mRNA_E-siliculosus-1a_F_contig14664.2737.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14664.2737.1
Unique NamemRNA_E-siliculosus-1a_F_contig14664.2737.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14664.2737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14664contigE-siliculosus-1a_F_contig14664:357..1009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size318
Model size635
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14664.2737.1prot_E-siliculosus-1a_F_contig14664.2737.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14664 561..896 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.729213-UTR-E-siliculosus-1a_F_contig14664:356..5601622927975.729213-UTR-E-siliculosus-1a_F_contig14664:356..560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14664 357..560 +
1696318760.609603-UTR-E-siliculosus-1a_F_contig14664:356..5601696318760.609603-UTR-E-siliculosus-1a_F_contig14664:356..560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14664 357..560 +
1622927975.913035-UTR-E-siliculosus-1a_F_contig14664:896..10091622927975.913035-UTR-E-siliculosus-1a_F_contig14664:896..1009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14664 897..1009 +
1696318760.6370099-UTR-E-siliculosus-1a_F_contig14664:896..10091696318760.6370099-UTR-E-siliculosus-1a_F_contig14664:896..1009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14664 897..1009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.8366985-CDS-E-siliculosus-1a_F_contig14664:560..6661622927975.8366985-CDS-E-siliculosus-1a_F_contig14664:560..666Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14664 561..666 +
1696318760.618363-CDS-E-siliculosus-1a_F_contig14664:560..6661696318760.618363-CDS-E-siliculosus-1a_F_contig14664:560..666Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14664 561..666 +
1622927975.8946037-CDS-E-siliculosus-1a_F_contig14664:684..8961622927975.8946037-CDS-E-siliculosus-1a_F_contig14664:684..896Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14664 685..896 +
1696318760.6278057-CDS-E-siliculosus-1a_F_contig14664:684..8961696318760.6278057-CDS-E-siliculosus-1a_F_contig14664:684..896Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14664 685..896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14664.2737.1

>prot_E-siliculosus-1a_F_contig14664.2737.1 ID=prot_E-siliculosus-1a_F_contig14664.2737.1|Name=mRNA_E-siliculosus-1a_F_contig14664.2737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
MGLGAKWAEGVAPTPAVTIKVTAVGESRVPAMLGQWREREREREREKGVG
EVTMAWKGVMVLSAKKQRYAVRTWKHGGLNLTHYSPRMVCNGWGSLSCVL
LLAVG*
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mRNA from alignment at E-siliculosus-1a_F_contig14664:357..1009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14664.2737.1 ID=mRNA_E-siliculosus-1a_F_contig14664.2737.1|Name=mRNA_E-siliculosus-1a_F_contig14664.2737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=653bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14664:357..1009+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCAATTAATTATACCCATGCGTTCGTGAACACAAAACGTGATGGTCGA
CGGGGTTGAGTGTGCTGGTCCGCCCAAAATCAGACGCGTCCTCTGTTTGA
TTTTTACGGCGGAAGGCAGTAGTAGAGCCGTTGGCAAGCTGTGGTCGTTG
TTTCGGCAGGAGGCGACGGCGGGCCTCTCGCTCTTGCGGTTGCGGATATA
GTTAATGGGTTTGGGTGCCAAATGGGCAGAGGGTGTGGCGCCAACGCCAG
CTGTCACCATTAAGGTCACAGCGGTGGGAGAATCGCGTGTGCCTGCCATG
CTTGGACAATGTTTCAGCAGCCTGAGAGGGAGAGAAAGAGAGAGAGAGAG
AGAGAGAGAGAAGGGGGTCGGGGAGGTTACCATGGCTTGGAAGGGGGTGA
TGGTGCTTTCGGCGAAGAAGCAAAGATATGCCGTGAGGACTTGGAAGCAT
GGTGGTTTGAACCTGACACACTATTCACCGAGGATGGTTTGCAACGGTTG
GGGTTCTCTTTCATGTGTGTTGTTGTTGGCGGTGGGGTGATGGCGTACAT
CATATACATAAGGAACATAAGGAAGAAGGAAGAACTCCCATGTTTCGCTG
CATGAGTTGTCGACTATGTAGACCTACACCTTTAGCTGCACTCTGGGAAA
TGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14664:357..1009+

>mRNA_E-siliculosus-1a_F_contig14664.2737.1 ID=mRNA_E-siliculosus-1a_F_contig14664.2737.1|Name=mRNA_E-siliculosus-1a_F_contig14664.2737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14664:357..1009+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGTTTGGGTGCCAAATGGGCAGAGGGTGTGGCGCCAACGCCAGCTGT
CACCATTAAGGTCACAGCGGTGGGAGAATCGCGTGTGCCTGCCATGCTTG
GACAATATGGGTTTGGGTGCCAAATGGGCAGAGGGTGTGGCGCCAACGCC
AGCTGTCACCATTAAGGTCACAGCGGTGGGAGAATCGCGTGTGCCTGCCA
TGCTTGGACAATGGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGG
GTCGGGGAGGTTACCATGGCTTGGAAGGGGGTGATGGTGCTTTCGGCGAA
GAAGCAAAGATATGCCGTGAGGACTTGGAAGCATGGTGGTTTGAACCTGA
CACACTATTCACCGAGGATGGTTTGCAACGGTTGGGGTTCTCTTTCATGT
GTGTTGTTGTTGGCGGTGGGGTGAGGAGAGAAAGAGAGAGAGAGAGAGAG
AGAGAGAAGGGGGTCGGGGAGGTTACCATGGCTTGGAAGGGGGTGATGGT
GCTTTCGGCGAAGAAGCAAAGATATGCCGTGAGGACTTGGAAGCATGGTG
GTTTGAACCTGACACACTATTCACCGAGGATGGTTTGCAACGGTTGGGGT
TCTCTTTCATGTGTGTTGTTGTTGGCGGTGGGGTGA
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