mRNA_E-siliculosus-1a_F_contig1455.2667.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI) HSP 1 Score: 496 bits (1277), Expect = 5.230e-176 Identity = 259/276 (93.84%), Postives = 265/276 (96.01%), Query Frame = 1
Query: 1 TEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 828
+EATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTV VSKVRD+GGVIYHYGT+SG PQPRLEAGRPASLALDSAKRLRHA LHSAGHAVDKAVVGAVGAGVF+PLKGYHFDDSPYVEYRG LPAGLEKDAFIEKCNSEL KLVMAN ET+VKMADQEH DEAPSSSSSSAQEGP+RGAAGRGREEV V AERGGRGGRGKVPASSTAA ATKYGAATR VTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS
Sbjct: 11 SEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKVRDVGGVIYHYGTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMADQEHGDEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRTVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 286
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A6H5JDI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.480e-51 Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 1
Query: 220 AGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQ 501
AGRP SLALDSAKRLRHAVLHSAGHAVDKAV GAVGAGVF+PLKGYHFDDSPYVEYRG LPAGLEKDAFIEKCNSEL KLV+AN ETVVKMADQ
Sbjct: 11 AGRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVKMADQ 104
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A6H5JSV6_9PHAE (tRNA_SAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV6_9PHAE) HSP 1 Score: 169 bits (429), Expect = 1.850e-49 Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 1
Query: 499 QEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 828
+EH DEAPSSS+SSAQEGPARGAAG GREEVAV AE GR G+G VPAS TAA ATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITK KAKKGT+RVSYTLAPSS
Sbjct: 21 EEHGDEAPSSSASSAQEGPARGAAGTGREEVAVVAEPEGRRGKGNVPASLTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKAKAKKGTIRVSYTLAPSS 130
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A835Z9X7_9STRA (Alanyl-tRNA editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA) HSP 1 Score: 163 bits (413), Expect = 5.650e-46 Identity = 102/266 (38.35%), Postives = 136/266 (51.13%), Query Frame = 1
Query: 25 VEDDSQGSAIILDRTIFHPQGGGQPSDEGTITC-GDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLA 819
V DD A++LDRT+FHPQGGGQP+D GT+ + V+ V+ G VI H+G G+ +L+ G ++D +RL+ A LHSAGHA+D AV A G P KGYHF+D PYVEY G L A ++ ++K N+EL L+ A ET V+ ++ A R+V+V G +CPCGGTHVRST E+ G+R+TK KAK G LRVSYT+A
Sbjct: 24 VRDD----AVVLDRTVFHPQGGGQPTDRGTLKIHNEVAFVVANVKADGDVILHFGQ-HGEGDKKLQTGDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVRQSE-----------------------------------------------------------AGLRVVSVGGCACPCGGTHVRSTAELRGLRVTKAKAKSGRLRVSYTIA 223
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7S1TVS7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA) HSP 1 Score: 145 bits (366), Expect = 2.900e-38 Identity = 99/268 (36.94%), Postives = 132/268 (49.25%), Query Frame = 1
Query: 34 DSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSKVRDMGGVIYHYGTI---SGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAAT-RIVTVAGL-SCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
D A+ILDRT+FH QGGGQP+D GTIT V+ VR G ++H+G+ G AG L++D KR+ HA HSAGHA+D AV G A KGYHF D PYVEY G L + K+ ++ N ++ +++ + T V E K + A + A T R+VTVAG +CPCGGTHVRST E+ GV +TKVK+KKG ++VSY++ P
Sbjct: 57 DDATHAVILDRTVFHAQGGGQPADLGTITADGAVFEVTGVRSAGDAVHHFGSFRGGDGDAPAAFAAGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEVLYLSPEEA----------------------------------------KAACGTPDADFSHITAPTIRVVTVAGGGTCPCGGTHVRSTAELGGVTVTKVKSKKGRIKVSYSVTP 282
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7S2WSC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.280e-36 Identity = 98/274 (35.77%), Postives = 143/274 (52.19%), Query Frame = 1
Query: 1 TEATVLGVVEDDSQGSA-IILDRTIFHPQGGGQPSDEGTITC--GDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTET-VVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSY 810
T A V+ V G +ILD+T+FHPQGGGQP+D+G ++ G+ V++ K G+++H+G++ G LEAG +D R + LHSAGHA+D A+ +G+ P KGYHF D+PYVEY G L A EKD+ E+ +ELQ ++ + VV ++ E + P ++ V++ E GA R+V V G CPCGGTHV + E+E V +T++KAKKGT++VSY
Sbjct: 61 TPAVVVEVEPVPESGDLKVILDKTVFHPQGGGQPADKGVLSFPGGEFRVSMVKEDRSTGLVFHFGSM-GSGSGSLEAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSGL-TPTKGYHFPDAPYVEYAGTLAAE-EKDSLQERLTNELQSIIEKQVPSKVVYLSAPEVLELCPGAN-------------------VSIFPE----------------------GAMIRVVNVGGCWCPCGGTHVGNASELERVTVTRIKAKKGTVKVSY 290
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: L8GVN5_ACACA (Threonine/alanine tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA) HSP 1 Score: 139 bits (350), Expect = 4.380e-36 Identity = 96/260 (36.92%), Postives = 130/260 (50.00%), Query Frame = 1
Query: 49 AIILDRTIFHPQGGGQPSDEGTI-TCGDCTVAVSKVRDM--GGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTV-AGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
A++LDRTIFHPQGGGQP D G + + VS+VR GVI H GT + + +AG L +D AKR HA LHSAGH +DKAV P KGYHF D+PYVEY+G ++ + +++ E +L+ +E V++ + E S+S + P E V R+VTV A L CPCGGTHV++T E+ + I K+ AKKG +R+SYTL
Sbjct: 43 AVVLDRTIFHPQGGGQPFDTGVVASAAGVKFTVSEVRANREDGVIQHIGTFA-EAGTTFQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQSALKRLEDECNRLIAEGSEVTVQVVHSKEEVERLCGSASDSGANPT--------EPV-------------------------------RVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTL 262
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A0D2UDV3_CAPO3 (Alanyl-tRNA synthetase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UDV3_CAPO3) HSP 1 Score: 134 bits (336), Expect = 9.060e-34 Identity = 100/275 (36.36%), Postives = 135/275 (49.09%), Query Frame = 1
Query: 37 SQGSAIILDRTIFHPQGGGQPSDEGTITCGD------CTVAVSKVRDMGGVIYHYGTISGKPQP-----RLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGA--ATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
S G ++LD TI HPQGGGQPSD G I V V + V++HYG+ + AG P ++ +D +KR HA LHSAGH +D AV G+ P KGYHF D P VEY G L + +D N ELQ+L+ + VK +S EG G G A +A VPA T+ +Y + A R+V + G+ CPCGGTHV+S +++ V++TKVK KGTL+V Y ++P
Sbjct: 45 SPGLDLVLDETIMHPQGGGQPSDVGFIQWDAQPERRFTVVDVRADKGAAAVVHHYGSFGSQDLDDAALATASAGAPVTIHVDESKRRLHARLHSAGHLLDSAVRNLGHTGL-VPSKGYHFPDGPNVEYLGELEQTV-RDGLPAALNIELQRLIATGGDVQVKYVP------------TSTLEG-----GGSGHSLAAPSA----------VPAQETSEP-LRYDSPDAVRMVNIGGVECPCGGTHVKSIGDLQNVKVTKVKRAKGTLKVYYEVSP 289
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7C7CFP2_9FLAO (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7CFP2_9FLAO) HSP 1 Score: 129 bits (324), Expect = 1.340e-32 Identity = 86/274 (31.39%), Postives = 130/274 (47.45%), Query Frame = 1
Query: 7 ATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSKVRDMGGVIYHYGTI-SGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMAD-----QEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSY 810
A+VL V + +ILDRTIF+PQGGGQP D GT+ + + VR G + H G SG ++ G L +D +R+ +A H+AGH +D A+ F P KGYHF DSPYVEY G++ A +++A +EK ++EL +L+ + + D +++C P+ VP R+V VAGL CPCGGTH+ ++ V+++K+K+K G +R+ Y
Sbjct: 9 ASVLDVRISTEGDTQLILDRTIFYPQGGGQPFDLGTVQTENSVFEIESVRFADGFVLHNGNFRSGN----IKVGEAVDLKIDVERRVLNAKNHTAGHLIDAAMANCNFN--FTPTKGYHFPDSPYVEYNGMIEAD-DREAAMEKLDAELARLISTGGKVEALLVDSYADLKDYCQFVPA-----------------------------------YVPKDKPV----------RVVRVAGLGCPCGGTHMSEISDLVSVKVSKIKSKSGNVRIGY 230
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Match: A0A7S4MSZ2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MSZ2_9EUKA) HSP 1 Score: 128 bits (322), Expect = 2.380e-32 Identity = 92/265 (34.72%), Postives = 123/265 (46.42%), Query Frame = 1
Query: 43 GSAIILDRTIFHPQGGGQPSDEGTIT------CGDCTVAVSKVRDMGGVIYHYGTISGKPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFAPLKGYHFDDSPYVEYRGILPAGLEKDAFIEKCNSELQKLVMANTETVVKMADQEHCDEAPSSSSSSAQEGPARGAAGRGREEVAVAAERGGRGGRGKVPASSTAAVATKYGAA-TRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
G I LD+T FHPQGGGQP+D GT+T G V + K +D G+++H G +P G +D R ++A +HSAGH +D A+ A P KGYHF YVEY G L A E+DA + K + + +L+ A T+VK EGP G PA S T +G R+V+V G CPCGGTHV T+E+ GV++ +K K RVSYT+
Sbjct: 10 GWRIALDQTCFHPQGGGQPADSGTLTEAGGXXXGAYAVTMVK-KDPAGIVWHEGA----SEPPFGKGATVRCDVDEPFRRKNARVHSAGHLIDVAM--ARSGCTLKPTKGYHFTPGAYVEYEGKLDAA-ERDALVPKVQAAMDELISAGVPTLVKTV-----------------EGPTLGQ---------------------HCPAGSIPEDPTLWGVGWVRVVSVGGQGCPCGGTHVNDTKELGGVKVEAIKGKGKVTRVSYTM 228 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1455.2667.1 >prot_E-siliculosus-1a_F_contig1455.2667.1 ID=prot_E-siliculosus-1a_F_contig1455.2667.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=291bp TEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVAVSKback to top mRNA from alignment at E-siliculosus-1a_F_contig1455:28900..31901- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1455.2667.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2667.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:28900..31901- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1455:28900..31901- >mRNA_E-siliculosus-1a_F_contig1455.2667.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2667.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2667.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1746bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:28900..31901- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |