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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2741.1 vs. uniprot
Match: D7G4B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B9_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.200e-59 Identity = 134/212 (63.21%), Postives = 144/212 (67.92%), Query Frame = 1
Query: 289 MAAMRGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKTHKDSREKLELAHAKEIEDMTKEKEDAKKNEREALETAEKIXXXXXXXXXXXXXXXXXXXKKDIVDTKXEIXXXXXXXXXXXXXXXXTFAELENCTIEKEKIKTELGEARAAXXXXXXXXARGPANRRRVTAIGVRPISPVGGGAGPEGGGSQYAMDDGEHDNG 924
MAAMRGGRGGIED+L+GA +IS L KENK VKR+LASAVSENAR KTH+DSR+KLELAHAKEIEDMTK EDAKKNEREA+ETAEK TFAEL+NCTIEKEKIKTELG XXXXXXXX NRRRVTAIGVR ISPVGGGAGP+GGGSQYAM+DGE DNG
Sbjct: 1 MAAMRGGRGGIEDDLIGAVKEISKLSKENKTVKRDLASAVSENARLVKTHEDSRKKLELAHAKEIEDMTKAIEDAKKNEREAIETAEK-----------------------------------------------TFAELKNCTIEKEKIKTELGXXXXXXXXXXXXXXXXXXNRRRVTAIGVRQISPVGGGAGPKGGGSQYAMEDGEDDNG 165
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2741.1 vs. uniprot
Match: A0A6H5KZ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ20_9PHAE) HSP 1 Score: 114 bits (285), Expect = 2.160e-26 Identity = 115/216 (53.24%), Postives = 122/216 (56.48%), Query Frame = 1
Query: 289 MAAMRGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKT----HKDSREKLELAHAKEIEDMTKEKEDAKKNEREALETAEKIXXXXXXXXXXXXXXXXXXXKKDIVDTKXEIXXXXXXXXXXXXXXXXTFAELENCTIEKEKIKTELGEARAAXXXXXXXXARGPANRRRVTAIGVRPISPVGGGAGPEGGGSQYAMDDGEHDNG 924
MAAMRGGRGGIEDELVGA MQ+STLGKENK VKRELASA+SENAR K H++ REKLELAHAKEIED+ K X XXXXXXXXXXXXXXXX XXXXXXXX VTAIGVRPISPVGGGAGP+GGGSQYAM+DGE DNG
Sbjct: 1 MAAMRGGRGGIEDELVGAVMQMSTLGKENKTVKRELASALSENARLTKASAWAHEECREKLELAHAKEIEDLKK--------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAIGVRPISPVGGGAGPKGGGSQYAMNDGEEDNG 178
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 0 |
| Stop | 0 |
| Cds size | 924 |
| Model size | 926 |
| Exons | 4 |
| Ec32 ortholog | Ec-02_002110.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1468.2741.1 >prot_E-siliculosus-1a_F_contig1468.2741.1 ID=prot_E-siliculosus-1a_F_contig1468.2741.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2741.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=308bp
