mRNA_E-siliculosus-1a_F_contig1455.2667.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1455.2667.1
Unique NamemRNA_E-siliculosus-1a_F_contig1455.2667.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI)

HSP 1 Score: 496 bits (1277), Expect = 5.230e-176
Identity = 259/276 (93.84%), Postives = 265/276 (96.01%), Query Frame = 1
Query:    1 TEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 828
            +EATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTV VSKVRD+GGVIYHYGT+SG PQPRLEAGRPASLALDSAKRLRHA LHSAGHAVDKAVVGAVGAGVF+PLKGYHFDDSPYVEYRG LPAGLEKDAFIEKCNSEL KLVMAN ET+VKMADQEH DEAPSSSSSSAQEGP+RGAAGRGREEV V AERGGRGGRGKVPASSTAA ATKYGAATR VTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS
Sbjct:   11 SEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKVRDVGGVIYHYGTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMADQEHGDEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRTVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 286          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A6H5JDI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.480e-51
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 1
Query:  220 AGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQ 501
            AGRP SLALDSAKRLRHAVLHSAGHAVDKAV GAVGAGVF+PLKGYHFDDSPYVEYRG LPAGLEKDAFIEKCNSEL KLV+AN ETVVKMADQ
Sbjct:   11 AGRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVKMADQ 104          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A6H5JSV6_9PHAE (tRNA_SAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV6_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.850e-49
Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 1
Query:  499 QEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 828
            +EH DEAPSSS+SSAQEGPARGAAG GREEVAV AE  GR G+G VPAS TAA ATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITK KAKKGT+RVSYTLAPSS
Sbjct:   21 EEHGDEAPSSSASSAQEGPARGAAGTGREEVAVVAEPEGRRGKGNVPASLTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKAKAKKGTIRVSYTLAPSS 130          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A835Z9X7_9STRA (Alanyl-tRNA editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA)

HSP 1 Score: 163 bits (413), Expect = 5.650e-46
Identity = 102/266 (38.35%), Postives = 136/266 (51.13%), Query Frame = 1
Query:   25 VEDDSQGSAIILDRTIFHPQGGGQPSDEGTITC-GDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLA 819
            V DD    A++LDRT+FHPQGGGQP+D GT+    +    V+ V+  G VI H+G   G+   +L+ G     ++D  +RL+ A LHSAGHA+D AV  A G     P KGYHF+D PYVEY G L A  ++   ++K N+EL  L+ A  ET V+ ++                                                           A  R+V+V G +CPCGGTHVRST E+ G+R+TK KAK G LRVSYT+A
Sbjct:   24 VRDD----AVVLDRTVFHPQGGGQPTDRGTLKIHNEVAFVVANVKADGDVILHFGQ-HGEGDKKLQTGDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVRQSE-----------------------------------------------------------AGLRVVSVGGCACPCGGTHVRSTAELRGLRVTKAKAKSGRLRVSYTIA 223          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7S1TVS7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.900e-38
Identity = 99/268 (36.94%), Postives = 132/268 (49.25%), Query Frame = 1
Query:   34 DSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSKVRDMGGVIYHYGTI---SGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAAT-RIVTVAGL-SCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
            D    A+ILDRT+FH QGGGQP+D GTIT       V+ VR  G  ++H+G+     G       AG    L++D  KR+ HA  HSAGHA+D AV    G    A  KGYHF D PYVEY G L   + K+  ++  N ++ +++  +  T V     E                                          K    +  A  +   A T R+VTVAG  +CPCGGTHVRST E+ GV +TKVK+KKG ++VSY++ P
Sbjct:   57 DDATHAVILDRTVFHAQGGGQPADLGTITADGAVFEVTGVRSAGDAVHHFGSFRGGDGDAPAAFAAGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEVLYLSPEEA----------------------------------------KAACGTPDADFSHITAPTIRVVTVAGGGTCPCGGTHVRSTAELGGVTVTKVKSKKGRIKVSYSVTP 282          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7S2WSC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.280e-36
Identity = 98/274 (35.77%), Postives = 143/274 (52.19%), Query Frame = 1
Query:    1 TEATVLGVVEDDSQGSA-IILDRTIFHPQGGGQPSDEGTITC--GDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTET-VVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSY 810
            T A V+ V      G   +ILD+T+FHPQGGGQP+D+G ++   G+  V++ K     G+++H+G++ G     LEAG      +D   R   + LHSAGHA+D A+     +G+  P KGYHF D+PYVEY G L A  EKD+  E+  +ELQ ++     + VV ++  E  +  P ++                   V++  E                      GA  R+V V G  CPCGGTHV +  E+E V +T++KAKKGT++VSY
Sbjct:   61 TPAVVVEVEPVPESGDLKVILDKTVFHPQGGGQPADKGVLSFPGGEFRVSMVKEDRSTGLVFHFGSM-GSGSGSLEAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSGL-TPTKGYHFPDAPYVEYAGTLAAE-EKDSLQERLTNELQSIIEKQVPSKVVYLSAPEVLELCPGAN-------------------VSIFPE----------------------GAMIRVVNVGGCWCPCGGTHVGNASELERVTVTRIKAKKGTVKVSY 290          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: L8GVN5_ACACA (Threonine/alanine tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA)

HSP 1 Score: 139 bits (350), Expect = 4.380e-36
Identity = 96/260 (36.92%), Postives = 130/260 (50.00%), Query Frame = 1
Query:   49 AIILDRTIFHPQGGGQPSDEGTI-TCGDCTVAVSKVRDM--GGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTV-AGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
            A++LDRTIFHPQGGGQP D G + +       VS+VR     GVI H GT + +     +AG    L +D AKR  HA LHSAGH +DKAV          P KGYHF D+PYVEY+G      ++ + +++   E  +L+   +E  V++   +   E    S+S +   P         E V                               R+VTV A L CPCGGTHV++T E+  + I K+ AKKG +R+SYTL
Sbjct:   43 AVVLDRTIFHPQGGGQPFDTGVVASAAGVKFTVSEVRANREDGVIQHIGTFA-EAGTTFQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQSALKRLEDECNRLIAEGSEVTVQVVHSKEEVERLCGSASDSGANPT--------EPV-------------------------------RVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTL 262          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A0D2UDV3_CAPO3 (Alanyl-tRNA synthetase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UDV3_CAPO3)

HSP 1 Score: 134 bits (336), Expect = 9.060e-34
Identity = 100/275 (36.36%), Postives = 135/275 (49.09%), Query Frame = 1
Query:   37 SQGSAIILDRTIFHPQGGGQPSDEGTITCGD------CTVAVSKVRDMGGVIYHYGTISGKPQP-----RLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGA--ATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
            S G  ++LD TI HPQGGGQPSD G I            V V   +    V++HYG+   +           AG P ++ +D +KR  HA LHSAGH +D AV      G+  P KGYHF D P VEY G L   + +D      N ELQ+L+    +  VK               +S  EG      G G    A +A          VPA  T+    +Y +  A R+V + G+ CPCGGTHV+S  +++ V++TKVK  KGTL+V Y ++P
Sbjct:   45 SPGLDLVLDETIMHPQGGGQPSDVGFIQWDAQPERRFTVVDVRADKGAAAVVHHYGSFGSQDLDDAALATASAGAPVTIHVDESKRRLHARLHSAGHLLDSAVRNLGHTGL-VPSKGYHFPDGPNVEYLGELEQTV-RDGLPAALNIELQRLIATGGDVQVKYVP------------TSTLEG-----GGSGHSLAAPSA----------VPAQETSEP-LRYDSPDAVRMVNIGGVECPCGGTHVKSIGDLQNVKVTKVKRAKGTLKVYYEVSP 289          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7C7CFP2_9FLAO (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7CFP2_9FLAO)

HSP 1 Score: 129 bits (324), Expect = 1.340e-32
Identity = 86/274 (31.39%), Postives = 130/274 (47.45%), Query Frame = 1
Query:    7 ATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSKVRDMGGVIYHYGTI-SGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMAD-----QEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSY 810
            A+VL V       + +ILDRTIF+PQGGGQP D GT+   +    +  VR   G + H G   SG     ++ G    L +D  +R+ +A  H+AGH +D A+        F P KGYHF DSPYVEY G++ A  +++A +EK ++EL +L+    +    + D     +++C   P+                                    VP               R+V VAGL CPCGGTH+    ++  V+++K+K+K G +R+ Y
Sbjct:    9 ASVLDVRISTEGDTQLILDRTIFYPQGGGQPFDLGTVQTENSVFEIESVRFADGFVLHNGNFRSGN----IKVGEAVDLKIDVERRVLNAKNHTAGHLIDAAMANCNFN--FTPTKGYHFPDSPYVEYNGMIEAD-DREAAMEKLDAELARLISTGGKVEALLVDSYADLKDYCQFVPA-----------------------------------YVPKDKPV----------RVVRVAGLGCPCGGTHMSEISDLVSVKVSKIKSKSGNVRIGY 230          
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7S4MSZ2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MSZ2_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 2.380e-32
Identity = 92/265 (34.72%), Postives = 123/265 (46.42%), Query Frame = 1
Query:   43 GSAIILDRTIFHPQGGGQPSDEGTIT------CGDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAA-TRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
            G  I LD+T FHPQGGGQP+D GT+T       G   V + K +D  G+++H G      +P    G      +D   R ++A +HSAGH +D A+  A       P KGYHF    YVEY G L A  E+DA + K  + + +L+ A   T+VK                   EGP  G                        PA S     T +G    R+V+V G  CPCGGTHV  T+E+ GV++  +K K    RVSYT+
Sbjct:   10 GWRIALDQTCFHPQGGGQPADSGTLTEAGGXXXGAYAVTMVK-KDPAGIVWHEGA----SEPPFGKGATVRCDVDEPFRRKNARVHSAGHLIDVAM--ARSGCTLKPTKGYHFTPGAYVEYEGKLDAA-ERDALVPKVQAAMDELISAGVPTLVKTV-----------------EGPTLGQ---------------------HCPAGSIPEDPTLWGVGWVRVVSVGGQGCPCGGTHVNDTKELGGVKVEAIKGKGKVTRVSYTM 228          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB2_ECTSI5.230e-17693.84Similar to ATP binding / alanine-tRNA ligase n=1 T... [more]
A0A6H5JDI3_9PHAE1.480e-5192.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV6_9PHAE1.850e-4987.27tRNA_SAD domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z9X7_9STRA5.650e-4638.35Alanyl-tRNA editing protein AlaX-M-like protein n=... [more]
A0A7S1TVS7_9STRA2.900e-3836.94Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WSC3_9STRA1.280e-3635.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
L8GVN5_ACACA4.380e-3636.92Threonine/alanine tRNA ligase subfamily protein n=... [more]
A0A0D2UDV3_CAPO39.060e-3436.36Alanyl-tRNA synthetase n=2 Tax=Capsaspora owczarza... [more]
A0A7C7CFP2_9FLAO1.340e-3231.39AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
A0A7S4MSZ2_9EUKA2.380e-3234.72Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1455contigE-siliculosus-1a_F_contig1455:28900..31901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size873
Model size873
Exons5
Ec32 orthologEc-01_006770.1
Ec32 ortholog descriptionSimilar to ATP binding / alanine-tRNA ligase
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2S23F@2759,COG2872@1
EggNOG free text desc.Threonyl and Alanyl tRNA synthetase second additional domain
Seed eggNOG ortholog2880.D7FQB2
Seed ortholog evalue4.5e-139
Seed ortholog score500.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1455.2667.1prot_E-siliculosus-1a_F_contig1455.2667.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1455 28900..31901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927964.8065894-CDS-E-siliculosus-1a_F_contig1455:28899..292711622927964.8065894-CDS-E-siliculosus-1a_F_contig1455:28899..29271Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 28900..29271 -
1696318756.0354505-CDS-E-siliculosus-1a_F_contig1455:28899..292711696318756.0354505-CDS-E-siliculosus-1a_F_contig1455:28899..29271Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 28900..29271 -
1622927964.8223872-CDS-E-siliculosus-1a_F_contig1455:29765..298311622927964.8223872-CDS-E-siliculosus-1a_F_contig1455:29765..29831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 29766..29831 -
1696318756.0499327-CDS-E-siliculosus-1a_F_contig1455:29765..298311696318756.0499327-CDS-E-siliculosus-1a_F_contig1455:29765..29831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 29766..29831 -
1622927964.835398-CDS-E-siliculosus-1a_F_contig1455:30087..303031622927964.835398-CDS-E-siliculosus-1a_F_contig1455:30087..30303Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 30088..30303 -
1696318756.0635438-CDS-E-siliculosus-1a_F_contig1455:30087..303031696318756.0635438-CDS-E-siliculosus-1a_F_contig1455:30087..30303Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 30088..30303 -
1622927964.8659675-CDS-E-siliculosus-1a_F_contig1455:31052..311621622927964.8659675-CDS-E-siliculosus-1a_F_contig1455:31052..31162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 31053..31162 -
1696318756.072809-CDS-E-siliculosus-1a_F_contig1455:31052..311621696318756.072809-CDS-E-siliculosus-1a_F_contig1455:31052..31162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 31053..31162 -
1622927964.880459-CDS-E-siliculosus-1a_F_contig1455:31792..319011622927964.880459-CDS-E-siliculosus-1a_F_contig1455:31792..31901Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 31793..31901 -
1696318756.0831053-CDS-E-siliculosus-1a_F_contig1455:31792..319011696318756.0831053-CDS-E-siliculosus-1a_F_contig1455:31792..31901Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 31793..31901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1455.2667.1

>prot_E-siliculosus-1a_F_contig1455.2667.1 ID=prot_E-siliculosus-1a_F_contig1455.2667.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=291bp
TEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSK
VRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAV
DKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSEL
QKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVA
AERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTRE
MEGVRITKVKAKKGTLRVSYTLAPSSSSSSSSSSSSSRPS*
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mRNA from alignment at E-siliculosus-1a_F_contig1455:28900..31901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1455.2667.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2667.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:28900..31901- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAGAGGCGACGGTCTTGGGCGTGGTCGAAGATGACTCCCAAGGTTCTGC GATCATTTTGGACCGCACGATCTTCCACCCTCAGGGCGGGGGGCAGCCAA GCGATGAAGGTGCATGGTGCGACGGGCTGATTATGGACAAACCTGTCCCC TGTGGCAAAATGTTTTGGAGTGGTGGGGGTAGCAGGTGTTTCAAGCGACT TTGGAATCTAATGGTTTGATTCGGTTTCTAAATTACGGTTCAACATGCCG TCTCCGGTTTGAATGTACGCCGTCTATGAGAAGAGTTGTCGACAGCGGGT GACGTTCCAATTAAGCCAGACGCTGCCTGGCCGCTCGTCTGATAATTTTG CACACAACCAGCACAAGCTCACAGTGACGTGGTAGTTTATCGCGTTGAGG CACGTCAACTCTCACTACAGTCAGGATGTTGTGGTTTTGTGGTTTAGTTG TGCTTCGCTTTCCTTCCCGCCGTTGACACTTGCTTGTGCCTTCGCACGAG ATCGTGTGATCGAGTCTGTCTTTTCACACCAAAAGTCTGTTGAGCCTACC TTTTGTTCTGCCGATTGATTGAAACACCCACCAATACCTCGTTTGTGAGG CCAATGCCCACGCGGCATCCCCGAATACAATACTAGTTGTCGTATTCCTG CCCTGAAAACGATTGACCGTAGGCCTGCTCATATGCTCTTGGTTCTTCTC TAAATATATGTCGCTGAAGCACTACATAATTTCATGCAGGAACCATCACG TGCGGAGACTGCACCGTGGCCGTGAGCAAGGTTAGAGACATGGGTGGCGT GATCTACCACTACGGGACGATCTCGGGAAAACCACAACCTCGGCTGGAGG TAAGCGAGCGGCCCGTCGTCGCCCAACAGCAACGACCAAAGAACGAAATG TGTAAACTTCTTTTCGCGCGAGCGCATCGGCGTCGGGAATATATGGTGGA ATCCGCGTTCGTCTCCAGTTGATCACGCCGCCAAGGCGGCCCGATCGATC CAGGCATTCCCATCGATCTCTGGAATCGTTATTTTGTTATTCGCTCATTA GCCGGAATCTAGCCGGTAGTCACAGACCAGGCGATGAAACCCCCTCGCCA GGTCTTACGGCTCAGGAACATTTTTTTTGTTGTTCCCGTCCAGACCTTCC CGTCAGTGGCAGTTTTTTGCCCGGAAGGTATGGGCATATGCATAGATCGT TCTCGGCCAAGAGGAAATAGTTCACTTCTGTGAGATAGGGTTCTCGGGGA ATCCTCCGAGTCATTCACGTGCCCGTGCGTTCGTGCGTGCGTGGGGGGGT GTTGACTAGAGTCTGGTGGCGTCCCGATTGATTGGTTGCCTTGTCGCACG TACGGGGCGGACGTACGTATGACTCGATGGTATATCCTCCACTATCCTGG GTATCTTTCATCAATCGGCCTCACGCACGCGTGTACCGAACTAACCAAGC CCATAAATCGGTGCGCGCAACCATGGAACGCGCCACCATCGTTCGTTGTC AAGACGAACAGCGGGTCGCCCTCCTTCCTTTCGTGCCTATCCACCCACCG CCTCCCCCCCTACCGCTCGCGTTTTTTCCGGCCCTCGTGGAAGAACAGGC GGGACGGCCAGCATCTCTGGCGCTGGACAGCGCCAAGCGACTGAGGCACG CGGTTCTGCACTCGGCGGGGCACGCGGTCGACAAGGCCGTCGTGGGCGCG GTGGGCGCGGGCGTGTTCGCGCCGCTCAAGGGCTACCACTTCGACGACTC GCCCTACGTGGAGTACCGAGGCATCTTGCCGGCAGGCCTGGAGAAGGATG CCTTCATCGAGAAGGTATACATGCTCCATGATGAGTGGTGTCTGGTAGAG CGCTACGTACTTGACAGAGATAATTTGCACCCTTCTGACCCTCCACGAGA AGCTGAGCCTGACGCTGGTCTTCACTTCAAATTAGCGCTCACAGCACTTG TGCCTTTTACTCCAACCCGTGGTCACACAGAAGGGTTCCAGACTAAATAG TTTCAATTACAAGTCAGTTTTTAACCTCTTCTTGCCTGTTGCGTCTACAT GTATGTCCCTCACGCCACAGTGTAACAGCGAGCTCCAGAAGCTGGTGATG GCGAATACGGAGACTGTGGTCAAGATGGCGGATCAGGTGCGTGCGTGGGG CCCAAGGGCCGGGAGAGAGGGGGGGGGGGGCGGCATGGCGGGGAGCATGC TCCACGACGGGTCGTCGAGTCTCGTGTGTGGTGCGGCCCCTTTTGGGGGG AAAACATTGACCAAACTATCTAACGGTGGGTGCACACAGCTAGTAGTCCA AAGAGTGGGGGAGCTAGTGCTTCGGACACTGTATCCGACCGGATATCGGA CTACAAGGTTGTGCTTTCGAAGCGTTTTTTTTGGCATTGACCGTACATTT CTCATTTTTGGGTGTGGCCCCACACACAAACTGAAGTAGTGCGTTTACTG CTGCGCGAATGCTCTACACAACGGCGGTTGGTTGTGCCTGGATGCATTCG AGGACGCTCTCTCCGAATCATGTGCAAAAACAGAGTAGGAGGAAGATTGG CGAGTGTAGTTCGCTCCTGAATGATTCGACACTTGGTTTCTTCGCTCCGC TTGTCTGTCTCGCGTGCACAATAATGGTAGGAACACTGCGATGAGGCTCC ATCGTCGTCGTCGTCATCAGCACAAGAAGGTCCCGCGAGAGGGGCGGCAG GCAGAGGCAGGGAGGAGGTAGCAGTAGCAGCAGAGCGAGGAGGAAGAGGG GGGAGGGGGAAGGTGCCGGCGTCATCAACCGCGGCGGTAGCGACAAAGTA TGGCGCGGCGACGCGCATCGTGACGGTGGCCGGCCTCTCCTGCCCCTGCG GCGGAACCCACGTGCGGAGTACCAGAGAGATGGAGGGCGTGCGCATCACC AAGGTCAAGGCCAAGAAGGGCACTCTTCGTGTCAGCTACACTCTCGCCCC TTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGGCCATCGT AA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1455:28900..31901-

>mRNA_E-siliculosus-1a_F_contig1455.2667.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2667.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1746bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:28900..31901- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAGAGGCGACGGTCTTGGGCGTGGTCGAAGATGACTCCCAAGGTTCTGC
GATCATTTTGGACCGCACGATCTTCCACCCTCAGGGCGGGGGGCAGCCAA
GCGATGAAGACAGAGGCGACGGTCTTGGGCGTGGTCGAAGATGACTCCCA
AGGTTCTGCGATCATTTTGGACCGCACGATCTTCCACCCTCAGGGCGGGG
GGCAGCCAAGCGATGAAGGAACCATCACGTGCGGAGACTGCACCGTGGCC
GTGAGCAAGGTTAGAGACATGGGTGGCGTGATCTACCACTACGGGACGAT
CTCGGGAAAACCACAACCTCGGCTGGAGGAACCATCACGTGCGGAGACTG
CACCGTGGCCGTGAGCAAGGTTAGAGACATGGGTGGCGTGATCTACCACT
ACGGGACGATCTCGGGAAAACCACAACCTCGGCTGGAGGCGGGACGGCCA
GCATCTCTGGCGCTGGACAGCGCCAAGCGACTGAGGCACGCGGTTCTGCA
CTCGGCGGGGCACGCGGTCGACAAGGCCGTCGTGGGCGCGGTGGGCGCGG
GCGTGTTCGCGCCGCTCAAGGGCTACCACTTCGACGACTCGCCCTACGTG
GAGTACCGAGGCATCTTGCCGGCAGGCCTGGAGAAGGATGCCTTCATCGA
GAAGGCGGGACGGCCAGCATCTCTGGCGCTGGACAGCGCCAAGCGACTGA
GGCACGCGGTTCTGCACTCGGCGGGGCACGCGGTCGACAAGGCCGTCGTG
GGCGCGGTGGGCGCGGGCGTGTTCGCGCCGCTCAAGGGCTACCACTTCGA
CGACTCGCCCTACGTGGAGTACCGAGGCATCTTGCCGGCAGGCCTGGAGA
AGGATGCCTTCATCGAGAAGTGTAACAGCGAGCTCCAGAAGCTGGTGATG
GCGAATACGGAGACTGTGGTCAAGATGGCGGATCAGTGTAACAGCGAGCT
CCAGAAGCTGGTGATGGCGAATACGGAGACTGTGGTCAAGATGGCGGATC
AGGAACACTGCGATGAGGCTCCATCGTCGTCGTCGTCATCAGCACAAGAA
GGTCCCGCGAGAGGGGCGGCAGGCAGAGGCAGGGAGGAGGTAGCAGTAGC
AGCAGAGCGAGGAGGAAGAGGGGGGAGGGGGAAGGTGCCGGCGTCATCAA
CCGCGGCGGTAGCGACAAAGTATGGCGCGGCGACGCGCATCGTGACGGTG
GCCGGCCTCTCCTGCCCCTGCGGCGGAACCCACGTGCGGAGTACCAGAGA
GATGGAGGGCGTGCGCATCACCAAGGTCAAGGCCAAGAAGGGCACTCTTC
GTGTCAGCTACACTCTCGCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCCGGCCATCGTAAGAACACTGCGATGAGGCTCCATCGTC
GTCGTCGTCATCAGCACAAGAAGGTCCCGCGAGAGGGGCGGCAGGCAGAG
GCAGGGAGGAGGTAGCAGTAGCAGCAGAGCGAGGAGGAAGAGGGGGGAGG
GGGAAGGTGCCGGCGTCATCAACCGCGGCGGTAGCGACAAAGTATGGCGC
GGCGACGCGCATCGTGACGGTGGCCGGCCTCTCCTGCCCCTGCGGCGGAA
CCCACGTGCGGAGTACCAGAGAGATGGAGGGCGTGCGCATCACCAAGGTC
AAGGCCAAGAAGGGCACTCTTCGTGTCAGCTACACTCTCGCCCCTTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGGCCATCGTAA
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