mRNA_E-siliculosus-1a_F_contig1455.2663.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1455.2663.1
Unique NamemRNA_E-siliculosus-1a_F_contig1455.2663.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1455.2663.1 vs. uniprot
Match: D7FQA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA8_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.290e-76
Identity = 145/158 (91.77%), Postives = 145/158 (91.77%), Query Frame = 1 
Query:    1 QPKCKVDQVRDLLTSKLSERVELCRELLVLLRRAQKKALEDDSPEKALADPTTRPSERQGKHDQLLADRQKALDSIAQRITEAEAKAEEARTKFEAAXXXXXXXXXXXXXXXXXXXVPAGGAGEGWASYLDEESGKYYWFNEHTGEAYYDEGDGAAAG 474
            QPK KVDQVR LLTSKLSERVELC ELLVLLRRAQKKALEDDSPEKALADPTTRPSERQGKHDQLLADRQKALDSIAQRI EAEAKAEEAR KFEAAXXXXXXXXXXXX        PAGGAGEGWASYLDEESGKYYWFNEHTGEAYYDEGDGAAAG
Sbjct:  152 QPKSKVDQVRGLLTSKLSERVELCEELLVLLRRAQKKALEDDSPEKALADPTTRPSERQGKHDQLLADRQKALDSIAQRIAEAEAKAEEARIKFEAAXXXXXXXXXXXXREDGGAVAPAGGAGEGWASYLDEESGKYYWFNEHTGEAYYDEGDGAAAG 309
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1455.2663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQA8_ECTSI1.290e-7691.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1455contigE-siliculosus-1a_F_contig1455:4867..6671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size477
Model size810
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1455.2663.1prot_E-siliculosus-1a_F_contig1455.2663.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1455 4867..6340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927964.148971-CDS-E-siliculosus-1a_F_contig1455:4866..49771622927964.148971-CDS-E-siliculosus-1a_F_contig1455:4866..4977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 4867..4977 +
1696318755.7368162-CDS-E-siliculosus-1a_F_contig1455:4866..49771696318755.7368162-CDS-E-siliculosus-1a_F_contig1455:4866..4977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 4867..4977 +
1622927964.1695247-CDS-E-siliculosus-1a_F_contig1455:5974..63401622927964.1695247-CDS-E-siliculosus-1a_F_contig1455:5974..6340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 5975..6340 +
1696318755.7452326-CDS-E-siliculosus-1a_F_contig1455:5974..63401696318755.7452326-CDS-E-siliculosus-1a_F_contig1455:5974..6340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1455 5975..6340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927964.1865695-UTR-E-siliculosus-1a_F_contig1455:6340..66711622927964.1865695-UTR-E-siliculosus-1a_F_contig1455:6340..6671Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1455 6341..6671 +
1696318755.7540233-UTR-E-siliculosus-1a_F_contig1455:6340..66711696318755.7540233-UTR-E-siliculosus-1a_F_contig1455:6340..6671Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1455 6341..6671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1455.2663.1

>prot_E-siliculosus-1a_F_contig1455.2663.1 ID=prot_E-siliculosus-1a_F_contig1455.2663.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=159bp
QPKCKVDQVRDLLTSKLSERVELCRELLVLLRRAQKKALEDDSPEKALAD
PTTRPSERQGKHDQLLADRQKALDSIAQRITEAEAKAEEARTKFEAAAAA
AAAARDGGGGEDGGAAVPAGGAGEGWASYLDEESGKYYWFNEHTGEAYYD
EGDGAAAG*
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mRNA from alignment at E-siliculosus-1a_F_contig1455:4867..6671+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1455.2663.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2663.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1805bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:4867..6671+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCCCAAGTGCAAGGTGGACCAGGTCAGGGACCTCTTGACGAGCAAGCT
