mRNA_E-siliculosus-1a_F_contig1456.2671.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI) HSP 1 Score: 739 bits (1907), Expect = 1.480e-258 Identity = 426/486 (87.65%), Postives = 432/486 (88.89%), Query Frame = 1
Query: 1 LSSQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEANTENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMNSRRPRAKAANLADVRKGADRERRGGGRGGGGEKSGTLRERNERADNDKALRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEKPPTPPLEVDEEDLIGRRARENVRAFLREDADPEPRREAYSYEAALKXXXXXXXXXXXXXERQGGPEEGMRWAGGDTRKDLSLQDNDXXXXXXXY-PPWSGRLNPNANPEERLEXXXXXXXXXXXXXXXGGDLGDDGPLARTGSEF 1455
+ QVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGY+FFRHLCEQHE TENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQA+VYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMN RERNERADNDKALR+ALVWAAGALAKIQEIIEPAA RRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEKPPTPPLEVDEEDLIGRRARENVRAFLREDAD EPRREAYSYEAALK XXXXXXXXXXXX RQGGPEEGMRWAGGDTRKDLSLQDN XXXXXXX PPWSGR+NPNANPEERLE XXXXXXXXX GGDLGDDGPLARTGS+F
Sbjct: 379 IRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYVFFRHLCEQHEVGTENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQANVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMNP-----------------------------------SRERNERADNDKALREALVWAAGALAKIQEIIEPAAARRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEKPPTPPLEVDEEDLIGRRARENVRAFLREDADQEPRREAYSYEAALKEXXXXXXXXXXXXXRQGGPEEGMRWAGGDTRKDLSLQDNXXXXXXXXXXPPWSGRINPNANPEERLEEXXXXXXXXX-----GGDLGDDGPLARTGSDF 824
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: A0A6H5JCZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ4_9PHAE) HSP 1 Score: 651 bits (1679), Expect = 3.790e-228 Identity = 362/434 (83.41%), Postives = 374/434 (86.18%), Query Frame = 1
Query: 157 RHLCEQHEANTENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMNS-RRPRAKAANLADVRKGADRERRGGGRGGGGEKSGTLRERNERADNDKALRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEKPPTPPLEVDEEDLIGRRARENVRAFLREDADPEPRREAYSYEAALKXXXXXXXXXXXXXERQGGPEEGMRWAGGDTRKDLSLQDNDXXXXXXXYPPWSGRLNPNANPEERLEXXXXXXXXXXXXXXXGGDLGDDGPLARTGSEF 1455
R +C + +TENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENY SLVHVRERLKEFIR+MNS RRPRAKAANLADVRKGADR RRG KS TLRERNE A+N+K LRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQ QMSADPDRPLTPAEWGRLEDEKPPTPP+EVDE+DLIGRRAR+NVRAFLREDAD EPRREAYSYEAALK XXX ERQGG EEGMRWAG DTRKDLSLQD+D P WSGRLNP ANPEERLE GDLGDDGPLA+TGS+
Sbjct: 10 RSVCHVVQVDTENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYTSLVHVRERLKEFIRKMNSSRRPRAKAANLADVRKGADRGRRGXXXX-XXXKSDTLRERNECANNEKTLRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQVQMSADPDRPLTPAEWGRLEDEKPPTPPVEVDEKDLIGRRARDNVRAFLREDADREPRREAYSYEAALKEEEXXXARERMRRERQGGAEEGMRWAGEDTRKDLSLQDDDDDDS----PMWSGRLNPKANPEERLEEEGGREAEEER-----GDLGDDGPLAKTGSDL 433
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: B7GC13_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC13_PHATC) HSP 1 Score: 139 bits (351), Expect = 2.590e-32 Identity = 105/347 (30.26%), Postives = 166/347 (47.84%), Query Frame = 1
Query: 10 QVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEANTENIGILVESESTCTKEALDNVVKEVSRM-----EREELHEREREGEGRSAAWPRQ-KYHFTLISNEYHLSRIITVHQISETVSLLAPLK-----LLEASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMNSRRPRAKAANLADVRKGADRERRGGGRGGGGEKSGTLRERNERADNDKALRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLED 1017
QVTVEYA+RIRRL++ + PD +CF GGT N++ADA AGYI+FR+LC + + I ++E + + A NVV E+ + + +E + + + S R+ + HF+++S+EYHL ++ +H S S L L ++ +W Y+ + A+ F A YKT + LVP N++ V + EFFQ +NY LV R L + ++ R+P +L DV K +D+ K + L A L + +++ PA VS W++ LE+A+ Q + DPD PL ++WG L D
Sbjct: 208 QVTVEYANRIRRLLKAMLEEDYHPDAICFVGGTSTGNKIADADAGYIYFRYLCACQNISLDGIQFILEY-TRAEQGAFQNVVDELQQKCLPLWRKAAFNEEDEDYQSFSTKIRRRLRVHFSIVSSEYHLCQLNDIHVRSPGQSPLRALGGWMRVSVDTTWAYQYSTTMLPRQKNPARSFCAKHYKTAQRLVPALHNLRGVVDNREFFQRDNYRVLVSARRSLVTDMEKLYHRQP-----SLKDVHKLC-------------------------SDDGKPMDVILESALLNLGRCLDLVRPAGLLTGIVSSTDWSLALTFLEQAVQQICKACDPDEPLDYSDWGSLGD 523
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: A0A1Z5KLQ0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLQ0_FISSO) HSP 1 Score: 125 bits (313), Expect = 1.440e-27 Identity = 111/372 (29.84%), Postives = 172/372 (46.24%), Query Frame = 1
Query: 1 LSSQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGG-TVRD------NRVADASAGYIFFRHLCEQHEANTE-NIGILVE------SESTCTKE--ALDNVVKEVSRMEREELH---EREREGEGRSAAW----PRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLL--------EASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMNSRRPRAKAANLADVRKGADRERRGGGRGGGGEKSGTLRERNERADNDKALRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEK 1023
+ S +TVEYASRIRRLV+ LK PDLVCF TVR ++V +SAGYIFFRHLC + + N+ + ++ S S+ E D+ +++ ++ E L + AW R + +L+S++YH+ +I V Q S S L L + E W + S D + F Y T + L P+ +N++ VAN EFFQ ENY SLV R L + R+ + +P K+ + + G R + + K + L A +L + +++ PA SV+ W + ++LE+A+ Q ++ DPD PL P EWG+L +E+
Sbjct: 92 IDSLITVEYASRIRRLVKALKFEEYNPDLVCFVETETVRHTCLAKKSKVPASSAGYIFFRHLCAAQGVSLKSNLEVYIQGVDHPRSPSSAHTEDPEFDSSLRDDVPLDPEYLALVGVTDILDHSYLPAWRQEAKRLRVKVSLVSSDYHICQIHDVQQRSPRQSALRALNTVTKPSNTTVETKWSFMYTTTAPILSKDKVQGFFYKCYITAQQLYPVVINLRGVANNREFFQRENYLSLVSARRSLVTDMERIYNVQPSLKSVHHLSIYSGN-------------------RVDETQTETKKPVDVVLESALLSLGRCCDLVRPAGLLTGSVTSADWKLAYSILEQAVDQILITCDPDEPLDPLEWGKLAEER 444
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: A0A6H5JFC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC6_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.960e-26 Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 1
Query: 1 LSSQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEA 183
+ QVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEA
Sbjct: 392 IRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEA 452
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: B8C0Y5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0Y5_THAPS) HSP 1 Score: 122 bits (307), Expect = 4.190e-26 Identity = 107/402 (26.62%), Postives = 171/402 (42.54%), Query Frame = 1
Query: 1 LSSQVTVEYASRIRRLVQGLKSG-RLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEANTENIG--ILVESESTCTKEALDNVVKEVSR------MEREELHER--EREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLL--------------------------------------------------EASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMNSRRPRAKAANLADVRKGADRERRGGGRGGGGEKSGTLRERNERADNDKALRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEK 1023
+ QVTVEYA+R+R L + LK +P L+CFTGG N V+DA+AGY++FRHLC + + + ++++S +EA++ + E+ R + L ER + G G + + HFTL+S EYHL + VH S S L PL L + SW ++ YP+ D++ F Y E+L PL VN++ V + EFFQ +NY L +R L + + + + ++ A + K + RN D + AL A L + ++++PA +SV W+ LE+++ + DPD+PL EWG+L D++
Sbjct: 317 IRDQVTVEYATRLRTLAKLLKEEPNFRPKLICFTGGVSEGNVVSDATAGYLYFRHLCVCQGIVIDELQTRMWIDTKSKNEREAMERIASELWRNHIKLWLGERPLTERLNQHYGVGWTILERKVDIHFTLVSTEYHLCNLNDVHHRSPVKSFLQPLVSLRGLVGSDRWVNSHELEAMDPSYSSSVHVRGSNTSPVVPERSTFGGIENSVDTSWSFQYGTYPFLHGKDESIVFLGQCYLLGEELTPLLVNMKGVVEQTEFFQRDNYLLLSSIRRSLVSLVEALYTEKGQSIRAGVI--------------------KYFESQGRNRFTKEDVKIIVALESALLNLGRCIDLVKPAGLLVSSVPAPTWSRALDALEKSMHHIHLVCDPDQPLDSLEWGKLFDDE 698
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: K0TG42_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TG42_THAOC) HSP 1 Score: 120 bits (300), Expect = 3.290e-25 Identity = 109/404 (26.98%), Postives = 165/404 (40.84%), Query Frame = 1
Query: 1 LSSQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQH--EANTENIGILVESESTCTKEALDNVVKEVSRME-REELHER---EREGEGRSAAWP----RQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLL----------------------------------------------------EASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRM-NSRRPRAKAANLADVRKGADRERRGGGRGGGGEKSGTLRERNERADNDKALRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEK 1023
+ QV+VEYA R+R L + L QP L+CFTGG N V+DASAG+++F HLC N ++++S + A++ + E+ R + L ER ER + W R HFTL+S +YHL + +H S S L PL L + SW ++ YP+ DDA F Y E+L PL VN++ V + EFFQ +NY L +R L + + + +A + +G R R RE D + L A L + ++++PA ++V W+ LE+++ Q + DPDRPL EWG+L D++
Sbjct: 313 ICDQVSVEYAGRLRTLAKMLHDDDFQPSLICFTGGISEGNSVSDASAGFVYFNHLCSAQGIRLNDMKTRFWIDTKSFNERVAMERLASELWRNYIKGWLKERPLTERHNQRTFGGWKILERRADIHFTLVSTDYHLCSLNDIHHRSPIKSFLQPLVSLRGLVGSDRFVTDQQELESLDPSYISSVHVSGTAEDAPSPTDRKSFGGIENCVDTSWSFQYSTYPFLHIEDDAVVFLGQCYLLGEELNPLLVNMKGVVEQTEFFQRDNYLLLSSIRRSLVALVEALYTDKGQEIRAGVIRYFEQGHGRNRL------------VTRE-------DVKIIVVLEAALLNLGRCIDLVKPAGLLTSTVPAATWSRALDALEKSMDQIKAVCDPDRPLGALEWGKLTDDE 697
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: M1UUY3_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUY3_CYAM1) HSP 1 Score: 102 bits (253), Expect = 3.050e-19 Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 10 QVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVR-DNRVADASAGYIFFRHLCEQHEANTENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDA 504
Q+T EYA RI LV+ + +GR++P VCFTGG D+ V++A AGY+FFRH+CE+ + +++ I++E + ++ + +++ ++ GE + HFT +S++YHL RI V + +SLLAPL+ L + Y YP+A S + A
Sbjct: 226 QITYEYAVRILTLVRHMVTGRIKPSAVCFTGGRDHPDSLVSEAVAGYLFFRHVCEEFSISLDSVAIILEEQHLNARDCMSSILTQL--------------GEQLVGS------HFTFVSSDYHLIRIREVEAAAPNLSLLAPLRKLRGTVSYAYTTYPFALSKNAA 371
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: A0A7J7IM92_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM92_9RHOD) HSP 1 Score: 100 bits (250), Expect = 6.810e-19 Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 1
Query: 10 QVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVR-DNRVADASAGYIFFRHLCEQHEANTENIGILVESESTCTKEALDNVVKEVSRMEREELHEREREGEGRSAAWPRQKYHFTLISNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDA 504
Q+T EYA RI LV+ + +GR+QP VCFTGG D+ V++A AGY+FFRH+CE+ + + I++E + ++ + +++ ++ GE + HFT +S++YHL RI V +SLLAPL+ L + Y YP+A S D A
Sbjct: 214 QITYEYAVRILTLVRHMATGRIQPSAVCFTGGRDHEDSLVSEAVAGYLFFRHVCEEVGLDLSQVTIILEEQHLNARDCMSSILNQL--------------GEHLVGS------HFTFVSSDYHLIRIREVEASVPKLSLLAPLRKLRGTVSYAYATYPFALSKDAA 359
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Match: A0A7S2PER4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PER4_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.740e-15 Identity = 59/209 (28.23%), Postives = 101/209 (48.33%), Query Frame = 1
Query: 406 SETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANREEFFQEENYASLVHVRERLKEFIRRMNSRRPR-AKAANLADVRKGADRERRGGGRGGGGEKSGTLRERNERADNDKALRKALVWAAGALAKIQEIIEPAATRRNSVSLRGWAMCAALLERAILQAQMSADPDRPLTPAEWGRLEDEKPP 1029
+E ++LL +++A+W ++ YPY S D A + Y E L+P+++N++AV +R+EFFQ +NY LV +R L + ++ P +K L+ + R R + +A+ L A +L++ E++ PA +SV W L+ I + + DPDRPL P+EWG+L D++ P
Sbjct: 1 AEAITLLQR-GIVDATWSFQHATYPYIFSKDPAIAYLGKCYLLAEKLMPMRLNMEAVIDRKEFFQRDNYLGLVSIRRSLVTRVEELHKPPPELSKGLRLS---------------------ANNSSLRRVRGLDTEAVDVVLEGALISLSQCLELVRPAGLHLSSVPRSNWIKAYYALDHTISEIRKICDPDRPLKPSEWGKLVDDEAP 187 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1456.2671.1 >prot_E-siliculosus-1a_F_contig1456.2671.1 ID=prot_E-siliculosus-1a_F_contig1456.2671.1|Name=mRNA_E-siliculosus-1a_F_contig1456.2671.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=485bp LSSQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIback to top mRNA from alignment at E-siliculosus-1a_F_contig1456:24075..32392- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1456.2671.1 ID=mRNA_E-siliculosus-1a_F_contig1456.2671.1|Name=mRNA_E-siliculosus-1a_F_contig1456.2671.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1456:24075..32392- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1456:24075..32392- >mRNA_E-siliculosus-1a_F_contig1456.2671.1 ID=mRNA_E-siliculosus-1a_F_contig1456.2671.1|Name=mRNA_E-siliculosus-1a_F_contig1456.2671.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2910bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1456:24075..32392- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |