mRNA_E-siliculosus-1a_F_contig1466.2733.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: D8LEZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ5_ECTSI) HSP 1 Score: 573 bits (1478), Expect = 5.470e-205 Identity = 292/298 (97.99%), Postives = 294/298 (98.66%), Query Frame = 1
Query: 247 MTTAAEVDKVPVAAAKDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPESLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRRAL 1140
MTTAAEVDKVPVAAAKDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSA A+GLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPESLLRTLQ VVRTKGW+ALFIGLNAALARAFPANAALFLGYEIVRRAL
Sbjct: 1 MTTAAEVDKVPVAAAKDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSANAEAKGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPESLLRTLQTVVRTKGWQALFIGLNAALARAFPANAALFLGYEIVRRAL 298
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A836CAY2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY2_9STRA) HSP 1 Score: 265 bits (678), Expect = 7.740e-84 Identity = 143/283 (50.53%), Postives = 184/283 (65.02%), Query Frame = 1
Query: 295 DVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDK-PESLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRRAL 1140
+ +SIFGS AC+YTGQPLDTIKVR+QA P+AFSG QCLR T+++E + SLWKG+TPAL GAV+EN+VAF +N++LK ++P D +A QP+ +G VTG T V +CP DVIK +VQV R GTAA P NA M ++RT+G+RG + GL AQ ARD F++ FFG Y+ +V++ EV Y AGG+AGV GW MP D +KS +Q T P SL + +V G RALF G+ RAFPANAALFLGYE+ +R L
Sbjct: 10 EAAASIFGSFACIYTGQPLDTIKVRIQATPEAFSGAMQCLRTTISQEGVASLWKGATPALSGAVVENIVAFAINKELKLLWPPSDRHAAV--QPVAYGAVTGAVTAVALCPFDVIKCRVQVAR----------GTAARRAP--NAVEMAQLMVRTEGMRGFYRGLRAQVARDALFFSMFFGVYDVLVEQAMRRT-SFPREVAYIGAGGLAGVAGWLLSMPFDVLKSRMQVTPHGPRSLSAVARPLVAAGGPRALFAGVTVTCVRAFPANAALFLGYEVAKRNL 277
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A4D9CU68_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU68_9STRA) HSP 1 Score: 243 bits (619), Expect = 9.800e-75 Identity = 148/304 (48.68%), Postives = 178/304 (58.55%), Query Frame = 1
Query: 280 VAAAKDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDG-----------SSAPWWQ-----PILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITP-EVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPESLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRRAL 1140
V AAKDV+SSI GSA EE + +LWKGS PAL GAV EN VAF VN+QLKR+ D +G S A + P L GG TG+FT+ +CPSDVIK KVQV R+M K G ++A M H+L+TQGV+GLFVGLGAQFARD+PFYA FFGTYE + KA Y P E Y +AGG+AGV GWAAVMP+D KSIIQT+ P+SL+ T+ V +T+G AL+ GL A+ RAFPANAALFLGYE+ R L
Sbjct: 36 VHAAKDVLSSIVGSAI----------------------------------EEGLRALWKGSVPALVGAVSENAVAFSVNQQLKRILADLEGYGLGNESNQESSKAEAKEESLVVPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAMLK----------TGETAMDAQEMLVHVLKTQGVKGLFVGLGAQFARDIPFYAFFFGTYELSLVALKA--YTTMPQEGAYLVAGGLAGVAGWAAVMPIDMAKSIIQTSPNPKSLIPTMMDVAQTRGPMALYSGLGVAVFRAFPANAALFLGYELAREIL 293
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A7S2S5V7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V7_9STRA) HSP 1 Score: 234 bits (597), Expect = 2.300e-71 Identity = 127/290 (43.79%), Postives = 175/290 (60.34%), Query Frame = 1
Query: 292 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFP----DKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPESLLR---TLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRRAL 1140
KDV +S+ G+ AC YTGQP DT+KVR+QARPD ++G Q +T E + +LWKGS + G ++EN AFGVNEQLKRVFP D DG + +QP + G +TG + +CPS+++K++ Q+ + K + A T+ + L + R QG+ GL+ G+ AQ ARD FYA FFG+YE +V R + E +F++GG+AG++GW VMP+D KSIIQ + + V RT+G LF G AL R+FPANAALFLGYE+ RR L
Sbjct: 17 KDVAASVVGAVACCYTGQPFDTVKVRLQARPDEYTGMMQTFYKTAEAEGVAALWKGSVAVVTGMIMENAAAFGVNEQLKRVFPQSAQDLDGGAQGLFQPFMLGALTGSLVSFALCPSEIVKTRTQLEVANAKTSGLKAPTSMDILK---------KVWRLQGMAGLYTGIDAQIARDGLFYAVFFGSYEILV-RAFRKHTSLPDEANFFISGGLAGMLGWGFVMPVDVPKSIIQGDWRARPVGDFGGAFSEVFRTRGLSGLFSGSFPALVRSFPANAALFLGYELTRRGL 296
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A7S2URT5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URT5_9STRA) HSP 1 Score: 216 bits (550), Expect = 2.110e-64 Identity = 123/290 (42.41%), Postives = 161/290 (55.52%), Query Frame = 1
Query: 292 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPD----KDGSSAP-WWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQT---TDKPESLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRRA 1137
+DV S+ GS C YTGQPLDTIKVRMQ P ++G Q +T+ EE + +LWKG+ P G LEN VAFGVNE LKR FPD K+ P +P L G +TG + +V+ PS+VIK+K QV G++ +L +++ QGVR LF G AQ RD PFYA FFG YE + + E+ +FL+GG+AG+ GW MP D K+ +Q T S + + R +G L+ GL L RAFPANAALFLG E+ +RA
Sbjct: 12 RDVFSATLGSVCCCYTGQPLDTIKVRMQTNPHLYTGVIQTFSKTVGEEGVAALWKGAVPTAVGMALENAVAFGVNEALKRAFPDDPAAKNADERPDLLKPFLMGSITGCCSAIVLLPSEVIKAKTQV----------EIGSSLSSKDILQ------KMIKKQGVRSLFCGFDAQLMRDAPFYAVFFGGYELSCYLFRTHVPSMPEELNFFLSGGLAGMFGWTVAMPFDVPKTNVQARYDTKVFGSYFPEMIKIARERGVVGLYSGLGPTLVRAFPANAALFLGVEMGKRA 285
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A7S2L363_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L363_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.570e-63 Identity = 121/288 (42.01%), Postives = 165/288 (57.29%), Query Frame = 1
Query: 292 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDK---DGSSAP-WWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPE---SLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRR 1134
+D+ S+ GS AC YTGQP DT+KVRMQ P AF + ++ E I +LWKG+ P G V EN +AFGVNE LKR FPD+ D + P +P L G +TG + V+ PS+V+K+K QV V T A + +++ QG+R LF+G AQ RD+PFYA FFGTYE + + E+ +FL+GG AG++GWAA MP D K+ +Q + + S L +VR +G AL+ GL +ARAFPANAALFLG E+ ++
Sbjct: 16 RDIFSASIGSVACCYTGQPFDTVKVRMQTSPAAFPSVLFTSKSIVSNEGIPALWKGAVPTALGMVAENAMAFGVNEALKRTFPDEAKSDPTKRPDLMRPFLMGAITGCCSATVLLPSEVVKAKTQV---------VVGNTGASSADIYK------KMMKRQGIRSLFIGFDAQIMRDMPFYAFFFGTYELNCYLFRTFVPSMPEELNFFLSGGFAGMLGWAAAMPFDVPKTNVQASWDSKVVGSYFPELIRIVRERGVLALYTGLIPTIARAFPANAALFLGVEMGKK 288
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: B8C9S7_THAPS (Mitochondrial carrier (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9S7_THAPS) HSP 1 Score: 209 bits (532), Expect = 6.200e-62 Identity = 119/280 (42.50%), Postives = 157/280 (56.07%), Query Frame = 1
Query: 292 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPE---SLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYE 1122
+D+ S+ GS AC YTGQP DT+KVRMQ P F + L E + +LWKG+ P G VLEN +AFGVNE LKR FPD P +P L G +TG + V+ PS+++K+K QV G ++T + ++R G+R LFVG AQ RD PFYA FFGTYE + + E+ YFL+GG AG++GW A MP D K+ +Q + + + S L +VR +G AL+ GL +ARAFPANAALFLG E
Sbjct: 4 RDIFSASIGSVACCYTGQPFDTVKVRMQTNPSLFPSVAFTTKSILKNEGMGALWKGAVPTAMGMVLENAMAFGVNEALKRTFPD-GSKEDPTQRPDL-GAITGCCSATVLLPSEIVKAKTQV---------------VVGNVSASSTEIYKKMIRQSGIRSLFVGFDAQIMRDAPFYAFFFGTYELNCYLFRTYVPSMPEELNYFLSGGFAGMLGWTAAMPFDVPKTNVQASWESKVVGSYFPELLRIVRERGVLALYTGLVPTIARAFPANAALFLGVE 266
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A7S1ZAT6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAT6_TRICV) HSP 1 Score: 209 bits (531), Expect = 7.100e-61 Identity = 116/290 (40.00%), Postives = 166/290 (57.24%), Query Frame = 1
Query: 292 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKD-GSSAP-----WWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQT---TDKPESLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRR 1134
+D+ S+ GS C YTGQP DT+KVRMQ PD + G +Q +++T A E + + WKG+ P G LEN +AFGVNE LKR FPD + G+ P +P L G +TG + V+ PS+V+K+K QV KG +++ + +++ QG++ +F G AQ RD PFYA FFG+Y+ + K + E+ +F++GG AG++GW A MP D K+ +Q+ T S L + R +G L+ GL LARAFPANAALFLG E+ +R
Sbjct: 65 RDIFSATLGSVFCCYTGQPFDTVKVRMQTNPDIYGGIYQTIKKT-ASEGVPAFWKGAVPTAMGMALENAMAFGVNEALKRAFPDPNLGAMDPEKPPDLLRPFLMGTITGCCSACVLLPSEVVKAKTQVLVGTGKG--------------MSSNDVFKQMMKKQGIKSIFCGFEAQLMRDGPFYAFFFGSYDMLCYLFKIYVPSMPDELRFFMSGGFAGMLGWTAAMPFDVPKTNVQSRWDTKVVGSYFPELIKIGRERGILGLYNGLGPTLARAFPANAALFLGVEMGKR 339
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A7S4T4E9_9STRA (Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S4T4E9_9STRA) HSP 1 Score: 202 bits (513), Expect = 7.950e-59 Identity = 115/293 (39.25%), Postives = 160/293 (54.61%), Query Frame = 1
Query: 292 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDK-----DGSSAP----WWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQT---TDKPESLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRR 1134
+D+ S+ GS C YTGQP DT+KVRMQ P+ +S ++ T+ EE I + WKG+ P G EN +AFGVNE LKR FPD D + A +P L G +TG + +V+ PS+V+K+K QV + GT + ++R QG + LF GL AQ RD PFYA FFG+YE + + E+ YF++GG+AG++GW A MP D K+ +Q+ T S + + + +G L+ GL L RAFPANAALFLG E+ +R
Sbjct: 12 RDIFSATVGSIFCCYTGQPFDTVKVRMQTNPELYSSIYKTATTTMGEEGIKAFWKGAVPTAMGMAAENAMAFGVNEALKRAFPDPNKDQFDHNGAQRRPDLLRPFLMGAITGCCSALVLLPSEVVKAKTQV----------AVGTDVSSNDIFK------KMVRKQGYKSLFCGLDAQLMRDGPFYAFFFGSYEMSCFLFRTYVPSMPEELNYFISGGLAGMLGWTAAMPFDVPKTNVQSRYDTQIVGSYFPQMIQITKERGILGLYNGLGPTLVRAFPANAALFLGVEMGKR 288
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Match: A0A7S2NZN3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZN3_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.370e-58 Identity = 113/289 (39.10%), Postives = 162/289 (56.06%), Query Frame = 1
Query: 292 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPD----KDGSSAP-WWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVAVSAGTAAEGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQT---TDKPESLLRTLQMVVRTKGWRALFIGLNAALARAFPANAALFLGYEIVRR 1134
+D+ S+ G+ C Y GQPLDT+KVRMQ P +SG + E T+LWKG+ P G EN +AFGVNE LKR FP+ KD + P +P G +TG + +V+ PS+V+K+K+QV + GT ++A + +L+ QG++ +F GL +Q ARD FYA FFG YE + + E+ +F++GG+AG+ GWA MP D K+ +Q+ T S L + +VR +G L+ GL L RAFPANAALFLG E+ ++
Sbjct: 12 RDIFSATIGAITCAYVGQPLDTVKVRMQTMPKVYSGIGTSFAHIVRNEGATALWKGAVPTTLGMTAENAMAFGVNEALKRAFPEDKSSKDVNGPPNMIRPFQMGAITGCCSALVLLPSEVVKAKIQV----------AVGT-------VSARDIMKQMLKEQGIKSMFCGLDSQLARDASFYAVFFGGYELSCYLFRTYVPSMPEELNFFISGGLAGMFGWACAMPFDVPKTNVQSRYDTKVVGSYLPEMGRIVRKRGILGLYDGLGPVLIRAFPANAALFLGVEMGKK 283 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1466.2733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1466.2733.1 >prot_E-siliculosus-1a_F_contig1466.2733.1 ID=prot_E-siliculosus-1a_F_contig1466.2733.1|Name=mRNA_E-siliculosus-1a_F_contig1466.2733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=299bp MTTAAEVDKVPVAAAKDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSback to top mRNA from alignment at E-siliculosus-1a_F_contig1466:23980..25809- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1466.2733.1 ID=mRNA_E-siliculosus-1a_F_contig1466.2733.1|Name=mRNA_E-siliculosus-1a_F_contig1466.2733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1830bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1466:23980..25809- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1466:23980..25809- >mRNA_E-siliculosus-1a_F_contig1466.2733.1 ID=mRNA_E-siliculosus-1a_F_contig1466.2733.1|Name=mRNA_E-siliculosus-1a_F_contig1466.2733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1794bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1466:23980..25809- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |