mRNA_E-siliculosus-1a_F_contig1457.2674.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1457.2674.1
Unique NamemRNA_E-siliculosus-1a_F_contig1457.2674.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1457.2674.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 6.870e-23
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:  226 HFDIHKLRPSGFRFFICCLEVTNLASGCLRPRSPNGGSGGSADSSPEDPGPMPGPMPELEP 408
            HF I KLRPSGFRFFICCLEVTNLASGCLRPRSP+GGSGGSADSSPEDPGPM      LEP
Sbjct:  125 HFHIDKLRPSGFRFFICCLEVTNLASGCLRPRSPSGGSGGSADSSPEDPGPMXXXXXXLEP 185
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BLAST of mRNA_E-siliculosus-1a_F_contig1457.2674.1 vs. uniprot
Match: A0A6H5KFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.950e-19
Identity = 48/64 (75.00%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:  226 HFDIHKLRPSGFRFFICCLEVTNLASGCLRPRSPNGGSGGSADSS---PEDPGPMPGPMPELEP 408
            HFDIHKLRPSGFRFFICCLEVTNLASGCLRPR P+             PEDPGPMPGPM ELEP
Sbjct: 1404 HFDIHKLRPSGFRFFICCLEVTNLASGCLRPRGPSXXXXXXXXXXXXXPEDPGPMPGPMAELEP 1467
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1457.2674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK75_ECTSI6.870e-2385.25Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFW4_9PHAE2.950e-1975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1457contigE-siliculosus-1a_F_contig1457:29952..30360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size408
Model size410
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01002,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.19.12
EggNOG OGsCOG5077@1,KOG1866@2759
EggNOG free text desc.ubiquitinyl hydrolase activity
KEGG koko:K11840,ko:K11853,ko:K11869
Seed eggNOG ortholog2880.D7FK75
Seed ortholog evalue8.8e-21
Seed ortholog score106.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927965.4358258-CDS-E-siliculosus-1a_F_contig1457:29951..303591622927965.4358258-CDS-E-siliculosus-1a_F_contig1457:29951..30359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1457 29952..30359 +
1696318756.335597-CDS-E-siliculosus-1a_F_contig1457:29951..303591696318756.335597-CDS-E-siliculosus-1a_F_contig1457:29951..30359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1457 29952..30359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1457.2674.1prot_E-siliculosus-1a_F_contig1457.2674.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1457 29952..30359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1457.2674.1

>prot_E-siliculosus-1a_F_contig1457.2674.1 ID=prot_E-siliculosus-1a_F_contig1457.2674.1|Name=mRNA_E-siliculosus-1a_F_contig1457.2674.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
ATPDLVAVDGEATGGGIRDRGGSTTPTPDNGSSNSAAAAASASDDARRPT
SAQSPAEEEEEARRQRTTHRRQQQQHFDIHKLRPSGFRFFICCLEVTNLA
SGCLRPRSPNGGSGGSADSSPEDPGPMPGPMPELEP
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mRNA from alignment at E-siliculosus-1a_F_contig1457:29952..30360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1457.2674.1 ID=mRNA_E-siliculosus-1a_F_contig1457.2674.1|Name=mRNA_E-siliculosus-1a_F_contig1457.2674.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=409bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1457:29952..30360+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAACCCCGGATCTCGTGGCCGTCGATGGTGAGGCCACAGGCGGCGGAAT
ACGCGATCGGGGTGGGTCAACAACACCAACACCCGACAACGGCAGCAGCA
ATAGCGCCGCAGCCGCCGCCTCGGCGAGCGACGACGCGCGTCGTCCCACC
TCTGCCCAATCACCAGCGGAGGAGGAGGAGGAGGCCAGACGGCAGCGCAC
GACGCACCGGCGGCAGCAGCAGCAGCACTTCGACATCCACAAGCTGCGCC
CGTCCGGGTTCCGGTTCTTCATCTGCTGCCTCGAGGTCACCAACCTCGCC
AGCGGATGTCTACGTCCCCGTAGCCCTAACGGTGGCAGCGGCGGCAGCGC
TGACTCTAGCCCCGAAGACCCAGGGCCGATGCCGGGGCCAATGCCGGAAC
TCGAGCCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1457:29952..30360+

>mRNA_E-siliculosus-1a_F_contig1457.2674.1 ID=mRNA_E-siliculosus-1a_F_contig1457.2674.1|Name=mRNA_E-siliculosus-1a_F_contig1457.2674.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1457:29952..30360+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAACCCCGGATCTCGTGGCCGTCGATGGTGAGGCCACAGGCGGCGGAAT
ACGCGATCGGGGTGGGTCAACAACACCAACACCCGACAACGGCAGCAGCA
ATAGCGCCGCAGCCGCCGCCTCGGCGAGCGACGACGCGCGTCGTCCCACC
TCTGCCCAATCACCAGCGGAGGAGGAGGAGGAGGCCAGACGGCAGCGCAC
GACGCACCGGCGGCAGCAGCAGCAGCACTTCGACATCCACAAGCTGCGCC
CGTCCGGGTTCCGGTTCTTCATCTGCTGCCTCGAGGTCACCAACCTCGCC
AGCGGATGTCTACGTCCCCGTAGCCCTAACGGTGGCAGCGGCGGCAGCGC
TGACTCTAGCCCCGAAGACCCAGGGCCGATGCCGGGGCCAATGCCGGAAC
TCGAGCCGGCAACCCCGGATCTCGTGGCCGTCGATGGTGAGGCCACAGGC
GGCGGAATACGCGATCGGGGTGGGTCAACAACACCAACACCCGACAACGG
CAGCAGCAATAGCGCCGCAGCCGCCGCCTCGGCGAGCGACGACGCGCGTC
GTCCCACCTCTGCCCAATCACCAGCGGAGGAGGAGGAGGAGGCCAGACGG
CAGCGCACGACGCACCGGCGGCAGCAGCAGCAGCACTTCGACATCCACAA
GCTGCGCCCGTCCGGGTTCCGGTTCTTCATCTGCTGCCTCGAGGTCACCA
ACCTCGCCAGCGGATGTCTACGTCCCCGTAGCCCTAACGGTGGCAGCGGC
GGCAGCGCTGACTCTAGCCCCGAAGACCCAGGGCCGATGCCGGGGCCAAT
GCCGGAACTCGAGCCG
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