mRNA_E-siliculosus-1a_F_contig1456.2670.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1456.2670.1
Unique NamemRNA_E-siliculosus-1a_F_contig1456.2670.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1456.2670.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.600e-30
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:  100 EDGDSKASAPAGAQREAGKRGGGGRVAANGSKTRVARVLAKTKEAVKEAPTPSSVPGSL-RPAAAAPTPPKRRRGRPKKTAVAPTQTE 360
            ED DSKASAPAGAQREAGKRGGGGRVAAN  K RVARV+AKT E  KEAPTPSSVPGSL   AAAAPTPPKRRRGRP+KTAVAPTQTE
Sbjct:  860 EDVDSKASAPAGAQREAGKRGGGGRVAANDGKARVARVVAKTLETTKEAPTPSSVPGSLPAAAAAAPTPPKRRRGRPRKTAVAPTQTE 947
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BLAST of mRNA_E-siliculosus-1a_F_contig1456.2670.1 vs. uniprot
Match: A0A6H5JCZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.710e-26
Identity = 71/89 (79.78%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:  100 EDGDSKASAPAGAQREAGKRGGGGRVAANGSKTRVARVLAKTKEAVKEAPTPSSVPGSLRPA--AAAPTPPKRRRGRPKKTAVAPTQTE 360
            ED   KAS PAGA+REAGKRGGGGRVAANG K RVARV AKTKE  KEA T SSVPGSL PA  AAAPTPPKRRRGRP+KT V PTQTE
Sbjct:  573 EDDAPKASVPAGAKREAGKRGGGGRVAANGGKARVARVEAKTKETTKEALTSSSVPGSLPPAGVAAAPTPPKRRRGRPRKTTVVPTQTE 661
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1456.2670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW21_ECTSI3.600e-3086.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCZ4_9PHAE2.710e-2679.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1456contigE-siliculosus-1a_F_contig1456:23344..23706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size363
Model size363
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CY8W@1,2S2UA@2759
Seed eggNOG ortholog2880.D7FW21
Seed ortholog evalue8.6e-28
Seed ortholog score129.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927965.0222437-CDS-E-siliculosus-1a_F_contig1456:23343..237061622927965.0222437-CDS-E-siliculosus-1a_F_contig1456:23343..23706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1456 23344..23706 -
1696318756.1512918-CDS-E-siliculosus-1a_F_contig1456:23343..237061696318756.1512918-CDS-E-siliculosus-1a_F_contig1456:23343..23706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1456 23344..23706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1456.2670.1prot_E-siliculosus-1a_F_contig1456.2670.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1456 23344..23706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1456.2670.1

>prot_E-siliculosus-1a_F_contig1456.2670.1 ID=prot_E-siliculosus-1a_F_contig1456.2670.1|Name=mRNA_E-siliculosus-1a_F_contig1456.2670.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=121bp
VSPPPPLLGEEILQQPPEAARKGTSKPPGRSSSEDGDSKASAPAGAQREA
GKRGGGGRVAANGSKTRVARVLAKTKEAVKEAPTPSSVPGSLRPAAAAPT
PPKRRRGRPKKTAVAPTQTE*
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mRNA from alignment at E-siliculosus-1a_F_contig1456:23344..23706-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1456.2670.1 ID=mRNA_E-siliculosus-1a_F_contig1456.2670.1|Name=mRNA_E-siliculosus-1a_F_contig1456.2670.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1456:23344..23706- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGTCACCGCCGCCACCGCTATTGGGAGAGGAAATTCTGCAGCAGCCGCC
GGAGGCAGCAAGAAAAGGCACAAGCAAACCGCCGGGGCGATCGAGCTCGG
AGGACGGTGATTCGAAGGCGAGCGCGCCTGCAGGGGCTCAGCGCGAAGCC
GGCAAGCGCGGCGGAGGTGGCCGCGTCGCGGCGAATGGCAGCAAGACACG
GGTCGCAAGGGTCCTAGCGAAAACAAAGGAGGCGGTGAAAGAAGCACCAA
CACCATCATCAGTCCCAGGCTCACTACGGCCGGCGGCGGCGGCGCCAACG
CCGCCGAAGCGAAGGCGGGGACGCCCAAAGAAAACGGCCGTTGCTCCGAC
GCAGACGGAATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1456:23344..23706-

>mRNA_E-siliculosus-1a_F_contig1456.2670.1 ID=mRNA_E-siliculosus-1a_F_contig1456.2670.1|Name=mRNA_E-siliculosus-1a_F_contig1456.2670.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1456:23344..23706- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGTCACCGCCGCCACCGCTATTGGGAGAGGAAATTCTGCAGCAGCCGCC
GGAGGCAGCAAGAAAAGGCACAAGCAAACCGCCGGGGCGATCGAGCTCGG
AGGACGGTGATTCGAAGGCGAGCGCGCCTGCAGGGGCTCAGCGCGAAGCC
GGCAAGCGCGGCGGAGGTGGCCGCGTCGCGGCGAATGGCAGCAAGACACG
GGTCGCAAGGGTCCTAGCGAAAACAAAGGAGGCGGTGAAAGAAGCACCAA
CACCATCATCAGTCCCAGGCTCACTACGGCCGGCGGCGGCGGCGCCAACG
CCGCCGAAGCGAAGGCGGGGACGCCCAAAGAAAACGGCCGTTGCTCCGAC
GCAGACGGAATGAGTGTCACCGCCGCCACCGCTATTGGGAGAGGAAATTC
TGCAGCAGCCGCCGGAGGCAGCAAGAAAAGGCACAAGCAAACCGCCGGGG
CGATCGAGCTCGGAGGACGGTGATTCGAAGGCGAGCGCGCCTGCAGGGGC
TCAGCGCGAAGCCGGCAAGCGCGGCGGAGGTGGCCGCGTCGCGGCGAATG
GCAGCAAGACACGGGTCGCAAGGGTCCTAGCGAAAACAAAGGAGGCGGTG
AAAGAAGCACCAACACCATCATCAGTCCCAGGCTCACTACGGCCGGCGGC
GGCGGCGCCAACGCCGCCGAAGCGAAGGCGGGGACGCCCAAAGAAAACGG
CCGTTGCTCCGACGCAGACGGAATGA
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