mRNA_E-siliculosus-1a_F_contig1467.2738.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1467.2738.1
Unique NamemRNA_E-siliculosus-1a_F_contig1467.2738.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1467.2738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1467contigE-siliculosus-1a_F_contig1467:1553..2232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size333
Model size614
Exons3
Ec32 orthologEc-26_005180.1
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1467.2738.1prot_E-siliculosus-1a_F_contig1467.2738.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1467 1680..2026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.977261-UTR-E-siliculosus-1a_F_contig1467:1552..16791622927975.977261-UTR-E-siliculosus-1a_F_contig1467:1552..1679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1467 1553..1679 +
1696318760.646821-UTR-E-siliculosus-1a_F_contig1467:1552..16791696318760.646821-UTR-E-siliculosus-1a_F_contig1467:1552..1679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1467 1553..1679 +
1622927977.593575-UTR-E-siliculosus-1a_F_contig1467:2026..21151622927977.593575-UTR-E-siliculosus-1a_F_contig1467:2026..2115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1467 2027..2115 +
1696318760.6759424-UTR-E-siliculosus-1a_F_contig1467:2026..21151696318760.6759424-UTR-E-siliculosus-1a_F_contig1467:2026..2115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1467 2027..2115 +
1622927977.6117346-UTR-E-siliculosus-1a_F_contig1467:2167..22321622927977.6117346-UTR-E-siliculosus-1a_F_contig1467:2167..2232Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1467 2168..2232 +
1696318760.6868806-UTR-E-siliculosus-1a_F_contig1467:2167..22321696318760.6868806-UTR-E-siliculosus-1a_F_contig1467:2167..2232Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1467 2168..2232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927977.5612404-CDS-E-siliculosus-1a_F_contig1467:1679..19151622927977.5612404-CDS-E-siliculosus-1a_F_contig1467:1679..1915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1467 1680..1915 +
1696318760.6562476-CDS-E-siliculosus-1a_F_contig1467:1679..19151696318760.6562476-CDS-E-siliculosus-1a_F_contig1467:1679..1915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1467 1680..1915 +
1622927977.5792992-CDS-E-siliculosus-1a_F_contig1467:1929..20261622927977.5792992-CDS-E-siliculosus-1a_F_contig1467:1929..2026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1467 1930..2026 +
1696318760.666031-CDS-E-siliculosus-1a_F_contig1467:1929..20261696318760.666031-CDS-E-siliculosus-1a_F_contig1467:1929..2026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1467 1930..2026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1467.2738.1

>prot_E-siliculosus-1a_F_contig1467.2738.1 ID=prot_E-siliculosus-1a_F_contig1467.2738.1|Name=mRNA_E-siliculosus-1a_F_contig1467.2738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp
MALKRPWEKKESQSRLNGGVSASCVFAWAKARRHLSYSREKASRRSLWWQ
RRCSDGASNSRRRPCWRHHRHVPVNVFARVGHCRSTSGFRKLKATSPHES
HTCLYCMPVP*
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mRNA from alignment at E-siliculosus-1a_F_contig1467:1553..2232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1467.2738.1 ID=mRNA_E-siliculosus-1a_F_contig1467.2738.1|Name=mRNA_E-siliculosus-1a_F_contig1467.2738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=680bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1467:1553..2232+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGAAAAGGCGAGGTGGTGGAGGGAGGCCACTCACCAGAGGGTGAC
ACTCGTTGGCACACTCATGGGAGAGAAACGGATGCGGGGTGGGGTGGTGC
AAGGGTCACTGGCACTGGTTGCACTTGATGGCACTCAAGAGGCCATGGGA
GAAAAAGGAGTCGCAGTCGAGACTTAACGGGGGGGTGTCTGCGTCGTGTG
TGTTCGCATGGGCAAAAGCAAGGCGCCATTTGTCGTACTCGAGAGAAAAG
GCAAGCCGTCGCTCTTTGTGGTGGCAGCGACGCTGCTCGGATGGGGCAAG
CAATAGTCGGCGACGTCCGTGTTGGAGGCATCACAGGCACGTTCCTGTTA
ATGTTTTCGCTCGGTGTTCGTATTTAGTGTGGGCCACTGCCGTTCGACGT
CTGGGTTTCGAAAATTAAAAGCGACAAGCCCACACGAAAGTCACACATGT
CTTTACTGCATGCCCGTCCCTTGATGTTTGTGCCAAGCGCTTTGTTTCGT
CCCGTGAACGAAGGAGTATTATAGGCTTGCTTGCGGTCGGTTTTTTCACT
TTCACAGGAGGATGTATGTGTGGGTGGGTATGGGCCGTAGGATTCCTCCC
CGCACCACACAAGAGAGGTTCGTGGAAGAGCGATGACCGTGCGCCTGTTG
TTGGACGTGTGTGGCCTCAGTTGTGTGCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1467:1553..2232+

>mRNA_E-siliculosus-1a_F_contig1467.2738.1 ID=mRNA_E-siliculosus-1a_F_contig1467.2738.1|Name=mRNA_E-siliculosus-1a_F_contig1467.2738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1467:1553..2232+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCACTCAAGAGGCCATGGGAGAAAAAGGAGTCGCAGTCGAGACTTAA
CGGGGGGGTGTCTGCGTCGTGTGTGTTCGCATGGGCAAAAGCAAGGCGCC
ATTTGTCGTACTCGAGAGAAAAGGCAAGCCGTCGCTCTTTGTGGTGGCAG
CGACGCTGCTCGGATGGGGCAAGCAATAGTCGGCGACGTCCGTGTTGGAG
GCATCACAGGCACGTTCCTGTTAATGTTTTCGCTCGATGGCACTCAAGAG
GCCATGGGAGAAAAAGGAGTCGCAGTCGAGACTTAACGGGGGGGTGTCTG
CGTCGTGTGTGTTCGCATGGGCAAAAGCAAGGCGCCATTTGTCGTACTCG
AGAGAAAAGGCAAGCCGTCGCTCTTTGTGGTGGCAGCGACGCTGCTCGGA
TGGGGCAAGCAATAGTCGGCGACGTCCGTGTTGGAGGCATCACAGGCACG
TTCCTGTTAATGTTTTCGCTCGTGTGGGCCACTGCCGTTCGACGTCTGGG
TTTCGAAAATTAAAAGCGACAAGCCCACACGAAAGTCACACATGTCTTTA
CTGCATGCCCGTCCCTTGATGTGGGCCACTGCCGTTCGACGTCTGGGTTT
CGAAAATTAAAAGCGACAAGCCCACACGAAAGTCACACATGTCTTTACTG
CATGCCCGTCCCTTGA
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