GTCGGAGAGGGTCGAGCTCTGCAGGGAGCTGTTGGTGCTGCTGAGAAGAG
CACAGAAGAAGGTGCGAGAAATGACGGGAGAAAGTGGAAAAATGAATTGG
TACTGGAACTTTGTGCGTCGCATCGACATGTAGGCCTGTCGCAATCAGGA
TTGACTTTGGGAGGAAACAGAGGGTCACCCGTAAGCGTTTCCGACAAACG
GGATCCTTCTTGCTTTTCCCCCGCCGGGGGATTCGTTTTCTTGTGAAACT
AGACCCTCACGGGGGGAGGTGCAAGGAAACAAGTCTGAAAAATCATTTTG
TATTCGCTGACCAACACCTAACCACGGGGATTGCTGTAGGTACCTTAGCC
ATCGGTCGGTTTTCTTTTTATTAGTTGCTGATCGATTGCAACAAAAATTG
TGTGCTTCTCGACTTGGACCTTTTGGTGGCCATGAAGCCTATCTATACAG
ACCTTTGCTTGTGAGTTGGTTGTCGAGTGAGGAGAGAACCACGGAATGCG
CACGTGCGTACAGCGACAATACTGTAGGAATCGCGCGCATATCATCTGCT
TCTGCGACGGGACCCAGTGGTGGTGATGATGTTTACCGTACATCTCCAAA
ACCTGAAGATACTTCTTTGAAATGGGGCAATACAGACGGGCCGAACGAAA
TCACGTGGGCCCTGTCATTGTGTCACACTGTATGCATACGTCTCGCCTCG
CGAGAGAGGGAGCGCGCGGCAGCACTATCGTTGGTGTGCAGATTTGTTAT
CGTACGGGTGTTTTTCGCGTTGCATGTGCCTAGCGAAGAGGCAGGCCGAA
CGAAGAGGGAGGCTAAACGGGCACGCTGCGTATTTGCCGTCTTCAACTGA
ACACTTCATCGCGAGAATTTGCATTCATTCCAGCCCTCCCCCTTCCCCCG
CCTTCCCCCCAATCCCTCGCCCCCCCTCCCGTAGCCGCCAGCTCCGTCAT
TCCCTACCAAACCAAAGTTTCATCTTAACTTTTGATCCGCGGGACAAACA
CCACCACAACACAACGGCACCCTCCCCCGTTTCCGACACTGCAATGGATA
AATCACAGGCGCTGGAAGACGATTCTCCCGAGAAGGCATTGGCCGACCCG
ACCACCCGACCGTCCGAGCGGCAGGGCAAGCACGACCAGCTGCTAGCAGA
CCGCCAAAAAGCTCTGGACAGCATCGCGCAGAGGATCACCGAGGCCGAAG
CGAAGGCCGAGGAGGCTAGGACAAAGTTCGAGGCGGCCGCCGCCGCCGCC
GCCGCCGCCCGTGACGGCGGTGGGGGGGAAGACGGTGGGGCGGCTGTGCC
GGCAGGCGGTGCCGGAGAAGGATGGGCGTCGTATCTAGACGAGGAGTCGG
GGAAGTACTACTGGTTCAACGAGCACACCGGGGAGGCCTACTACGATGAG
GGCGATGGCGCCGCCGCCGGCTGATAGTTTGTCATGCCTGTGCAGGGTAG
TACTTGTTGTGCTTGTACTTCGTTTGTTAATGTGTAGTCTGTGAAAAGAC
CCCTTTCCAGGTACTGCACCTCTTCTTACGGTAGGCGTTCATCCGTCAAG
TTGCGTTATTATTGTCTCCGTGTGTAACAGGTGTGTGTGGAGAATGCATC
ACGAATCACCATTTTGAAACACGTCATGCGGGTGTACGGTGTCTGATTCC
TGTGTTTGTTTGCAGTTGTAGTTGCCCCGTCGTGTGTGCCTTCGTTGACA
AGGCATCCCATCCGTCCCCCATGCATGGCAAGAAATTGGTAGCCGTACAA
TAGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1455:4867..6671+

>mRNA_E-siliculosus-1a_F_contig1455.2663.1 ID=mRNA_E-siliculosus-1a_F_contig1455.2663.1|Name=mRNA_E-siliculosus-1a_F_contig1455.2663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1455:4867..6671+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCCCAAGTGCAAGGTGGACCAGGTCAGGGACCTCTTGACGAGCAAGCT
GTCGGAGAGGGTCGAGCTCTGCAGGGAGCTGTTGGTGCTGCTGAGAAGAG
CACAGAAGAAGCAGCCCAAGTGCAAGGTGGACCAGGTCAGGGACCTCTTG
ACGAGCAAGCTGTCGGAGAGGGTCGAGCTCTGCAGGGAGCTGTTGGTGCT
GCTGAGAAGAGCACAGAAGAAGGCGCTGGAAGACGATTCTCCCGAGAAGG
CATTGGCCGACCCGACCACCCGACCGTCCGAGCGGCAGGGCAAGCACGAC
CAGCTGCTAGCAGACCGCCAAAAAGCTCTGGACAGCATCGCGCAGAGGAT
CACCGAGGCCGAAGCGAAGGCCGAGGAGGCTAGGACAAAGTTCGAGGCGG
CCGCCGCCGCCGCCGCCGCCGCCCGTGACGGCGGTGGGGGGGAAGACGGT
GGGGCGGCTGTGCCGGCAGGCGGTGCCGGAGAAGGATGGGCGTCGTATCT
AGACGAGGAGTCGGGGAAGTACTACTGGTTCAACGAGCACACCGGGGAGG
CCTACTACGATGAGGGCGATGGCGCCGCCGCCGGCTGAGCGCTGGAAGAC
GATTCTCCCGAGAAGGCATTGGCCGACCCGACCACCCGACCGTCCGAGCG
GCAGGGCAAGCACGACCAGCTGCTAGCAGACCGCCAAAAAGCTCTGGACA
GCATCGCGCAGAGGATCACCGAGGCCGAAGCGAAGGCCGAGGAGGCTAGG
ACAAAGTTCGAGGCGGCCGCCGCCGCCGCCGCCGCCGCCCGTGACGGCGG
TGGGGGGGAAGACGGTGGGGCGGCTGTGCCGGCAGGCGGTGCCGGAGAAG
GATGGGCGTCGTATCTAGACGAGGAGTCGGGGAAGTACTACTGGTTCAAC
GAGCACACCGGGGAGGCCTACTACGATGAGGGCGATGGCGCCGCCGCCGG
CTGA
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