mRNA_E-siliculosus-1a_F_contig1468.2742.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2742.1 vs. uniprot
Match: A0A6H5KSY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY5_9PHAE) HSP 1 Score: 597 bits (1539), Expect = 8.810e-194 Identity = 569/737 (77.20%), Postives = 579/737 (78.56%), Query Frame = 1
Query: 1423 IVRDMEAATAPELVQQGLDGGTSGVLNTVSDSATFPTEEMGALASSAGGLDSAAGSSAQIVVEEGGDRAGSVPEDVEYPTEETAPAAXXXXXTADAVLAEERPAAXXXXXXXXXXXXXXXAVDTVSGDGEKGGGWMSGLASSMGFGDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPA------GTTAAPVAAAPVP-------------------AMSPGLADRRKESIAAEMKSFLEDSDEEAAEAATATAAVTEDGQAAEDPGAVESETDGGAXXXXXXXXXXXXXXXXXXXXXXGQGAEESVALADDASKASDASGAVDGEASSSGDMKPPAVAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXXXKEEQEALRQKHATERQDTDLPLISAEMSRQQSVKGRAQMHQQAIAAIEGGDRGTGKAGSGTGRLGTDWTQRRESLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSARDGIAASGXXASASPSGAGSGEARGSVESLASTAAASSETTNXXXXXXXXXXXXXX----ADGTGGDAAGAAPSKGDVPPVLVDGGESAVAAVGDSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAXXXXXXXXXAPRTVAETSGATPVSTSSAEGGCCTIS 3546
+ RDMEAATAPELVQ+GLDGGTSGVLN VSDS+TFP EEMGALASSAGGLDSAAGS AQIVVEEGG RA SVPEDVEYPTEETAPAA TADAVLAEE PAA A +TVSGDGEK G WMSGLASSMGFGDGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+ GT AAAP AMSPGLAD+RK SIAAEMKSFLEDSDEEAAEA ATA VTED QAAE PGA E ETDGGA XXXXXXXXGQ AEE+VALAD ASKASDASGAVDGEASSSGDMKPPA+AERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXXXKEEQEALRQKHATERQDTDLPLISAEMSRQQSVKGRAQMHQQAIAAIEGGDRGTGKAGSG GRLGTDWTQRRE+LEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX XXXXXXXXXXXXXX AD T GD AGAAPSKGDVPPVLVDGGESAVAAVG+SGE XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXAPRTV ETS ATPVSTSSAEGGCCTIS
Sbjct: 1 MARDMEAATAPELVQEGLDGGTSGVLNPVSDSSTFPNEEMGALASSAGGLDSAAGSLAQIVVEEGGVRAASVPEDVEYPTEETAPAAAG---TADAVLAEEAPAAAAAVVPEPATA----ASNTVSGDGEKAGSWMSGLASSMGFGDGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEVLEVAVEPSAAADRDGTAVVAGAAAPXXXXXXXXXXXXXXXXXXXXXAMSPGLADKRKASIAAEMKSFLEDSDEEAAEATAATAPVTEDAQAAEAPGAAERETDGGAGEVSEQEREEGVAMXXXXXXXXGQVAEEAVALADGASKASDASGAVDGEASSSGDMKPPAIAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXXXKEEQEALRQKHATERQDTDLPLISAEMSRQQSVKGRAQMHQQAIAAIEGGDRGTGKAGSGRGRLGTDWTQRRETLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADRTEGDTAGAAPSKGDVPPVLVDGGESAVAAVGNSGEDEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRTVVETSEATPVSTSSAEGGCCTIS 730
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2742.1 vs. uniprot
Match: D7G4B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B7_ECTSI) HSP 1 Score: 553 bits (1424), Expect = 1.540e-179 Identity = 436/516 (84.50%), Postives = 442/516 (85.66%), Query Frame = 1
Query: 2020 PAGTTAAPVAAAPVPAMSPGLADRRKESIAAEMKSFLEDSDEEAAEAATATAAVTEDGQAAEDPGAVESETDGGAXXXXXXXXXXXXXXXXXXXXXXGQGAEESVALADDASKASDASGAVDGEASSSGDMKPPAVAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXXXKEEQEALRQKHATERQDTDLPLISAEMSRQQSVKGRAQMHQQAIAAIEGGDRGTGKAGSGTGRLGTDWTQRRESLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VSSARDGIAASGXXASASPSGAGSGEARGSVESLASTAAASS------ETTNXXXXXXXXXXXXXXADGTGGDAAGAAPSKGDVPPVLVDGGESAVAAVGDSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAXXXXXXXXXAPRTVAETSGATPVSTSSAEGGCCTIS 3546
PAGTTAAPVAAAPVPAMSPGLADRRKESIAAEMKSFLEDSDEEAA AAVTEDGQAAE PGAVE ETDGGA XXXXXXXXX GQGAEE+VALADDASKASDASG+VDGEASSSGDMKPPAVAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXX KEEQEALRQKHATERQDTD PLISAEMSRQQSVKGRAQMHQQAIAAIEGGDRGTGKAGSGTGRLGTDWTQRRE+LEKFVVKYDKPENASTAGTPSTGEGPTRYIPLP DGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VSSARDGIA G ASASPSG+ GEARGSVESL S + ETTN ADGTGGDAAGA PSKGDVPPVLV+GGESAVAAVGDSGE XXXXXXXXXXXXXXXXXXXXXXX TKA APRTVAETSGATPVSTSSAEGGCCTIS
Sbjct: 29 PAGTTAAPVAAAPVPAMSPGLADRRKESIAAEMKSFLEDSDEEAAXXXXXXAAVTEDGQAAEAPGAVERETDGGAGEGSGQEEGVAXXXXXXXXX--GQGAEEAVALADDASKASDASGSVDGEASSSGDMKPPAVAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXKLKEEQEALRQKHATERQDTDFPLISAEMSRQQSVKGRAQMHQQAIAAIEGGDRGTGKAGSGTGRLGTDWTQRRETLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPTDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSSARDGIAVPGGGASASPSGSWGGEARGSVESLGSASXXXXXXXXXXETTNGRASPTPAAREGGNADGTGGDAAGATPSKGDVPPVLVEGGESAVAAVGDSGEDENTXXXXXXXXXXXXXXXXXXXXXXXADTKASTSSAAAATAPRTVAETSGATPVSTSSAEGGCCTIS 542
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2742.1 vs. uniprot
Match: A0A6H5KRQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE) HSP 1 Score: 273 bits (698), Expect = 7.870e-79 Identity = 245/339 (72.27%), Postives = 252/339 (74.34%), Query Frame = 2
Query: 305 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEYLREDLAKHGLAVAGGAVPNRKAPGAAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPRPRGCLASLGQVDGRVSSAAADSTTAAGPLPNXXXXXXXXXXXXXDQAAGSADKPTPGKLSASRFGSFRNNNADSSSGGVAGSTGSALPTPXXXAPADVKVPPGNVDSCTKGSASSSARGDASQAPSAAASSVS-SRRWTVEPSSAPAPYTRKDQRQEQESAGGSASASVQGLTSRLGSAGLGPSAGVGGXXXXXXXXXXXKRSTSGRIAELTRKFEK 1318
MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEYLREDLAKHGLAVAGG VPNRKA GAAPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS PRPRGCLASLGQVDGRV+SAAADSTTAAGPLPN DQ GSAD+PTPGKLSASRFGSFRN+NADSS G VAG XXX SRR TVE SSAPAPYTR++Q QEQ+SAGGSAS SVQGLTSRLGSAGLGPSAG GG KR+TSGRIAELTRKFEK
Sbjct: 1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEYLREDLAKHGLAVAGGVVPNRKAQGAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPRPRGCLASLGQVDGRVASAAADSTTAAGPLPNPPSQQQQR-----DQTVGSADRPTPGKLSASRFGSFRNSNADSS-GAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRCTVESSSAPAPYTREEQGQEQKSAGGSASTSVQGLTSRLGSAGLGPSAGGGG-----------KRTTSGRIAELTRKFEK 322
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2742.1 vs. uniprot
Match: D7G4B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 4.250e-14 Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2
Query: 305 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEY 424
MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEY
Sbjct: 1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEY 40 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1468.2742.1 >prot_E-siliculosus-1a_F_contig1468.2742.1 ID=prot_E-siliculosus-1a_F_contig1468.2742.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2742.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=705bp MEAATAPELVQQGLDGGTSGVLNTVSDSATFPTEEMGALASSAGGLDSAAback to top mRNA from alignment at E-siliculosus-1a_F_contig1468:19040..29718+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1468.2742.1 ID=mRNA_E-siliculosus-1a_F_contig1468.2742.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2742.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10679bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1468:19040..29718+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1468:19040..29718+ >mRNA_E-siliculosus-1a_F_contig1468.2742.1 ID=mRNA_E-siliculosus-1a_F_contig1468.2742.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2742.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4230bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1468:19040..29718+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |