mRNA_E-siliculosus-1a_F_contig14662.2735.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14662.2735.1
Unique NamemRNA_E-siliculosus-1a_F_contig14662.2735.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14662.2735.1 vs. uniprot
Match: A0A6H5JTZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.210e-8
Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 GSVREGGARKAAHAPRRAGAMAPTQSSAIREQQTQQTRKRVSGASGAQPSAGGVAG 171
            GSV +GGAR +       GAMAPTQSSAIR  QT Q RKRV GASGAQ S GGVAG
Sbjct:  500 GSVGDGGARASGQ-----GAMAPTQSSAIRVNQTLQVRKRVGGASGAQTSTGGVAG 550
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BLAST of mRNA_E-siliculosus-1a_F_contig14662.2735.1 vs. uniprot
Match: D8LEP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP5_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.730e-7
Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 GSVREGGARKAAHAPRRAGAMAPTQSSAIREQQTQQTRKRVSGASGAQPSAGGVAG 171
            GSV +GGAR +       GAMAPTQSSAIR  QT Q RKRV GASGAQ S GGVAG
Sbjct:  649 GSVGDGGARASGQ-----GAMAPTQSSAIRVNQTLQGRKRVGGASGAQTSTGGVAG 699
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14662.2735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTZ7_9PHAE9.210e-867.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP5_ECTSI1.730e-767.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14662contigE-siliculosus-1a_F_contig14662:2..172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size171
Model size171
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.5154881-CDS-E-siliculosus-1a_F_contig14662:1..1721622927975.5154881-CDS-E-siliculosus-1a_F_contig14662:1..172Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14662 2..172 +
1696318760.5760713-CDS-E-siliculosus-1a_F_contig14662:1..1721696318760.5760713-CDS-E-siliculosus-1a_F_contig14662:1..172Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14662 2..172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14662.2735.1prot_E-siliculosus-1a_F_contig14662.2735.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14662 2..172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14662.2735.1

>prot_E-siliculosus-1a_F_contig14662.2735.1 ID=prot_E-siliculosus-1a_F_contig14662.2735.1|Name=mRNA_E-siliculosus-1a_F_contig14662.2735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
QGSVREGGARKAAHAPRRAGAMAPTQSSAIREQQTQQTRKRVSGASGAQP
SAGGVAG
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mRNA from alignment at E-siliculosus-1a_F_contig14662:2..172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14662.2735.1 ID=mRNA_E-siliculosus-1a_F_contig14662.2735.1|Name=mRNA_E-siliculosus-1a_F_contig14662.2735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14662:2..172+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGGATCCGTTCGAGAGGGCGGGGCACGGAAAGCGGCACACGCTCCGAG
GCGAGCAGGGGCTATGGCACCGACGCAGTCGTCGGCCATAAGGGAGCAAC
AGACCCAGCAAACTCGCAAAAGGGTGAGCGGCGCTAGCGGGGCCCAACCA
AGCGCCGGAGGGGTTGCTGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14662:2..172+

>mRNA_E-siliculosus-1a_F_contig14662.2735.1 ID=mRNA_E-siliculosus-1a_F_contig14662.2735.1|Name=mRNA_E-siliculosus-1a_F_contig14662.2735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14662:2..172+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGGATCCGTTCGAGAGGGCGGGGCACGGAAAGCGGCACACGCTCCGAG
GCGAGCAGGGGCTATGGCACCGACGCAGTCGTCGGCCATAAGGGAGCAAC
AGACCCAGCAAACTCGCAAAAGGGTGAGCGGCGCTAGCGGGGCCCAACCA
AGCGCCGGAGGGGTTGCTGGGCAAGGATCCGTTCGAGAGGGCGGGGCACG
GAAAGCGGCACACGCTCCGAGGCGAGCAGGGGCTATGGCACCGACGCAGT
CGTCGGCCATAAGGGAGCAACAGACCCAGCAAACTCGCAAAAGGGTGAGC
GGCGCTAGCGGGGCCCAACCAAGCGCCGGAGGGGTTGCTGGG
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