E RY +R L EL + V+FE+ D +GEV G L P VY+A VD +GG E+ D++ L ++ L G+VT S ++GL D+ +P + V
Sbjct: 3 IRFSLNKFPADGALLSKSGVPWGCVVQPFALEDESSLLRKNLQR-------AEDVARCEDCFAYINGYCHVERYSWKCSLCDCYNSFSEEQQKRYGNRSEHMYLHELVRSQVDFEVAADE------DGEV---GGDLHTRP------VYIAAVDLTGGEEFLDLVKSALLAALEALSPAALFGLVTFSHKIGLYDVQGAVPVAKYV 186
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A1Y1HSD2_KLENI (Sec23/Sec24 zinc finger family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSD2_KLENI) HSP 1 Score: 95.9 bits (237), Expect = 7.470e-19 Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPF--TDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFT-QELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
IRF++ +FP A+ + G PW C V PF +D G D VARCEECFAYIN+ +W+CALC ++F ++L+RY ++ EL+ VE ++P++ + ++ RPV Y+A VD S G ++ +++ L ++ LP G+VT S ++GL D +P V+ V
Sbjct: 3 IRFSVNSFPKDGAVLDDTGLPWGCVVQPFAISDAQPLLGADTNL-----TSASDVARCEECFAYINAACRIKPYWWRCALCDAENQFAGEQLARYSNQVLLSQRMELSPGLVELDVPVEEDREVGKD--------------IHTRPV-YIAAVDLSAGEDFLELVKSALLAALEALPPAALFGLVTFSHKLGLYDCQGDIPVVKHV 188
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: Q9ZQH3_ARATH (At2g27460 n=39 Tax=Brassicaceae TaxID=3700 RepID=Q9ZQH3_ARATH) HSP 1 Score: 94.4 bits (233), Expect = 2.500e-18 Identity = 62/209 (29.67%), Postives = 99/209 (47.37%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFT-----DVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQE-LSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
+R T+ FP + + A+G PW TV+PF +G G +G P RCE C+AY N++ E W C+LCG ++ + ++RY + S+PE+T ++ E+PLD +E ARPV Y+A +D S E+ ++ L ++ L G+VT S ++GL D+ P+P V+ V
Sbjct: 3 VRATVSRFPIDSDAQEASGLPWGLTVTPFAAKDENGIGPACGSNGHLLP----------RCENCYAYFNTYCELDQWAWNCSLCGTLNGLPSDAIARYSNPH---SIPEMTSSFIDLEMPLDGS----------------EEEMTQARPV-YVAAIDISSSEEFLELTKSALLAALEALSPGALFGLVTFSHKIGLYDVQGPIPVVKNV 181
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: D8TML6_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TML6_VOLCA) HSP 1 Score: 94.4 bits (233), Expect = 2.570e-18 Identity = 64/209 (30.62%), Postives = 108/209 (51.67%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCG-HMSRFTQELSRYR-DRRTFRSLPELTQETVEF--ELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVEL 720
+ FTL+ FP + ++K +G P++C + P+ +G D G V +ARC +C++YIN + F + W C+LC H + Q+ RYR D + LPE+ E E E P+ + + L + PA PVV +A+VD + G E+ +++ L+ ++ LP R ++T+S+R+GL D+ + P V+ V L
Sbjct: 3 VDFTLKRFPINGSLKEQSGLPFSCVLQPYHRLGEK---DAAAGDATAVRSGAIARCAQCYSYINCYCVFDTAGWVCSLCNRHNALKPQQQKRYRLDPSILQVLPEVRSEVFETLAEEPIPVAMPPLEGSQAALHDPGSVSGPA---PVV-VALVDTAAGEEFLELVRSSLEAALEALPPVTRFALITMSNRLGLHDVRSSEPSVRYVPL 204
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A8J4EXZ9_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EXZ9_9CHLO) HSP 1 Score: 94.0 bits (232), Expect = 3.600e-18 Identity = 63/209 (30.14%), Postives = 106/209 (50.72%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCG-HMSRFTQELSRYR-DRRTFRSLPELTQETVEF--ELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVEL 720
+ FTL+ FP + +K +G P++C + P+ + G R + +ARC +C++YIN + F + W C+LC H + Q+ RYR D + LPE+ E E E P+ + ++ PA PVV +A+VD + G E+ +++ L+ ++ LP R ++T+S+R+GL D+ AP P V+ V L
Sbjct: 3 VDFTLKRFPINGRLKEHSGLPFSCVLQPYHRLPDKEAATGDASAAR---SNSIARCAQCYSYINCYCVFDTAGWVCSLCNRHNALKPQQQKRYRLDPTVLQELPEVRSEVFETLAEEPIPVPMPALEGSPAAQQDPGCVSGPA---PVV-VALVDTAAGEEFLELVRSSLEAALEALPPVTRFALITMSNRLGLHDVRAPEPSVRYVSL 204
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: UPI00053C92FF (protein transport protein SEC24-like isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C92FF) HSP 1 Score: 92.8 bits (229), Expect = 8.430e-18 Identity = 63/206 (30.58%), Postives = 96/206 (46.60%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFT--DVGGPAGGDGQRGPPRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQE-LSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLV 714
++ T+ FP A + A+G PW TV+PF D G G G + RCE C+AY NS+ E W C+LCG ++ + E ++RY +S PE+ ++ ELPLD +E ARPV Y+A +D S E+ ++ L ++ L G+ T S ++GL D+ P+P V+ V
Sbjct: 3 VQATVSRFPFDADAQEASGLPWGLTVTPFAAKDENGVGPAYGSNG-------HLLPRCENCYAYFNSYCELDQWAWNCSLCGTLNGLSSEAIARY---SLPQSSPEMISSFIDLELPLDGS----------------EEEMTQARPV-YVAAIDLSSSEEFLELTKSALLAALEALSPGALFGLATFSHKIGLYDVQGPIPVVKNV 181
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: A0A061RZK4_9CHLO (Sec23 sec24 transport family protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZK4_9CHLO) HSP 1 Score: 92.4 bits (228), Expect = 1.190e-17 Identity = 69/217 (31.80%), Postives = 103/217 (47.47%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGP---PRPVPIDRVARCEECFAYINSFSEFTSRFWKCALCGHMSRFTQELSRYRDRRTFRS-LPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARP--------VVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVEL 720
+ F+L FP S IK G P+ C V PF + P P +D VARC EC+AYIN + F W C+LCG+ + + + R + RS LPEL V E+ +KG ++ E +E AAA P VY+AVVD + G E+ +++ L ++ LP G+++ D++GL D+ +P V+ V L
Sbjct: 3 LSFSLRKFPVSGEIKGQCGLPFGCVVQPFAQF--------DKLPLDTPLRSNLDSVARCSECYAYINKYCLFERGGWVCSLCGNYNDYHRLFHNKYVRESTRSKLPELQDSIV--EIKCSAKGMLLE-----AEEAGDPEEKAAAIPDNVELVGRPVYVAVVDLACGEEFLELVKSSLLAALEALPPVALFGIISFCDKIGLHDVQGKVPIVKYVPL 204
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Match: G5DW79_SILLA (Sec23/sec24 transport family protein (Fragment) n=2 Tax=Silene latifolia TaxID=37657 RepID=G5DW79_SILLA) HSP 1 Score: 92.0 bits (227), Expect = 1.550e-17 Identity = 65/210 (30.95%), Postives = 101/210 (48.10%), Query Frame = 1
Query: 106 IRFTLEAFPHSAAIKNAAGAPWACTVSPFTDVGGPAGGDGQRGPPRPVPID--RVARCEECFAYINSFSEFTSRFWKCALCGHMSRF-TQELSRYRDRRTFRSLPELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPVVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVELGS 726
+R T FP + +AG PW T++PF+ G + G P + ID + RCE C+AY N++ E W C+LCG ++ T +++Y + S PE++ V+ ELPL+ E ARPV Y+A VD S E+ D++ L ++ LP G+ T S ++GL D+ P+P V+ V + S
Sbjct: 3 VRATANRFPIDQDEQESAGIPWGVTLTPFS-------GRDENGNPPAIGIDGESLPRCENCWAYFNTYCELDQWAWTCSLCGTLNGLSTHCIAKYSHPQ---SCPEMSSSFVDLELPLEGSDG----------------ESMQARPV-YVAAVDLSSSEEFIDLIKSALLAALEALPTGALFGLATFSLKLGLYDVQGPVPVVKNVFIPS 185 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig147.2755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig147.2755.1 >prot_E-siliculosus-1a_F_contig147.2755.1 ID=prot_E-siliculosus-1a_F_contig147.2755.1|Name=mRNA_E-siliculosus-1a_F_contig147.2755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=252bp SDVQTPAASRTPTASMSDAEESDSNIPYFFPDERPIRFTLEAFPHSAAIKback to top mRNA from alignment at E-siliculosus-1a_F_contig147:73090..76311+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig147.2755.1 ID=mRNA_E-siliculosus-1a_F_contig147.2755.1|Name=mRNA_E-siliculosus-1a_F_contig147.2755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3222bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:73090..76311+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig147:73090..76311+ >mRNA_E-siliculosus-1a_F_contig147.2755.1 ID=mRNA_E-siliculosus-1a_F_contig147.2755.1|Name=mRNA_E-siliculosus-1a_F_contig147.2755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:73090..76311+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |