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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI) HSP 1 Score: 869 bits (2246), Expect = 1.900e-305 Identity = 566/640 (88.44%), Postives = 566/640 (88.44%), Query Frame = 3
Query: 705 MVRDDGFAAAXXXXXXXXXXXXXXXXXXXXXPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXX--FPDGAMXXXXXXXXXXXMRSPLVSGAVXXXXXXMHHLMLPSTAGGAGGSSHADPDFHHLAGPDYRHASDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGAXXXXXXXXXXAGDLAVLKGSGLLSPASAADGNSGGGKPAGSLAPPP--------SPASMAGGEASRRMAGLPVPEAQVLSALEGQGSDGEXXXXXXXXXXXXXXXX-------EDISDKVARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGARAAAAVNHAPAV 2564
MVRDDGFAAA PLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXX FPDGAM XXXXXXXXXXMRSPLVSGAV XXXX MHHLMLPSTAGGAGGSSHADPD HHLA PDYRHA DTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGA AGDLAVLKGSGLLSPASAADGNSG SPA AGGEASRRMAGLPVPEAQVLSALEGQ SDGE XXXXXXXXXXXXXXX EDISDKVARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGARAAAA NHAPAV
Sbjct: 1 MVRDDGFAAAPQMQQHHGSMSASRHHQPQQQPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXXXYFPDGAMSXXXXXXXXXXMRSPLVSGAVAXXXXGMHHLMLPSTAGGAGGSSHADPDLHHLAAPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGAGRASAAS---AGDLAVLKGSGLLSPASAADGNSGXXXXXXXXXXXXXXXXXXXXSPALTAGGEASRRMAGLPVPEAQVLSALEGQTSDGEEXXXXXXXXXXXXXXXXXXXXXXEDISDKVARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGARAAAATNHAPAV 637
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA) HSP 1 Score: 238 bits (608), Expect = 2.690e-68 Identity = 119/151 (78.81%), Postives = 135/151 (89.40%), Query Frame = 3
Query: 861 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAV 1313
YSIKRCQGFVRCDMDIDAEVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAVEAAVT++++CPP LLD LGDR TIARIVKET AQVVVNKK+ R+IVRG +V +A V+A+I A
Sbjct: 42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAAA 192
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA) HSP 1 Score: 235 bits (600), Expect = 1.980e-64 Identity = 115/151 (76.16%), Postives = 134/151 (88.74%), Query Frame = 3
Query: 861 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAV 1313
YSIKRCQGF+RCDMDIDAEVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAVEAAVT+++ECPP LLD LGDR TIARIVKET AQVVVNKK+ R+I+RG+ +V +A ++ +I A
Sbjct: 57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAAA 207
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI) HSP 1 Score: 133 bits (335), Expect = 1.920e-28 Identity = 76/176 (43.18%), Postives = 107/176 (60.80%), Query Frame = 3
Query: 867 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVG 1379
++R GFVRC MDI EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+P + AA V ++ AP+ AG + + IECPP L+ L R +TI RI +E+ A VV+N+K+ ++IV G +SV L + +I +G GL + P + F G
Sbjct: 25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGLGGAVPPNFLDFPAG 200
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA) HSP 1 Score: 117 bits (293), Expect = 5.910e-23 Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 3
Query: 867 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKI 1232
+++ GFVRC +DI EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+P + AA V ++ AP+ AG + V++ I+CPP L+ L R +TI RI +E+ A VV+N+K+
Sbjct: 292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.090e-16 Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 3
Query: 915 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPI---------------------------------KAGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLA 1277
EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+P + AA V ++ P AG + V++ ++CPP L+ L R +TI RI +E+ A VV+N+K+ ++IV G +SV LA
Sbjct: 318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLA 473
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 9.720e-14 Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 3
Query: 963 MKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVG 1379
++H++GC MWVDQ+ LKL ITG D+P + AA V ++ AP+ AG + + IECPP L+ L R +TI RI +E+ A VV+N+K+ ++IV G +SV L + +I +G G + P + F G
Sbjct: 59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGPGGAVPPNFLDFPAG 202
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A382VC15_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VC15_9ZZZZ) HSP 1 Score: 61.6 bits (148), Expect = 4.650e-7 Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 3
Query: 2379 LQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 2522
L +GL KY FAENE+DL+A+GL+SE D ++G+P GPR K+L AV
Sbjct: 9 LDNLGLSKYADVFAENEIDLDAVGLLSEEDFKELGLPMGPRRKLLAAV 56
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A7S2PSC4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PSC4_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 6.060e-7 Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 2379 LQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGARAAAAV 2546
LQT+ L KY P ENEVDL L LM E DLA++GIPKGPRLKIL A + +A V
Sbjct: 1079 LQTLNLSKYAPILQENEVDLAVLPLMKEVDLAELGIPKGPRLKILRASSSGSAGQV 1134
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2666.1 vs. uniprot
Match: A0A813JZV9_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JZV9_POLGL) HSP 1 Score: 59.7 bits (143), Expect = 6.100e-7 Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 3
Query: 2376 VLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 2522
++Q +GL ++ P F EVDL+AL L E DL D+G+PKGPR+K+L AV
Sbjct: 4 LMQQIGLERFIPAFQAEEVDLDALSLFEEKDLQDLGLPKGPRVKLLRAV 52
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 2037 |
| Model size | 3188 |
| Exons | 2 |
| Ec32 ortholog | Ec-01_006780.1 |
| Ec32 ortholog description | K Homology domain |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko03036 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Metazoa |
| COG Functional cat. | T |
| EggNOG OGs | 38I05@33154,3BHRH@33208,COG0666@1,KOG0504@2759,KOG4369@1,KOG4369@2759 |
| EggNOG free text desc. | positive regulation of MDA-5 signaling pathway |
| GOs | GO:0000785,GO:0001568,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001817,GO:0001819,GO:0001944,GO:0001955,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0006275,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007005,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007346,GO:0007399,GO:0007423,GO:0007492,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010506,GO:0010507,GO:0010556,GO:0010564,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010927,GO:0010941,GO:0012505,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0021700,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030239,GO:0031032,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031430,GO:0031672,GO:0031674,GO:0031965,GO:0031967,GO:0031975,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032989,GO:0033043,GO:0039531,GO:0039533,GO:0039535,GO:0040011,GO:0042692,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043122,GO:0043123,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043900,GO:0043902,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0045214,GO:0045595,GO:0045596,GO:0045787,GO:0045931,GO:0046530,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051146,GO:0051147,GO:0051148,GO:0051150,GO:0051151,GO:0051171,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055001,GO:0055002,GO:0060255,GO:0060361,GO:0060548,GO:0061061,GO:0065007,GO:0070925,GO:0071695,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090596,GO:0097435,GO:0098542,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1900245,GO:1900246,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902531,GO:1902533,GO:1902806,GO:1902808,GO:1903146,GO:1903147,GO:2000045,GO:2000112 |
| KEGG ko | ko:K16726 |
| Preferred name | ANKRD17 |
| Seed eggNOG ortholog | 400682.PAC_15712215 |
| Seed ortholog evalue | 4.2e-07 |
| Seed ortholog score | 63.5 |
| Taxonomic scope | Metazoa |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927964.7182615-UTR-E-siliculosus-1a_F_contig1455:20975..21505 | 1622927964.7182615-UTR-E-siliculosus-1a_F_contig1455:20975..21505 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1455 20976..21505 + |
| 1696318755.993162-UTR-E-siliculosus-1a_F_contig1455:20975..21505 | 1696318755.993162-UTR-E-siliculosus-1a_F_contig1455:20975..21505 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1455 20976..21505 + |
| 1622927964.7640965-UTR-E-siliculosus-1a_F_contig1455:25471..26092 | 1622927964.7640965-UTR-E-siliculosus-1a_F_contig1455:25471..26092 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1455 25472..26092 + |
| 1696318756.0265212-UTR-E-siliculosus-1a_F_contig1455:25471..26092 | 1696318756.0265212-UTR-E-siliculosus-1a_F_contig1455:25471..26092 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1455 25472..26092 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927964.7339041-CDS-E-siliculosus-1a_F_contig1455:21505..21920 | 1622927964.7339041-CDS-E-siliculosus-1a_F_contig1455:21505..21920 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1455 21506..21920 + |
| 1696318756.006895-CDS-E-siliculosus-1a_F_contig1455:21505..21920 | 1696318756.006895-CDS-E-siliculosus-1a_F_contig1455:21505..21920 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1455 21506..21920 + |
| 1622927964.7486506-CDS-E-siliculosus-1a_F_contig1455:23849..25471 | 1622927964.7486506-CDS-E-siliculosus-1a_F_contig1455:23849..25471 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1455 23850..25471 + |
| 1696318756.0179555-CDS-E-siliculosus-1a_F_contig1455:23849..25471 | 1696318756.0179555-CDS-E-siliculosus-1a_F_contig1455:23849..25471 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1455 23850..25471 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1455.2666.1 >prot_E-siliculosus-1a_F_contig1455.2666.1 ID=prot_E-siliculosus-1a_F_contig1455.2666.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2666.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=679bp
MAPIFHQQQMDHHAHHAAWEDGRQARPGTHYPLQQHQHQHQHQQQQWPAQ GRLHINPAMVRDDGFAAAPPMQQHHGSMSASRHHQPQQQPLGSSSAGREV LGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTG CNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKT IECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAY ESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGGAGGGGGAGYFPDGAM SSSGRGGGGGDMRSPLVSGAVAGAAAGMHHLMLPSTAGGAGGSSHADPDF HHLAGPDYRHASDTAEFHHLATWQQEQQQLELKPEHSHQPLQRHHHHHHG RGVGSDTDDSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTAS TPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRA LVGGAGGASAASASSAGDLAVLKGSGLLSPASAADGNSGGGKPAGSLAPP PSPASMAGGEASRRMAGLPVPEAQVLSALEGQGSDGEEEEQEGSAAAAAG GGGEDISDKVARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADI GIPKGPRLKILNAVGARAAAAVNHAPAV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1455:20976..26092+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1455.2666.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2666.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2666.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5117bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:20976..26092+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) GCCGTCTGTCCGAGATAGACCGCCCCCCACCCCGTCGAGTCACTCGCTCC
CGTTCCAGACCAAACAACGACCAACGAGCCACCTACAAGTTACACTTGGC
ACCACGATATTCAGCCGGAGGAGGCGGTGACATATTTCGGCCCGCCCCAC
ACGACCGCGCCACACGGCAAGGCACCACACCCCGTTCCCCCTGCGACGCG
AGAGCCACGTCATCCGGCGGCAGCAGCACCCGGAGAGAGCAAACGAGCAC
ACAAGTTTTTTCTCTCTCTCTGCTCTCTGGGTCCTTCCGCACTTCTCAGA
CTTCGGACGTACACGCGAATTCGCATTCCAGGTCGTCCGGAGGAGCGCCG
GACAAACCGCAAGAGAGGGCGTTCGTTGGCAGCGCCACGTTGGGAGATAC
GCTGGCGGACTTCTGGGCCCTCGACGTGCACCAGCAGGCACAGCCCCAGC
CCCAGCAGCAAGAGAGGCAGCTGCAGCAGCAGCAGCAGCGGCAGCGGCAG
CGGCAGCAGACGGAGAGCATAGGAGAGCGGATGGCACCCATATTTCACCA
GCAGCAGATGGATCACCACGCCCACCACGCGGCCTGGGAAGACGGCAGAC
AAGCCCGCCCGGGCACCCACTACCCCCTCCAGCAGCACCAGCACCAGCAC
CAGCATCAGCAGCAGCAATGGCCTGCTCAAGGCCGGCTGCACATCAACCC
GGCGATGGTCCGCGACGACGGATTCGCCGCTGCCCCGCCGATGCAGCAGC
ACCACGGCAGCATGTCCGCCTCGCGCCACCACCAGCCCCAGCAGCAGCCG
CTCGGCTCGTCCTCGGCCGGGCGTGAGGTTCTCGGGGAGGGATCCTTCAT
GGGGCGAGGCTACAGCATCAAGCGGTGTCAAGGGTTCGTGAGGTGCGACA
TGGACATCGACGCTGAGGTGGTCGGATGGGTCATCGGAAAAAATGGTGAG
TCAAGAGTCAAGTTGTTGAGGATCGTGGGGGTGTTGTTGGTGACATACTC
TGCTACCTATATTTGTAGTTGCCGGAAGAGTCATCCATGACGGGCAGGAA
AGAAAAAGTATAACTGCGTGACACGCGGGACATTTCGCGATGAAACACCC
GAGGCAAGGTCTGAGAGAGCATCTAGCGCAGCGATCCACCGGCGAACTGC
CCTGTGCCCTTGGCATCGTAACCCCCCTTTGATGACGCCTTGATTTCGCC
AGAGACCGCCCGGTTCCCGCCGGGGCTTTTTTTCAGACCAAAAAAAGAAA
TGTAATTTTCTCGTTCGTTCTAGAAAAATGGAAACTGCTGCTGCTGTCGT
CTAAATGTTGTGGTGGTGGCACAAACGACGTTCCGATATTGATGGATCGA
CCTCCTTTCCCAGCGCTGCTGCTACCTCCACTGCACGGCACGAAAATGAA
AAAGAGGGTTTGACCTCTCGCGCCTCTCCTTCCCGAGAACCGTGCAACAG
TTTTCTTGAGACTTCAACGTTGGATTGACAACACACAGTATACACCCTTC
CTATCGTGCAACTTGATTGTGGTGTGCAGATGCAACGCGCATCCCACAAA
AAGGGCAAAGAAATGTGTTGTACTTGCCACGATCGATCGCGATCGGAGAG
ATGATCCGCTTTTTCGACATTATCCTCGTGCAACTCCTACTGTTTATTTC
TAGTGAATCCCTCATGTGGCCGCCGGTGCCGCGTTGAAGAGAAAGGCCCC
GGTTGAAGTGCGCTAGATATTTTTCCGTGCTGACTGCTGTGTTCAAGAGA
ACCGACCTCCAGCTGACGAAGTGTACAGGCTTGCTTATGTTGTGCCGCAC
CATCTGCTACTACGATAAAATATGGTTTGGTACATACGTAGACCGAAACT
GCACACCACAACCAACACACGGAGACTGTTGGGTGAGAGATTTGACACGT
TGGTTGCTTGTTGCTTCTGAAATAGTGGAAGGTTGATGGAAGTAGGTGTG
TATAGAGGTACATGCCTACTAACCTGTCGGTGATGATTATATCTGTCTGT
AGTGCGATCAAATCCTCAACGCTCATACCGCCCGTCGTGTGGTGCATCTC
TCAGGAGAGCCGTTGGTGGCGTCGTTTTACCTGCTCGTTTTTTTCCTCTC
AGTTTGTATTCGTTTATCCAACGGTGAGCAGCGGAAAGAACGGGGCTGCT
GTTGGCTATGACACACTCTGACGCTCCCATTTATTTTTTCGAGCAGTGTT
GCGGGTGGTGGAAATAACGAAATTAATAACGTCCCAATCATATACGTATG
GCAATCACGTACTATAACAGCAGCAGGTGGTTCTTTTTATTTTTGGGTGT
TGGAAAATAATGCTCAGACGTCCTTATATTCACGTACTTCAGGGTGGTTC
GGAGTATTATTTTTCTGTTTGCAGAGCGTAGAGTCCCAACGAGGCCCTTG
TGTACGTGTGATTGCTTTGTGCGTTAATCAAGGCCTTGTGACAAGCGGCA
AGAAACACGAAGTACATGTCTTGATGGTATTCTAGATCGTGAAACCTGGT
CGTTTGCTTGCTTGGTTTGATTGGTTGACTAAATAGTGAAGTGTACTCAA
AACCCACGTTCGCAGTGTCATTTGGCATTACGTCATTTGCCCCCGTTCTT
TCCATCGTGTCGTGCGCACATGTAGAACAATGGATACGTTTTTCTGCAGA
AAAAGCCACGCACGCACGCGCGTCGCTAAAACACAAGTCGGTTTTTTCAC
ATCTCGTCGTCAACCCGACGCACATGTGTAGAGTATTCCTCGTCATATCT
ACATACTGCGGACGGACGAAGCTCGCACGGCAGCTCTCGGAAGGAACACG
TAATGATCGCGCCCACTGACACGTATCCCTCCGCTTGTTCTCCCGCCCCT
CCTCTTGTCTGCGCGGACTTTCAGGTAGCACAATCAAGGACATGAAGCAC
AAGACCGGGTGCAACATGTGGGTAGACCAGCGCGCGCTCAAGCTCACCAT
CACCGGCCCGGACCTGCCCTCGGTCGAGCACGCCGCCAAGTCGGTCGACG
CCTACGTTGCGGCCGCGCCGATCAAGGCCGGCGCCGTGGAGGCGGCGGTG
ACCAAGACCATCGAGTGCCCGCCCCAGCTGCTCGACGACCTCGGGGACCG
CACCACGATCGCTCGCATCGTCAAGGAGACCCACGCCCAGGTGGTGGTGA
ACAAGAAGATCGGCCGCATCATCGTGCGCGGGGACCACCGCTCCGTCGAC
CTCGCCTACGAGAGCGTCCGGGCCATGATCCACAACGCCGTCCACGGAAG
CTACGGCCTCGGCCTCCGGGTCAGCACCCCCGACAGCCATGGCTCGTTCG
GCGTTGGCGGCGGGGCCGGCGGCGGCGGCGGGGCCGGGTACTTCCCGGAT
GGCGCCATGAGCAGCAGCGGCCGCGGCGGCGGCGGCGGTGACATGCGGTC
TCCTCTCGTCAGCGGCGCGGTGGCCGGGGCGGCGGCGGGGATGCACCACC
TGATGCTTCCCTCCACGGCCGGCGGCGCCGGCGGCAGCTCCCACGCCGAT
CCGGACTTCCACCACCTCGCCGGCCCCGACTACCGCCACGCGAGCGACAC
TGCCGAGTTCCACCACCTGGCCACGTGGCAGCAGGAGCAGCAGCAGCTGG
AGCTCAAGCCGGAGCACTCGCACCAGCCGCTGCAGCGCCACCACCACCAC
CACCACGGGCGCGGGGTGGGCTCCGACACGGACGACTCCGAGATCGAGAC
GGTGTCCCTCGGGTCCATCGGCGCGCGCACCCCCGTGAGCTCCACCGCAG
GCTCCCCGCGCGTGGTGGGGTCGTACAACACCAGCCCCGCCCTGTCCGGC
ACGGCGTCCACGCCCGTCGGCGACTGGTCCCTCTTCTCCGGCGGCTTCGG
CATCGGCATGGCCGCCCTCCAGGAGGGGGAGTCGTCCACCTCGCGCTCCA
GCACCCCGACCACCGCCCGCACCACCCCGCGCGTCCACTTCCCCGAGGGC
CTCCGCGCCCTCGTGGGCGGCGCCGGGGGCGCCTCGGCCGCCTCCGCCTC
CTCCGCGGGCGACCTTGCGGTCCTCAAGGGCTCGGGTCTGTTGTCTCCCG
CTAGCGCCGCCGACGGCAACAGCGGCGGCGGCAAGCCAGCGGGATCACTC
GCGCCCCCGCCGTCGCCGGCGTCGATGGCCGGCGGCGAGGCCTCCCGCAG
GATGGCCGGGCTGCCGGTGCCGGAGGCCCAGGTGCTGAGCGCGCTGGAGG
GGCAGGGGTCCGACGGCGAGGAGGAGGAACAGGAGGGATCGGCGGCGGCG
GCGGCGGGCGGCGGCGGGGAGGACATCTCGGACAAAGTCGCGCGCCTGGG
AAAGGTTCTCCAGACGATGGGGCTCGGAAAGTACTGTCCCAAGTTCGCGG
AAAACGAGGTGGACCTCGAGGCCCTGGGCCTGATGAGCGAGAGCGACCTG
GCTGACATCGGGATCCCTAAGGGCCCGAGGCTGAAGATCCTGAACGCCGT
GGGCGCCCGCGCGGCGGCGGCGGTGAACCACGCCCCGGCCGTTTGAAGTC
GTCATCATCCTGAGACGGCTGAAGCCGAAAGGAGGACAATGTTGCAACAT
GGAAATGAAAACGAGGAGGAGGAGGAGGAATGGGTAAGAGAAAGAGAAAG
TGCTTGTGCTACCCCCCATAAAAGAGAAGAGTGGTAAAGATATAAAAACA
CGCGCGGGGTGGCTGTTTTTCGGAGTCGTCGTCGTCGTGGTGGTGGTGGT
GGTCTTATTTTGTTTTTAACGGGAAATTATAGAAGTGATCCATGTTTGTC
CCCCCCCCCCCCCCCTTTCTTTCCCCCCGTCCCCTGGGGGCGGGCGCGAG
TGCGATAGTATTGTACGGTTCGTAGGAGCTATTCGCAACGCCTGCCTCCC
CACATGGGAAGCATGACGGCGATCATAGCGGTAGCGAGAATACACTGGAG
AATTGATCAGAGGAGTGTTGGGTTTTTTATGGTTTTGGAGAAAGGAGAAG
AATACGCGCGGGAACCCTTTGACGTTCCCGATCGGCGAAGAGCCCGAGCG
CCTGTAGTAGTGTTTGAATGCCATCCCACAGAATGTTTACGTTGTTTTTT
GAGAATGGAGGGAGGGTCGGTTTGTTTTCGGTCGTGCGTGTTGGATGGAG
GGCTTAGTATATTTTTT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1455:20976..26092+ >mRNA_E-siliculosus-1a_F_contig1455.2666.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2666.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2666.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4074bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:20976..26092+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGGCACCCATATTTCACCAGCAGCAGATGGATCACCACGCCCACCACGC GGCCTGGGAAGACGGCAGACAAGCCCGCCCGGGCACCCACTACCCCCTCC AGCAGCACCAGCACCAGCACCAGCATCAGCAGCAGCAATGGCCTGCTCAA GGCCGGCTGCACATCAACCCGGCGATGGTCCGCGACGACGGATTCGCCGC TGCCCCGCCGATGCAGCAGCACCACGGCAGCATGTCCGCCTCGCGCCACC ACCAGCCCCAGCAGCAGCCGCTCGGCTCGTCCTCGGCCGGGCGTGAGGTT CTCGGGGAGGGATCCTTCATGGGGCGAGGCTACAGCATCAAGCGGTGTCA AGGGTTCGTGAGGTGCGACATGGACATCGACGCTGAGGTGGTCGGATGGG TCATCGGAAAAAATGATGGCACCCATATTTCACCAGCAGCAGATGGATCA CCACGCCCACCACGCGGCCTGGGAAGACGGCAGACAAGCCCGCCCGGGCA CCCACTACCCCCTCCAGCAGCACCAGCACCAGCACCAGCATCAGCAGCAG CAATGGCCTGCTCAAGGCCGGCTGCACATCAACCCGGCGATGGTCCGCGA CGACGGATTCGCCGCTGCCCCGCCGATGCAGCAGCACCACGGCAGCATGT CCGCCTCGCGCCACCACCAGCCCCAGCAGCAGCCGCTCGGCTCGTCCTCG GCCGGGCGTGAGGTTCTCGGGGAGGGATCCTTCATGGGGCGAGGCTACAG CATCAAGCGGTGTCAAGGGTTCGTGAGGTGCGACATGGACATCGACGCTG AGGTGGTCGGATGGGTCATCGGAAAAAATGGTAGCACAATCAAGGACATG AAGCACAAGACCGGGTGCAACATGTGGGTAGACCAGCGCGCGCTCAAGCT CACCATCACCGGCCCGGACCTGCCCTCGGTCGAGCACGCCGCCAAGTCGG TCGACGCCTACGTTGCGGCCGCGCCGATCAAGGCCGGCGCCGTGGAGGCG GCGGTGACCAAGACCATCGAGTGCCCGCCCCAGCTGCTCGACGACCTCGG GGACCGCACCACGATCGCTCGCATCGTCAAGGAGACCCACGCCCAGGTGG TGGTGAACAAGAAGATCGGCCGCATCATCGTGCGCGGGGACCACCGCTCC GTCGACCTCGCCTACGAGAGCGTCCGGGCCATGATCCACAACGCCGTCCA CGGAAGCTACGGCCTCGGCCTCCGGGTCAGCACCCCCGACAGCCATGGCT CGTTCGGCGTTGGCGGCGGGGCCGGCGGCGGCGGCGGGGCCGGGTACTTC CCGGATGGCGCCATGAGCAGCAGCGGCCGCGGCGGCGGCGGCGGTGACAT GCGGTCTCCTCTCGTCAGCGGCGCGGTGGCCGGGGCGGCGGCGGGGATGC ACCACCTGATGCTTCCCTCCACGGCCGGCGGCGCCGGCGGCAGCTCCCAC GCCGATCCGGACTTCCACCACCTCGCCGGCCCCGACTACCGCCACGCGAG CGACACTGCCGAGTTCCACCACCTGGCCACGTGGCAGCAGGAGCAGCAGC AGCTGGAGCTCAAGCCGGAGCACTCGCACCAGCCGCTGCAGCGCCACCAC CACCACCACCACGGGCGCGGGGTGGGCTCCGACACGGACGACTCCGAGAT CGAGACGGTGTCCCTCGGGTCCATCGGCGCGCGCACCCCCGTGAGCTCCA CCGCAGGCTCCCCGCGCGTGGTGGGGTCGTACAACACCAGCCCCGCCCTG TCCGGCACGGCGTCCACGCCCGTCGGCGACTGGTCCCTCTTCTCCGGCGG CTTCGGCATCGGCATGGCCGCCCTCCAGGAGGGGGAGTCGTCCACCTCGC GCTCCAGCACCCCGACCACCGCCCGCACCACCCCGCGCGTCCACTTCCCC GAGGGCCTCCGCGCCCTCGTGGGCGGCGCCGGGGGCGCCTCGGCCGCCTC CGCCTCCTCCGCGGGCGACCTTGCGGTCCTCAAGGGCTCGGGTCTGTTGT CTCCCGCTAGCGCCGCCGACGGCAACAGCGGCGGCGGCAAGCCAGCGGGA TCACTCGCGCCCCCGCCGTCGCCGGCGTCGATGGCCGGCGGCGAGGCCTC CCGCAGGATGGCCGGGCTGCCGGTGCCGGAGGCCCAGGTGCTGAGCGCGC TGGAGGGGCAGGGGTCCGACGGCGAGGAGGAGGAACAGGAGGGATCGGCG GCGGCGGCGGCGGGCGGCGGCGGGGAGGACATCTCGGACAAAGTCGCGCG CCTGGGAAAGGTTCTCCAGACGATGGGGCTCGGAAAGTACTGTCCCAAGT TCGCGGAAAACGAGGTGGACCTCGAGGCCCTGGGCCTGATGAGCGAGAGC GACCTGGCTGACATCGGGATCCCTAAGGGCCCGAGGCTGAAGATCCTGAA CGCCGTGGGCGCCCGCGCGGCGGCGGCGGTGAACCACGCCCCGGCCGTTT GAGTAGCACAATCAAGGACATGAAGCACAAGACCGGGTGCAACATGTGGG TAGACCAGCGCGCGCTCAAGCTCACCATCACCGGCCCGGACCTGCCCTCG GTCGAGCACGCCGCCAAGTCGGTCGACGCCTACGTTGCGGCCGCGCCGAT CAAGGCCGGCGCCGTGGAGGCGGCGGTGACCAAGACCATCGAGTGCCCGC CCCAGCTGCTCGACGACCTCGGGGACCGCACCACGATCGCTCGCATCGTC AAGGAGACCCACGCCCAGGTGGTGGTGAACAAGAAGATCGGCCGCATCAT CGTGCGCGGGGACCACCGCTCCGTCGACCTCGCCTACGAGAGCGTCCGGG CCATGATCCACAACGCCGTCCACGGAAGCTACGGCCTCGGCCTCCGGGTC AGCACCCCCGACAGCCATGGCTCGTTCGGCGTTGGCGGCGGGGCCGGCGG CGGCGGCGGGGCCGGGTACTTCCCGGATGGCGCCATGAGCAGCAGCGGCC GCGGCGGCGGCGGCGGTGACATGCGGTCTCCTCTCGTCAGCGGCGCGGTG GCCGGGGCGGCGGCGGGGATGCACCACCTGATGCTTCCCTCCACGGCCGG CGGCGCCGGCGGCAGCTCCCACGCCGATCCGGACTTCCACCACCTCGCCG GCCCCGACTACCGCCACGCGAGCGACACTGCCGAGTTCCACCACCTGGCC ACGTGGCAGCAGGAGCAGCAGCAGCTGGAGCTCAAGCCGGAGCACTCGCA CCAGCCGCTGCAGCGCCACCACCACCACCACCACGGGCGCGGGGTGGGCT CCGACACGGACGACTCCGAGATCGAGACGGTGTCCCTCGGGTCCATCGGC GCGCGCACCCCCGTGAGCTCCACCGCAGGCTCCCCGCGCGTGGTGGGGTC GTACAACACCAGCCCCGCCCTGTCCGGCACGGCGTCCACGCCCGTCGGCG ACTGGTCCCTCTTCTCCGGCGGCTTCGGCATCGGCATGGCCGCCCTCCAG GAGGGGGAGTCGTCCACCTCGCGCTCCAGCACCCCGACCACCGCCCGCAC CACCCCGCGCGTCCACTTCCCCGAGGGCCTCCGCGCCCTCGTGGGCGGCG CCGGGGGCGCCTCGGCCGCCTCCGCCTCCTCCGCGGGCGACCTTGCGGTC CTCAAGGGCTCGGGTCTGTTGTCTCCCGCTAGCGCCGCCGACGGCAACAG CGGCGGCGGCAAGCCAGCGGGATCACTCGCGCCCCCGCCGTCGCCGGCGT CGATGGCCGGCGGCGAGGCCTCCCGCAGGATGGCCGGGCTGCCGGTGCCG GAGGCCCAGGTGCTGAGCGCGCTGGAGGGGCAGGGGTCCGACGGCGAGGA GGAGGAACAGGAGGGATCGGCGGCGGCGGCGGCGGGCGGCGGCGGGGAGG ACATCTCGGACAAAGTCGCGCGCCTGGGAAAGGTTCTCCAGACGATGGGG CTCGGAAAGTACTGTCCCAAGTTCGCGGAAAACGAGGTGGACCTCGAGGC CCTGGGCCTGATGAGCGAGAGCGACCTGGCTGACATCGGGATCCCTAAGG GCCCGAGGCTGAAGATCCTGAACGCCGTGGGCGCCCGCGCGGCGGCGGCG GTGAACCACGCCCCGGCCGTTTGA back to top
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