SWACLFLLYTAHSRPLSSCVSSLRTLSPVHTHVRVKEEITLGGEFYPPRA DRARSQLHCSPLAKNCFGKVHTFVSRKGGGENTERETKWPECDWSIMAAM RGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKTHKDSR EKLELAHAKEIEDMTKEKEDAKKNEREALETAEKIHEDGREKLELAHAKE IEDMKKDIVDTKKEIEDVKKSEREAIETAEKTFAELENCTIEKEKIKTEL GEARAALAEAAAATARGPANRRRVTAIGVRPISPVGGGAGPEGGGSQYAM DDGEHDNG back to topmRNA from alignment at E-siliculosus-1a_F_contig1468:14408..18904- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1468.2741.1 ID=mRNA_E-siliculosus-1a_F_contig1468.2741.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2741.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4497bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1468:14408..18904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) TCTTGGGCGTGCTTGTTTCTCTTGTACACAGCACACAGCAGACCGTTGTC
GTCGTGTGTATCGTCTCTCCGCACGCTCTCACCAGTTCACACACACGTAA
GAGTTAAGGAAGAGATTACCCTGGGAGGAGAGTTTTACCCACCAAGGGCA
GACAGAGCAAGAAGCCAACTTCACTGCTCGCCGCTGGCAAAGAACTGCTT
CGGGAAGGTACACACGTTTGTGTCAAGGAAAGGGGGAGGGGAGAATACAG
AGAGAGAAACGAAGTGGCCAGAGTGCGACTGGAGTATCATGGCAGCTATG
AGAGGCGGGAGAGGTGGGATTGAGGATGAGCTCGTCGGCGCCGCCATGCA
GATTTCGACCCTGGGCAAGGAGAATAAGAGGGTCAAGCGCGAACTCGCTT
CGGCTGTTAGCGAGAACGCCAGGTGAGAAGAGAATCATGACACGGACCTG
GGGTAGAGAGAGAGAGGCTATGTCCTACAGCAGTACAGCAGTTCGCCTAC
GACCCTGTTAGCGTACTAGTGCAAAGCCATGCCCGACAACAATGCCGCCG
CTTGAAATGTCGGGGTTCGCCGCTCAATGGATCCAACAACAATGTCTGTT
GCTTCTCTCACGCCGCGTGGCGTCACGTTGTCCACCGCGGTGCATAGCAG
TTCCCCAACCCAAATTCCCTCATCTATAACATGCTACCCAGGGAGATAAA
GCTGTAGACCCATAGACTATGCTGCTCGGGGAACCGTAGAGTCACAGGTT
GGTGGTTGTCGTCATGCTATGAACTCGTCGTCAATCCATCCCTGACTTCA
CCACGACCGTGGTGGATAGAGGTGAATCTGTTTTGTTTTTATAAACAGCA
GGCAAGACTTCAATCAACCGCTGGTGTACGCCGACTCTGCCACCGGAGTT
GATCCCTGTGGTACTGGTGTCATTTGTGACGCGTAGAACACACGGAGATT
TTCCGCCTTCGTGTCATCGATCTCGGTAGGCCCCAGGTCAGCCAAGCATA
TTCCGTCTACCGTAAGGTTGTGAGTCAGCGCACAGGGGTGCGATCGAATT
TCAAGGCGTAATTTCTCCACAACCAGGAGGTTGCGAGCGCCAACTGATAC
TTGTCAGGAAAGCTCTCGATGAGGTGTTTCCAAAACCGCGCTTTTTTGAC
AGTGGTAATCTCCTGCTTGTGGAGAAATTACGCTTTGAAAATAGCTCGCA
CCCCTGTGCGCTGACTCGCAACCTTACGGTACGTCGGCAGTACCCACACA
CCCCGTACAGGAAGACAGGAGCCAGTTCTGAAACATTGGCTTCGATTGTC
CCGAAAAAATATGAAAAATAGCTGCATGTATTGCATACATGTACTGCTGT
AGACACACCGCTGACCGATGGATCCTGCCCTAAAACCTGTTTAGCAACCT
GCTCTCGACGTGGGCGATGAACCATAAATATTAAGAGCCTCGACCCGAAT
TGACGTACAATACCCTGTCTCTGGGCGCCGACTGCTGTATCAGTATGATG
CAACAACTCAACGATGATAAAACGCCTACGCTGCCCAGTTTGGATGCACC
AAGCGCCGGCGGCGCGAAGTGCTGTTTTTTGTGGCTCCACCGTTTTCATT
TCCTGATTTGGCGGGAAGTTGCACTTGATCATTTCCTTACAGCCTTACCT
TGTTGTCCTCACGCTTTGGGGTCCTCAACAGCCAAATGTCTCTTGCGAAA
CATAGATACAGCAGTCTACATATTACCTCTTCGACTAGCCACTTAAATCG
GCTGTGTGTTTTCCAGCCCACCTTTCCTGCCCCGCCGTCACCTGCACTTC
GGTTTTCGTGCACCGGTTTTTGTATTCCCAGCGAAGTATTTGTACCTGTT
TCCGCAGTTGGAGAATTTTGCGAGGGTTCCACGGTTAACCGTTTGTGTGT
