mRNA_E-siliculosus-1a_F_contig1468.2741.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1468.2741.1
Unique NamemRNA_E-siliculosus-1a_F_contig1468.2741.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2741.1 vs. uniprot
Match: D7G4B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B9_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.200e-59
Identity = 134/212 (63.21%), Postives = 144/212 (67.92%), Query Frame = 1
Query:  289 MAAMRGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKTHKDSREKLELAHAKEIEDMTKEKEDAKKNEREALETAEKIXXXXXXXXXXXXXXXXXXXKKDIVDTKXEIXXXXXXXXXXXXXXXXTFAELENCTIEKEKIKTELGEARAAXXXXXXXXARGPANRRRVTAIGVRPISPVGGGAGPEGGGSQYAMDDGEHDNG 924
            MAAMRGGRGGIED+L+GA  +IS L KENK VKR+LASAVSENAR  KTH+DSR+KLELAHAKEIEDMTK  EDAKKNEREA+ETAEK                                               TFAEL+NCTIEKEKIKTELG     XXXXXXXX     NRRRVTAIGVR ISPVGGGAGP+GGGSQYAM+DGE DNG
Sbjct:    1 MAAMRGGRGGIEDDLIGAVKEISKLSKENKTVKRDLASAVSENARLVKTHEDSRKKLELAHAKEIEDMTKAIEDAKKNEREAIETAEK-----------------------------------------------TFAELKNCTIEKEKIKTELGXXXXXXXXXXXXXXXXXXNRRRVTAIGVRQISPVGGGAGPKGGGSQYAMEDGEDDNG 165          
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2741.1 vs. uniprot
Match: A0A6H5KZ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ20_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.160e-26
Identity = 115/216 (53.24%), Postives = 122/216 (56.48%), Query Frame = 1
Query:  289 MAAMRGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKT----HKDSREKLELAHAKEIEDMTKEKEDAKKNEREALETAEKIXXXXXXXXXXXXXXXXXXXKKDIVDTKXEIXXXXXXXXXXXXXXXXTFAELENCTIEKEKIKTELGEARAAXXXXXXXXARGPANRRRVTAIGVRPISPVGGGAGPEGGGSQYAMDDGEHDNG 924
            MAAMRGGRGGIEDELVGA MQ+STLGKENK VKRELASA+SENAR  K     H++ REKLELAHAKEIED+ K                                              X  XXXXXXXXXXXXXXXX                         XXXXXXXX         VTAIGVRPISPVGGGAGP+GGGSQYAM+DGE DNG
Sbjct:    1 MAAMRGGRGGIEDELVGAVMQMSTLGKENKTVKRELASALSENARLTKASAWAHEECREKLELAHAKEIEDLKK--------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAIGVRPISPVGGGAGPKGGGSQYAMNDGEEDNG 178          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1468.2741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B9_ECTSI1.200e-5963.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ20_9PHAE2.160e-2653.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1468contigE-siliculosus-1a_F_contig1468:14408..18904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size924
Model size926
Exons4
Ec32 orthologEc-02_002110.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1468.2741.1prot_E-siliculosus-1a_F_contig1468.2741.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1468 14408..18904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927977.8699846-CDS-E-siliculosus-1a_F_contig1468:14407..146381622927977.8699846-CDS-E-siliculosus-1a_F_contig1468:14407..14638Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 14408..14638 -
1696318760.7691278-CDS-E-siliculosus-1a_F_contig1468:14407..146381696318760.7691278-CDS-E-siliculosus-1a_F_contig1468:14407..14638Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 14408..14638 -
1622927977.8829408-CDS-E-siliculosus-1a_F_contig1468:15951..160921622927977.8829408-CDS-E-siliculosus-1a_F_contig1468:15951..16092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 15952..16092 -
1696318760.7765164-CDS-E-siliculosus-1a_F_contig1468:15951..160921696318760.7765164-CDS-E-siliculosus-1a_F_contig1468:15951..16092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 15952..16092 -
1622927977.8953078-CDS-E-siliculosus-1a_F_contig1468:16225..163541622927977.8953078-CDS-E-siliculosus-1a_F_contig1468:16225..16354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 16226..16354 -
1696318760.7840705-CDS-E-siliculosus-1a_F_contig1468:16225..163541696318760.7840705-CDS-E-siliculosus-1a_F_contig1468:16225..16354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 16226..16354 -
1622927977.9120972-CDS-E-siliculosus-1a_F_contig1468:18481..189041622927977.9120972-CDS-E-siliculosus-1a_F_contig1468:18481..18904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 18482..18904 -
1696318760.7933578-CDS-E-siliculosus-1a_F_contig1468:18481..189041696318760.7933578-CDS-E-siliculosus-1a_F_contig1468:18481..18904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1468 18482..18904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1468.2741.1

>prot_E-siliculosus-1a_F_contig1468.2741.1 ID=prot_E-siliculosus-1a_F_contig1468.2741.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2741.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=308bp
SWACLFLLYTAHSRPLSSCVSSLRTLSPVHTHVRVKEEITLGGEFYPPRA
DRARSQLHCSPLAKNCFGKVHTFVSRKGGGENTERETKWPECDWSIMAAM
RGGRGGIEDELVGAAMQISTLGKENKRVKRELASAVSENARRPKTHKDSR
EKLELAHAKEIEDMTKEKEDAKKNEREALETAEKIHEDGREKLELAHAKE
IEDMKKDIVDTKKEIEDVKKSEREAIETAEKTFAELENCTIEKEKIKTEL
GEARAALAEAAAATARGPANRRRVTAIGVRPISPVGGGAGPEGGGSQYAM
DDGEHDNG
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mRNA from alignment at E-siliculosus-1a_F_contig1468:14408..18904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1468.2741.1 ID=mRNA_E-siliculosus-1a_F_contig1468.2741.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2741.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4497bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1468:14408..18904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCTTGGGCGTGCTTGTTTCTCTTGTACACAGCACACAGCAGACCGTTGTC GTCGTGTGTATCGTCTCTCCGCACGCTCTCACCAGTTCACACACACGTAA GAGTTAAGGAAGAGATTACCCTGGGAGGAGAGTTTTACCCACCAAGGGCA GACAGAGCAAGAAGCCAACTTCACTGCTCGCCGCTGGCAAAGAACTGCTT CGGGAAGGTACACACGTTTGTGTCAAGGAAAGGGGGAGGGGAGAATACAG AGAGAGAAACGAAGTGGCCAGAGTGCGACTGGAGTATCATGGCAGCTATG AGAGGCGGGAGAGGTGGGATTGAGGATGAGCTCGTCGGCGCCGCCATGCA GATTTCGACCCTGGGCAAGGAGAATAAGAGGGTCAAGCGCGAACTCGCTT CGGCTGTTAGCGAGAACGCCAGGTGAGAAGAGAATCATGACACGGACCTG GGGTAGAGAGAGAGAGGCTATGTCCTACAGCAGTACAGCAGTTCGCCTAC GACCCTGTTAGCGTACTAGTGCAAAGCCATGCCCGACAACAATGCCGCCG CTTGAAATGTCGGGGTTCGCCGCTCAATGGATCCAACAACAATGTCTGTT GCTTCTCTCACGCCGCGTGGCGTCACGTTGTCCACCGCGGTGCATAGCAG TTCCCCAACCCAAATTCCCTCATCTATAACATGCTACCCAGGGAGATAAA GCTGTAGACCCATAGACTATGCTGCTCGGGGAACCGTAGAGTCACAGGTT GGTGGTTGTCGTCATGCTATGAACTCGTCGTCAATCCATCCCTGACTTCA CCACGACCGTGGTGGATAGAGGTGAATCTGTTTTGTTTTTATAAACAGCA GGCAAGACTTCAATCAACCGCTGGTGTACGCCGACTCTGCCACCGGAGTT GATCCCTGTGGTACTGGTGTCATTTGTGACGCGTAGAACACACGGAGATT TTCCGCCTTCGTGTCATCGATCTCGGTAGGCCCCAGGTCAGCCAAGCATA TTCCGTCTACCGTAAGGTTGTGAGTCAGCGCACAGGGGTGCGATCGAATT TCAAGGCGTAATTTCTCCACAACCAGGAGGTTGCGAGCGCCAACTGATAC TTGTCAGGAAAGCTCTCGATGAGGTGTTTCCAAAACCGCGCTTTTTTGAC AGTGGTAATCTCCTGCTTGTGGAGAAATTACGCTTTGAAAATAGCTCGCA CCCCTGTGCGCTGACTCGCAACCTTACGGTACGTCGGCAGTACCCACACA CCCCGTACAGGAAGACAGGAGCCAGTTCTGAAACATTGGCTTCGATTGTC CCGAAAAAATATGAAAAATAGCTGCATGTATTGCATACATGTACTGCTGT AGACACACCGCTGACCGATGGATCCTGCCCTAAAACCTGTTTAGCAACCT GCTCTCGACGTGGGCGATGAACCATAAATATTAAGAGCCTCGACCCGAAT TGACGTACAATACCCTGTCTCTGGGCGCCGACTGCTGTATCAGTATGATG CAACAACTCAACGATGATAAAACGCCTACGCTGCCCAGTTTGGATGCACC AAGCGCCGGCGGCGCGAAGTGCTGTTTTTTGTGGCTCCACCGTTTTCATT TCCTGATTTGGCGGGAAGTTGCACTTGATCATTTCCTTACAGCCTTACCT TGTTGTCCTCACGCTTTGGGGTCCTCAACAGCCAAATGTCTCTTGCGAAA CATAGATACAGCAGTCTACATATTACCTCTTCGACTAGCCACTTAAATCG GCTGTGTGTTTTCCAGCCCACCTTTCCTGCCCCGCCGTCACCTGCACTTC GGTTTTCGTGCACCGGTTTTTGTATTCCCAGCGAAGTATTTGTACCTGTT TCCGCAGTTGGAGAATTTTGCGAGGGTTCCACGGTTAACCGTTTGTGTGT CAGAGCTAGCGACCGCCGCGTTTCCCTTGCTTGCTGGTTTCGATCACGGT CTCACCACCTCGTTCGTCCTTTTGTCCAACGTTGTGCTCGTCCGTACGTC CATCCCATATCCCAACCCTTCGGTCGGCGCTCGATTCGCCTCCACCAGGC TCATGAAGGTGAGTGCTTGGGTACTGGTTTTAGTCAGCGTTCTGGTGCTC ACGCTTGACGTTGTTCGTACCGTCTGAACCTCTCACATCGACTCTCGTTG GTAGTTTTCGACGTTGCTTAGGCTCGAAAGACAGAAGTATTGCGTGAGGC ACGGGCAGGTGGGCTGCTGTCGGTCGTTTCGAGGTGGTGGATGTACCCGT TGCTTGTCGACACGGGGCCGTTCCGCGTCGCCCCAAGTCTTGACCATGGT AGCGCCGGGCGTGCAGAGCGTTCTAGTCCTATCGCCAAGGCTCAGCGTTG AATGGTGAAAATAAGTCTTCCCAAACTTGCTGCTTCTTGTTTTCGTCGTT ATATCACATGTGAGACTGCTGTTCGGGCGTTGTTGATACCCGAAGACACG CGTTGCGTGCCGTTTTCTCTCGCTGCGTAAGGCGCATTGTGGACTTATTT TGTCTTGTTCACCTCCCGCCGCGTCTTGCACTCTTCCTTCTGTCGTTTCG CGCCCAAAGACCCACAAAGACAGCCGCGAAAAGCTGGAGTTGGCCCACGC GAAAGAGATAGAAGACATGACGAAAGAGAAAGAAGACGCGAAGAAGAACG AACGGGAGGCACTCGAAACGGCCGAAAAGGTAGGGGCACCGTGCTCCAAT ATATTGGGAGACGGGTGTGTGGGATGCGCATTTGGTGTTGTTGCTTTTTC TTCGTTTTTGTTTACCTTCCGCAGCGTCTTGCGCCCTTTCGCCCATCGTG TCGCGTCCAAAGATTCACGAAGACGGTCGGGAAAAGCTGGAGTTGGCCCA CGCGAAAGAGATAGAAGACATGAAGAAAGATATAGTAGACACGAAGAAAG AGATAGAAGACGTGAAGAAGAGCGAAAGAGAGGCGATCGAAACGGCCGAA AAGGTGAGGGCACGGGAATTCAACATTGGGAGACGGGTGTGTGGGATGGT CGTTACTGTATGGCGGGGGGGATGCATGTCAGGGTATCCCAAGAGGTGAA AGGCGGGGTTCAAGCGAAATATCCTTGCGCTATATACATTGGGGGGAAGT GTCCTAAATGGGGTGGAGGAGCGTATTGCACGCCCAAAAGAGCACAAAAG TCAGTAGCTACTTTTGAATTTCGACGAAGCATCCTTGTTACTTTCCGTTG CTTGTAATTGACCAAGCGAAGTAACTCTGCACGCAAGATTTTCGACGTAA CAACCAGCTTCGGAGGAACCCACAGGTTTGAAGCATGCACCCTCAACCAA CCCTTTGGGTGCCAGGGACGAAATATGCCTTATTTAGTTGTTTGGTGCCG TTTTTTTTTGTTGGTCTTGCGGGTCTTTCGTCCCAAGATAAGCACATGGG TCTTGCTCTTTTGGTTGAGCTTTGTGCTACAAAGCCCGATCTTACTGGTT GGACAGCGAGTGATGCACGCGGTAGACCATGTGGGCATACCGGGGGCGTA GTGGGGCTCGGAAACATTTTTTTTTTTTTCTCGGCCGACGGAATGTTCCA TGTTTGAACGCGTTGGGTCGTTTAGATGGGACCCCTTTGACGCGCTGCAG CCTTCTTGCTCTGTACGGGAGTACTGCTGTAGTGGAGGTGTGCTCTCTGC CGAAGGGTTAACGTGAGCAGAAGCAGGTTTCTTCCCGGTTTGGTGTGGTT TGGTGTGTTTGCTGGCTGAAATAGTGTATTTTGCTGTCCTTGTTGATTCA CGCCACAACCTTTTGCGACCCCGCCGGGCTTTTTGTCTCTTGTCCTATTC CTGCGCCTGTGTATCTGAGTGCGCCTCACTGTTTGCCCCATTTGTTTGGC AACCCCGTGGGGTGTCCGCAGAACATTTATCGAACCGCAGTTTGATCCAT GCCAAGTCAAGAAACACGCGAAACACCGCATGGTGTTCTACACGAAACAT GTACAAACCATTATCGAGAATAGCGAGACAACTGTCTACAAATAGCGAGT GCTTTCACTCCAAAGAGAGACGAGGACGACCTTCGCCTCCTTGCCTTGTG GTTTATTTTTGGAAAGGTCGCTCTCCTCTACCTCTGAAAACGTGTCAGGG TGTTCATTTCCAACGACGACGTTGACGCACCCCCCCGGGAGACGTCCTCC CAGGGCATTTCGGTATCTCTCTCCTGGTATGCTAAAAATATGTGCTCTTG TGTGGCTGGGTGATTAATTGCGCTCCCGTTGCTCGTGGTTTTCTGTTCGC CGCCATCACCTACAAGACTTTCGCGGAGCTGGAGAATTGCACAATCGAGA AGGAGAAGATCAAGACAGAGCTGGGGGAGGCAAGGGCGGCGCTGGCGGAG GCAGCGGCAGCGACTGCACGGGGCCCCGCCAACAGGCGTAGGGTCACCGC CATCGGAGTTCGTCCGATTTCTCCCGTCGGGGGGGGCGCGGGGCCAGAAG GAGGAGGGTCTCAGTATGCAATGGACGACGGGGAGCATGATAACGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1468:14408..18904-

>mRNA_E-siliculosus-1a_F_contig1468.2741.1 ID=mRNA_E-siliculosus-1a_F_contig1468.2741.1|Name=mRNA_E-siliculosus-1a_F_contig1468.2741.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1468:14408..18904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCTTGGGCGTGCTTGTTTCTCTTGTACACAGCACACAGCAGACCGTTGTC
GTCGTGTGTATCGTCTCTCCGCACGCTCTCACCAGTTCACACACACGTAA
GAGTTAAGGAAGAGATTACCCTGGGAGGAGAGTTTTACCCACCAAGGGCA
GACAGAGCAAGAAGCCAACTTCACTGCTCGCCGCTGGCAAAGAACTGCTT
CGGGAAGGTACACACGTTTGTGTCAAGGAAAGGGGGAGGGGAGAATACAG
AGAGAGAAACGAAGTGGCCAGAGTGCGACTGGAGTATCATGGCAGCTATG
AGAGGCGGGAGAGGTGGGATTGAGGATGAGCTCGTCGGCGCCGCCATGCA
GATTTCGACCCTGGGCAAGGAGAATAAGAGGGTCAAGCGCGAACTCGCTT
CGGCTGTTAGCGAGAACGCCAGGTCTTGGGCGTGCTTGTTTCTCTTGTAC
ACAGCACACAGCAGACCGTTGTCGTCGTGTGTATCGTCTCTCCGCACGCT
CTCACCAGTTCACACACACGTAAGAGTTAAGGAAGAGATTACCCTGGGAG
GAGAGTTTTACCCACCAAGGGCAGACAGAGCAAGAAGCCAACTTCACTGC
TCGCCGCTGGCAAAGAACTGCTTCGGGAAGGTACACACGTTTGTGTCAAG
GAAAGGGGGAGGGGAGAATACAGAGAGAGAAACGAAGTGGCCAGAGTGCG
ACTGGAGTATCATGGCAGCTATGAGAGGCGGGAGAGGTGGGATTGAGGAT
GAGCTCGTCGGCGCCGCCATGCAGATTTCGACCCTGGGCAAGGAGAATAA
GAGGGTCAAGCGCGAACTCGCTTCGGCTGTTAGCGAGAACGCCAGGCGCC
CAAAGACCCACAAAGACAGCCGCGAAAAGCTGGAGTTGGCCCACGCGAAA
GAGATAGAAGACATGACGAAAGAGAAAGAAGACGCGAAGAAGAACGAACG
GGAGGCACTCGAAACGGCCGAAAAGCGCCCAAAGACCCACAAAGACAGCC
GCGAAAAGCTGGAGTTGGCCCACGCGAAAGAGATAGAAGACATGACGAAA
GAGAAAGAAGACGCGAAGAAGAACGAACGGGAGGCACTCGAAACGGCCGA
AAAGATTCACGAAGACGGTCGGGAAAAGCTGGAGTTGGCCCACGCGAAAG
AGATAGAAGACATGAAGAAAGATATAGTAGACACGAAGAAAGAGATAGAA
GACGTGAAGAAGAGCGAAAGAGAGGCGATCGAAACGGCCGAAAAGATTCA
CGAAGACGGTCGGGAAAAGCTGGAGTTGGCCCACGCGAAAGAGATAGAAG
ACATGAAGAAAGATATAGTAGACACGAAGAAAGAGATAGAAGACGTGAAG
AAGAGCGAAAGAGAGGCGATCGAAACGGCCGAAAAGACTTTCGCGGAGCT
GGAGAATTGCACAATCGAGAAGGAGAAGATCAAGACAGAGCTGGGGGAGG
CAAGGGCGGCGCTGGCGGAGGCAGCGGCAGCGACTGCACGGGGCCCCGCC
AACAGGCGTAGGGTCACCGCCATCGGAGTTCGTCCGATTTCTCCCGTCGG
GGGGGGCGCGGGGCCAGAAGGAGGAGGGTCTCAGTATGCAATGGACGACG
GGGAGCATGATAACGGAACTTTCGCGGAGCTGGAGAATTGCACAATCGAG
AAGGAGAAGATCAAGACAGAGCTGGGGGAGGCAAGGGCGGCGCTGGCGGA
GGCAGCGGCAGCGACTGCACGGGGCCCCGCCAACAGGCGTAGGGTCACCG
CCATCGGAGTTCGTCCGATTTCTCCCGTCGGGGGGGGCGCGGGGCCAGAA
GGAGGAGGGTCTCAGTATGCAATGGACGACGGGGAGCATGATAACGGA
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