CAGAGCTAGCGACCGCCGCGTTTCCCTTGCTTGCTGGTTTCGATCACGGT
CTCACCACCTCGTTCGTCCTTTTGTCCAACGTTGTGCTCGTCCGTACGTC
CATCCCATATCCCAACCCTTCGGTCGGCGCTCGATTCGCCTCCACCAGGC
TCATGAAGGTGAGTGCTTGGGTACTGGTTTTAGTCAGCGTTCTGGTGCTC
ACGCTTGACGTTGTTCGTACCGTCTGAACCTCTCACATCGACTCTCGTTG
GTAGTTTTCGACGTTGCTTAGGCTCGAAAGACAGAAGTATTGCGTGAGGC
ACGGGCAGGTGGGCTGCTGTCGGTCGTTTCGAGGTGGTGGATGTACCCGT
TGCTTGTCGACACGGGGCCGTTCCGCGTCGCCCCAAGTCTTGACCATGGT
AGCGCCGGGCGTGCAGAGCGTTCTAGTCCTATCGCCAAGGCTCAGCGTTG
AATGGTGAAAATAAGTCTTCCCAAACTTGCTGCTTCTTGTTTTCGTCGTT
ATATCACATGTGAGACTGCTGTTCGGGCGTTGTTGATACCCGAAGACACG
CGTTGCGTGCCGTTTTCTCTCGCTGCGTAAGGCGCATTGTGGACTTATTT
TGTCTTGTTCACCTCCCGCCGCGTCTTGCACTCTTCCTTCTGTCGTTTCG
CGCCCAAAGACCCACAAAGACAGCCGCGAAAAGCTGGAGTTGGCCCACGC
GAAAGAGATAGAAGACATGACGAAAGAGAAAGAAGACGCGAAGAAGAACG
AACGGGAGGCACTCGAAACGGCCGAAAAGGTAGGGGCACCGTGCTCCAAT
ATATTGGGAGACGGGTGTGTGGGATGCGCATTTGGTGTTGTTGCTTTTTC
TTCGTTTTTGTTTACCTTCCGCAGCGTCTTGCGCCCTTTCGCCCATCGTG
TCGCGTCCAAAGATTCACGAAGACGGTCGGGAAAAGCTGGAGTTGGCCCA
CGCGAAAGAGATAGAAGACATGAAGAAAGATATAGTAGACACGAAGAAAG
AGATAGAAGACGTGAAGAAGAGCGAAAGAGAGGCGATCGAAACGGCCGAA
AAGGTGAGGGCACGGGAATTCAACATTGGGAGACGGGTGTGTGGGATGGT
CGTTACTGTATGGCGGGGGGGATGCATGTCAGGGTATCCCAAGAGGTGAA
AGGCGGGGTTCAAGCGAAATATCCTTGCGCTATATACATTGGGGGGAAGT
GTCCTAAATGGGGTGGAGGAGCGTATTGCACGCCCAAAAGAGCACAAAAG
TCAGTAGCTACTTTTGAATTTCGACGAAGCATCCTTGTTACTTTCCGTTG
CTTGTAATTGACCAAGCGAAGTAACTCTGCACGCAAGATTTTCGACGTAA
CAACCAGCTTCGGAGGAACCCACAGGTTTGAAGCATGCACCCTCAACCAA
CCCTTTGGGTGCCAGGGACGAAATATGCCTTATTTAGTTGTTTGGTGCCG
TTTTTTTTTGTTGGTCTTGCGGGTCTTTCGTCCCAAGATAAGCACATGGG
TCTTGCTCTTTTGGTTGAGCTTTGTGCTACAAAGCCCGATCTTACTGGTT
GGACAGCGAGTGATGCACGCGGTAGACCATGTGGGCATACCGGGGGCGTA
GTGGGGCTCGGAAACATTTTTTTTTTTTTCTCGGCCGACGGAATGTTCCA
TGTTTGAACGCGTTGGGTCGTTTAGATGGGACCCCTTTGACGCGCTGCAG
CCTTCTTGCTCTGTACGGGAGTACTGCTGTAGTGGAGGTGTGCTCTCTGC
CGAAGGGTTAACGTGAGCAGAAGCAGGTTTCTTCCCGGTTTGGTGTGGTT
TGGTGTGTTTGCTGGCTGAAATAGTGTATTTTGCTGTCCTTGTTGATTCA
CGCCACAACCTTTTGCGACCCCGCCGGGCTTTTTGTCTCTTGTCCTATTC
CTGCGCCTGTGTATCTGAGTGCGCCTCACTGTTTGCCCCATTTGTTTGGC
AACCCCGTGGGGTGTCCGCAGAACATTTATCGAACCGCAGTTTGATCCAT
GCCAAGTCAAGAAACACGCGAAACACCGCATGGTGTTCTACACGAAACAT
GTACAAACCATTATCGAGAATAGCGAGACAACTGTCTACAAATAGCGAGT
GCTTTCACTCCAAAGAGAGACGAGGACGACCTTCGCCTCCTTGCCTTGTG
GTTTATTTTTGGAAAGGTCGCTCTCCTCTACCTCTGAAAACGTGTCAGGG
TGTTCATTTCCAACGACGACGTTGACGCACCCCCCCGGGAGACGTCCTCC
CAGGGCATTTCGGTATCTCTCTCCTGGTATGCTAAAAATATGTGCTCTTG
TGTGGCTGGGTGATTAATTGCGCTCCCGTTGCTCGTGGTTTTCTGTTCGC
CGCCATCACCTACAAGACTTTCGCGGAGCTGGAGAATTGCACAATCGAGA
AGGAGAAGATCAAGACAGAGCTGGGGGAGGCAAGGGCGGCGCTGGCGGAG
GCAGCGGCAGCGACTGCACGGGGCCCCGCCAACAGGCGTAGGGTCACCGC
CATCGGAGTTCGTCCGATTTCTCCCGTCGGGGGGGGCGCGGGGCCAGAAG
GAGGAGGGTCTCAGTATGCAATGGACGACGGGGAGCATGATAACGGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1468:14408..18904- >mRNA_E-siliculosus-1a_F_contig1468.2741.1 ID=mRNA_E-siliculosus-1a_F_contig1468.2741.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2741.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1468:14408..18904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) TCTTGGGCGTGCTTGTTTCTCTTGTACACAGCACACAGCAGACCGTTGTC GTCGTGTGTATCGTCTCTCCGCACGCTCTCACCAGTTCACACACACGTAA GAGTTAAGGAAGAGATTACCCTGGGAGGAGAGTTTTACCCACCAAGGGCA GACAGAGCAAGAAGCCAACTTCACTGCTCGCCGCTGGCAAAGAACTGCTT CGGGAAGGTACACACGTTTGTGTCAAGGAAAGGGGGAGGGGAGAATACAG AGAGAGAAACGAAGTGGCCAGAGTGCGACTGGAGTATCATGGCAGCTATG AGAGGCGGGAGAGGTGGGATTGAGGATGAGCTCGTCGGCGCCGCCATGCA GATTTCGACCCTGGGCAAGGAGAATAAGAGGGTCAAGCGCGAACTCGCTT CGGCTGTTAGCGAGAACGCCAGGTCTTGGGCGTGCTTGTTTCTCTTGTAC ACAGCACACAGCAGACCGTTGTCGTCGTGTGTATCGTCTCTCCGCACGCT CTCACCAGTTCACACACACGTAAGAGTTAAGGAAGAGATTACCCTGGGAG GAGAGTTTTACCCACCAAGGGCAGACAGAGCAAGAAGCCAACTTCACTGC TCGCCGCTGGCAAAGAACTGCTTCGGGAAGGTACACACGTTTGTGTCAAG GAAAGGGGGAGGGGAGAATACAGAGAGAGAAACGAAGTGGCCAGAGTGCG ACTGGAGTATCATGGCAGCTATGAGAGGCGGGAGAGGTGGGATTGAGGAT GAGCTCGTCGGCGCCGCCATGCAGATTTCGACCCTGGGCAAGGAGAATAA GAGGGTCAAGCGCGAACTCGCTTCGGCTGTTAGCGAGAACGCCAGGCGCC CAAAGACCCACAAAGACAGCCGCGAAAAGCTGGAGTTGGCCCACGCGAAA GAGATAGAAGACATGACGAAAGAGAAAGAAGACGCGAAGAAGAACGAACG GGAGGCACTCGAAACGGCCGAAAAGCGCCCAAAGACCCACAAAGACAGCC GCGAAAAGCTGGAGTTGGCCCACGCGAAAGAGATAGAAGACATGACGAAA GAGAAAGAAGACGCGAAGAAGAACGAACGGGAGGCACTCGAAACGGCCGA AAAGATTCACGAAGACGGTCGGGAAAAGCTGGAGTTGGCCCACGCGAAAG AGATAGAAGACATGAAGAAAGATATAGTAGACACGAAGAAAGAGATAGAA GACGTGAAGAAGAGCGAAAGAGAGGCGATCGAAACGGCCGAAAAGATTCA CGAAGACGGTCGGGAAAAGCTGGAGTTGGCCCACGCGAAAGAGATAGAAG ACATGAAGAAAGATATAGTAGACACGAAGAAAGAGATAGAAGACGTGAAG AAGAGCGAAAGAGAGGCGATCGAAACGGCCGAAAAGACTTTCGCGGAGCT GGAGAATTGCACAATCGAGAAGGAGAAGATCAAGACAGAGCTGGGGGAGG CAAGGGCGGCGCTGGCGGAGGCAGCGGCAGCGACTGCACGGGGCCCCGCC AACAGGCGTAGGGTCACCGCCATCGGAGTTCGTCCGATTTCTCCCGTCGG GGGGGGCGCGGGGCCAGAAGGAGGAGGGTCTCAGTATGCAATGGACGACG GGGAGCATGATAACGGAACTTTCGCGGAGCTGGAGAATTGCACAATCGAG AAGGAGAAGATCAAGACAGAGCTGGGGGAGGCAAGGGCGGCGCTGGCGGA GGCAGCGGCAGCGACTGCACGGGGCCCCGCCAACAGGCGTAGGGTCACCG CCATCGGAGTTCGTCCGATTTCTCCCGTCGGGGGGGGCGCGGGGCCAGAA GGAGGAGGGTCTCAGTATGCAATGGACGACGGGGAGCATGATAACGGA back to top
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